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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0528000-00
CDS Infomation

cds chromosome:IRGSP-1.0:2:19347064:19351299:-1 gene:Os02g0528000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING-type domain containing protein. (Os02t0528000-00)
Sequence

ATGTCCTCGCCGGCGGAGAAGTCGACGAGCGGCGGCGGCGGCATGAGCATGAACACGGTG
ACGACGGTGATGGCCTTCTCCGTCAGCGCCTTCTTCGTGCTCTTCATCTTCGTCAGGCTG
CTCTGCGCCCGCATCCACCTCAGGGCGGGCCAATCCGCCGCCGCAGCCGCGGCGGCGCAC
GGCGACGCCTTCCCGGCCTTCAGCGTACGTACGCAGCAACCCCATCCTCTCGTTGATCGT
TCGTGCTACGTACGTACGAGCGTGTTTGTGATCGGTTCGCATGGCGCGCGCGCGCGCAGG
TGGAGCGCGGGATCCGCGGGCTGGAGCCGGCGGTGGTGCCCGGTGTGCCTGGAGGAGTAC
GAGGCGAAGGACGTGGTGCGCGTGCTCCCCTCCTGCGGCCACGCCTTCCACGTCGCCTGC
ATCGACGCCTGGCTCAGGCAGCACTCCACCTGCCCCGTCTGCCGCGCCTCCCTCCGCGCC
GCCGCCGCCAACGCCAAGCACCCACCCCCCTCCCCCGCCGCCATGCTGCCGCCGCCCCTC
TACTGCCCCCCCGCCGCCGCCAGGCCCTCCACCCCGGCCCCCGCGCGTGCAACCTTCCGG
CAGCAGCAGCAGCAGCTCTCCGCCACCGCGTCCTCGTCGTCGGACGCCGACGCGCTCCAA
CCGGCGGCAGCCGCAGACGACCGGCTGGAGATCGTCGTCTCCGATGAGCAGCCCGCGCCG
TCCGCCGCCGCCGGCGGACAGGCAGAAGAACATCCTCATCCTCCTCCTCCTGCCGCTGCC
GCGGGCCATCGATGA

Peptide Sequence

PEP ID

Os02t0528000-00
PEP Infomation

pep chromosome:IRGSP-1.0:2:19347064:19351299:-1 gene:Os02g0528000 transcript:Os02t0528000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING-type domain containing protein. (Os02t0528000-00)
Sequence

MSSPAEKSTSGGGGMSMNTVTTVMAFSVSAFFVLFIFVRLLCARIHLRAGQSAAAAAAAH
GDAFPAFSVRTQQPHPLVDRSCYVRTSVFVIGSHGARARRWSAGSAGWSRRWCPVCLEEY
EAKDVVRVLPSCGHAFHVACIDAWLRQHSTCPVCRASLRAAAANAKHPPPSPAAMLPPPL
YCPPAAARPSTPAPARATFRQQQQQLSATASSSSDADALQPAAAADDRLEIVVSDEQPAP
SAAAGGQAEEHPHPPPPAAAAGHR

Transcript Sequence

Transcript ID

Os02t0528000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:19347064:19351299:-1 gene:Os02g0528000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING-type domain containing protein. (Os02t0528000-00)
Sequence

GCTAGCTGAGCTCGCGGATTGGGTGGTGGTGGTGGTGGAGCCCGGAGTGAGATGCTGGAG
GGCGAATGTCCTCGCCGGCGGAGAAGTCGACGAGCGGCGGCGGCGGCATGAGCATGAACA
CGGTGACGACGGTGATGGCCTTCTCCGTCAGCGCCTTCTTCGTGCTCTTCATCTTCGTCA
GGCTGCTCTGCGCCCGCATCCACCTCAGGGCGGGCCAATCCGCCGCCGCAGCCGCGGCGG
CGCACGGCGACGCCTTCCCGGCCTTCAGCGTACGTACGCAGCAACCCCATCCTCTCGTTG
ATCGTTCGTGCTACGTACGTACGAGCGTGTTTGTGATCGGTTCGCATGGCGCGCGCGCGC
GCAGGTGGAGCGCGGGATCCGCGGGCTGGAGCCGGCGGTGGTGCCCGGTGTGCCTGGAGG
AGTACGAGGCGAAGGACGTGGTGCGCGTGCTCCCCTCCTGCGGCCACGCCTTCCACGTCG
CCTGCATCGACGCCTGGCTCAGGCAGCACTCCACCTGCCCCGTCTGCCGCGCCTCCCTCC
GCGCCGCCGCCGCCAACGCCAAGCACCCACCCCCCTCCCCCGCCGCCATGCTGCCGCCGC
CCCTCTACTGCCCCCCCGCCGCCGCCAGGCCCTCCACCCCGGCCCCCGCGCGTGCAACCT
TCCGGCAGCAGCAGCAGCAGCTCTCCGCCACCGCGTCCTCGTCGTCGGACGCCGACGCGC
TCCAACCGGCGGCAGCCGCAGACGACCGGCTGGAGATCGTCGTCTCCGATGAGCAGCCCG
CGCCGTCCGCCGCCGCCGGCGGACAGGCAGAAGAACATCCTCATCCTCCTCCTCCTGCCG
CTGCCGCGGGCCATCGATGA