Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0524600-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:19178240:19179938:-1 gene:Os02g0524600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRANSPARENT TESTA GLABRA1B, TRANSPARENT TESTA GLABRA 1B description:WD40 repeat protein. (Os02t0524600-01)
Sequence

ATGGGAGGAGGCGGCGCGGGTGGGGACGGCGAGGCGTGGGCGGATCAGGAGCAGGGGAAC
GGCGGGGGCCGCGGCGGCGGCGGCGGGGAGGCGAAGCGGTCGGAGATCTACACGTACGAG
GCCGGGTGGCACATCTACGGCATGAACTGGAGCGTGCGGCGCGACAAGAAGTACCGGCTC
GCCATCGCCAGCCTGCTCGAGCAGCACAACAACCACGTCCAGGTGGTCCAGCTCGACGAG
TCCTCCGGCGACATCGCCCCCGTCCTCACCTTCGACCACCCCTACCCTCCCACCAAGACC
ATGTTCGTCCCGGACCCGCACTCCGTCCGCCCCGACCTCCTCGCCACCTCCGCCGACCAC
CTCCGCATCTGGCGCATCCCCTCCCCGGACGAGGCCGCCGCCGCCGCCGCCGCCAGCTCC
AACTCCGGCTCCGTCCGCTGCAACGGCACCGCCTCGCCCGACGTCGAGCTGCGCTGCGAG
CTCAACGGCAACCGCAACAGCGACTACTGCGGCCCGCTCACCTCCTTCGACTGGAACGAC
GCCGACCCCCGCCGCATCGGGACCTCCTCCATCGACACCACCTGCACCATCTGGGACGTC
GAGCGGGAGGCCGTCGACACCCAGCTCATTGCCCATGACAAGGAGGTCTACGACATCGCC
TGGGGCGGTGCCGGCGTCTTTGCATCCGTCTCCGCCGACGGCTCCGTTCGCGTGTTTGAT
CTCCGGGACAAGGAGCATTCCACAATTATCTACGAGTCCGGTTCTGGCGGCAGCTCCAAT
TCGGCAGGTGCAGATGGCGGCGCTGCCTCGCCAACACCGCTGGTTAGGTTAGGGTGGAAC
AAGCAGGACCCTAGGTACATGGCAACCATCATCATGGATAGCCCCAAGGTGGTCGTGCTT
GATATCCGCTACCCAACACTACCGGTGGTCGAGCTCCACCGCCACCATTCGCCCGTCAAC
GCCATAGCATGGGCGCCACACTCCTCTTGTCACATTTGCACAGCTGGGGATGACTCGCAG
GCCCTTATATGGGACCTGTCATCCATGGGCACTGGGAGCAACAATGGTGGCAATGGAAAT
GGCAATGCTGCAGCTGCTGCGGCAGCTGAGGGCGGTCTTGATCCCATATTGGCGTACACT
GCTGGGGCAGAGATTGAGCAGCTCCAATGGTCAGCGACCCAGCCTGACTGGGTCGCTATT
GCATTCTCCACTAAACTGCAGATCCTCAGGGTCTGA

Peptide Sequence

PEP ID

Os02t0524600-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:19178240:19179938:-1 gene:Os02g0524600 transcript:Os02t0524600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRANSPARENT TESTA GLABRA1B, TRANSPARENT TESTA GLABRA 1B description:WD40 repeat protein. (Os02t0524600-01)
Sequence

MGGGGAGGDGEAWADQEQGNGGGRGGGGGEAKRSEIYTYEAGWHIYGMNWSVRRDKKYRL
AIASLLEQHNNHVQVVQLDESSGDIAPVLTFDHPYPPTKTMFVPDPHSVRPDLLATSADH
LRIWRIPSPDEAAAAAAASSNSGSVRCNGTASPDVELRCELNGNRNSDYCGPLTSFDWND
ADPRRIGTSSIDTTCTIWDVEREAVDTQLIAHDKEVYDIAWGGAGVFASVSADGSVRVFD
LRDKEHSTIIYESGSGGSSNSAGADGGAASPTPLVRLGWNKQDPRYMATIIMDSPKVVVL
DIRYPTLPVVELHRHHSPVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGTGSNNGGNGN
GNAAAAAAAEGGLDPILAYTAGAEIEQLQWSATQPDWVAIAFSTKLQILRV

Transcript Sequence

Transcript ID

Os02t0524600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:19178240:19179938:-1 gene:Os02g0524600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRANSPARENT TESTA GLABRA1B, TRANSPARENT TESTA GLABRA 1B description:WD40 repeat protein. (Os02t0524600-01)
Sequence

AGAAAGTAGAACCCCCCCCCCCCCCCCCCCCCAAAAATCCGCATCCCCCACCCAATCCCC
TCCCCCCAACAACTCGGCTTCGGCGGCGGCGGCGCCATGGGAGGAGGCGGCGCGGGTGGG
GACGGCGAGGCGTGGGCGGATCAGGAGCAGGGGAACGGCGGGGGCCGCGGCGGCGGCGGC
GGGGAGGCGAAGCGGTCGGAGATCTACACGTACGAGGCCGGGTGGCACATCTACGGCATG
AACTGGAGCGTGCGGCGCGACAAGAAGTACCGGCTCGCCATCGCCAGCCTGCTCGAGCAG
CACAACAACCACGTCCAGGTGGTCCAGCTCGACGAGTCCTCCGGCGACATCGCCCCCGTC
CTCACCTTCGACCACCCCTACCCTCCCACCAAGACCATGTTCGTCCCGGACCCGCACTCC
GTCCGCCCCGACCTCCTCGCCACCTCCGCCGACCACCTCCGCATCTGGCGCATCCCCTCC
CCGGACGAGGCCGCCGCCGCCGCCGCCGCCAGCTCCAACTCCGGCTCCGTCCGCTGCAAC
GGCACCGCCTCGCCCGACGTCGAGCTGCGCTGCGAGCTCAACGGCAACCGCAACAGCGAC
TACTGCGGCCCGCTCACCTCCTTCGACTGGAACGACGCCGACCCCCGCCGCATCGGGACC
TCCTCCATCGACACCACCTGCACCATCTGGGACGTCGAGCGGGAGGCCGTCGACACCCAG
CTCATTGCCCATGACAAGGAGGTCTACGACATCGCCTGGGGCGGTGCCGGCGTCTTTGCA
TCCGTCTCCGCCGACGGCTCCGTTCGCGTGTTTGATCTCCGGGACAAGGAGCATTCCACA
ATTATCTACGAGTCCGGTTCTGGCGGCAGCTCCAATTCGGCAGGTGCAGATGGCGGCGCT
GCCTCGCCAACACCGCTGGTTAGGTTAGGGTGGAACAAGCAGGACCCTAGGTACATGGCA
ACCATCATCATGGATAGCCCCAAGGTGGTCGTGCTTGATATCCGCTACCCAACACTACCG
GTGGTCGAGCTCCACCGCCACCATTCGCCCGTCAACGCCATAGCATGGGCGCCACACTCC
TCTTGTCACATTTGCACAGCTGGGGATGACTCGCAGGCCCTTATATGGGACCTGTCATCC
ATGGGCACTGGGAGCAACAATGGTGGCAATGGAAATGGCAATGCTGCAGCTGCTGCGGCA
GCTGAGGGCGGTCTTGATCCCATATTGGCGTACACTGCTGGGGCAGAGATTGAGCAGCTC
CAATGGTCAGCGACCCAGCCTGACTGGGTCGCTATTGCATTCTCCACTAAACTGCAGATC
CTCAGGGTCTGATTTCTTTGTTCCAACCCTGTTAGTAAGGGGACATCGACAAGAACAAAG
AAGGCCAGCATGGATAATGAGGTTAGGTGATCAGAGGACATTGTTACTTCAGTCTTATTT
ATTTTAAGTTGTGCACAGATGATATGCGCGCTGAGTTGGTTCTAGTGATATAATAAATTG
TTTCCTACCTAGAAGCTGGAATTGGCAATGAACTGAGCTGTTAGAGTAATTAGCTGCTCT
AGGTTTAGTATTGATGTTAATGTGGATTGTAGTTATGTTTGTTGCTTGTTCTCGAATGTC
CAGCTCCAGTAGGGCGTAGGTTCACCTCTTGACTTCCATGTTGTATTTTGCACTCGCCGT
ATATGCACTTATAAGTTAT