Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0517300-02
CDS Infomation	cds chromosome:IRGSP-1.0:2:18705710:18712350:1 gene:Os02g0517300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1 domain containing protein. (Os02t0517300-01);Topoisomerase II-associated protein PAT1 domain containing protein. (Os02t0517300-02)
Sequence	ATGCGGGGCGTCGAGTCGGATGGCGGCGGCGGCGCGCCTTTCTCCTCCTCCTCCTCCGCG GCCGCTCCAGATAATTTCGATGCCGCGCAGTACTCCTTCTTCGGGAAGGAGCCACTGGAG GGGCTCGAGCTCAGTTGCTTGGAGGATGGCGGCGGCGGCGGTGGTGATGCCAATGGCGGT GGATTCAGTGGAGGAGCAGAAGAAGGGCTGTACCGGCTCTCCTCTGTTGGAGAAGAGATT GATAATCTGAGTAACTTGTCCGATATTGATGATCTTGCGAGCACTTTTGCAAAGTTGAAC CGAACCATTAGTGGAACACGGAATCCTGGTGTTATTGGTGACAGACGATCCATCTCAAGA GGAAGTTCTCTAACTGTTGATTGGGCTGAAGATGTAGAATTTCCTAACTGGGTAGATCAA GACATTTTAGAGGATGAGGAATTTCAGGAAAGTAAAAGATGGTGGTCACAGTCACACACT CTGGTGCAGCAAGGGGATGCCAAACCATTGAGCCGAACATCTTCCTATCCTCAGCAACCA CTGCAGCACCGGGCAAGTGAACCTATCATTCCACCAAAATCTCCTTCATTTACGTCCTTT CCACCGCCAGGTGGTAGATCACCTTATACTTCTCAAGGCCTTACACGCCATGGGAGCATT CCATCACTTGGTGCTGGCCTGCAAATGGGTTCTCCAAGCATGTCCCTTCCAAGTTCTCCA TATCATATAGCTGGACTATCTCATGGACTACCGTATGGAGGGAGCATGTCCTTCGGCACT TCAAATCTGCCTGTAAACAATCCAATGCAAAATGATTGGCCAAGCCAAGCCAATCTTTAT GCTGGGGAGCAATTTAATCTACTGCCGAACATGTTACAGAAACAAATATCACTTCCAAAT AGCCCGATGTCATCACTGTTATTTTCTCAACAGCAGCAGAGATTGGCACAAGTTCAAGTC CAACCATCCCATCAGAATTACCTAAATTTACCACCTCACATATTTTACCAACATCACTCC CCAGAATTAACAGGAAGATTTGATTCTGTTAGCAGTGTTCCTTCATCAAGAGACAAGAGA TCAAGGTCAGGAAGAGGAAAACACAACATACGTTTTTCTCAACCATTGCCTGATACTGGT AATCAAAATGGTGATAGTGGAGGAATAAAATTCAGATCTAAGTACATGTCATCTGAAGAG ATCGAATCTATCTTAAGAATGCAACATTCAGCAAGTCACAGCAGTGATCCTTATGTGGTT GATTATTACCACCAAGCTTGCATCGCGAAAAGGGGTGCCAATTCTAGGCCAAAGGCCAAT TTTGCCCCAACGTCAATGAAAGACTTGCCTTCCAAGTCCCGATCCAGTGGTGACCATCAT GCATATCTTCAGGTTGATGCTGTAGGAAGAGTTTCCTTCTCTTCCATACGTAGGCCTCGT TCTCTTCTTGAAGTTGACCTTCCTTCATCAAGTGATGGTTCTCATGATCAGAAGTCTTCT CTGAGACCATTGGAGAAAGAACCAATGCTGGCCGCTAGAGTCACTGTTGAAGATGCCCTC TGCCTTCTTCTTGAGGTGGATGATATTGACCGTCTGTTGCAGTCTAGTCAGGCACAGGAT AACAGTTTCCAACTGAGGCGAAGACGGCAGGTCCTCCTTGAAGGTTTAGCTGCATCACTT CAGCTTGTTGACCCTCTCGGGCCGAGCACATCAAGCCATTCATCTGGATTGGCTGCTAAG GATGATCTTGTTTTTCTTCGCATTGTTTCTCTTCCTAAAGGACGCAAGTTTTTGTCACGT TACCTTCGACTTCTTACCCCTGGAAGTGAGTTGACCCGTATAGTATGCATGGCTATTTTT CGACATCTGAGGTACTTGTTCGGGGGTTTACCATCAGATTCTAGTGCAGCAGAAACAACA GTTACTCTTGCAAAGACTCTTTCATCTTGTGTGCGCCATATGGAACTAGGTGCTCTTAGT GCTTGCCTTGCTGCTGTGGTCTGTTCACCTGAGCAGCCACCTCTGCGTCCTCTAGCTAGC TCTGCTGGTGATGGGGCTTCTCTTATTATTAAATCAGTACTGGATCGAGCAACTGAGTTA CTGACTGACCAGCATGCCGCAGCCAGCTATACAGTGTCAAACCGGACTCTCTGGCAGGCA TCATTTGATGCTTTCTTTGGACTTCTGACAAAATACTGTCTCAGCAAGTATGAAAGTATT AGGCAGATGTTTACCATGCAGTCACCAGGCTCTGTAATTGGATCTGAGGTCTCCAAAGCA ACCAGCAGGGAGATGCCGGTTGAGTTGCTACGTGCAAGCCTCCCTCATACAAATGATCAG CAACGCCAGCTGCTGCTTGATTTTGCTCAGCGAACCATGCCAGTGACTGGTTTTAATGCC AGCGGTGCAAATGGTGGGCACATCACCTCCGAGTCTGTTCCTGGTTGA

Peptide Sequence

PEP ID	Os02t0517300-02
PEP Infomation	pep chromosome:IRGSP-1.0:2:18705710:18712350:1 gene:Os02g0517300 transcript:Os02t0517300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1 domain containing protein. (Os02t0517300-01);Topoisomerase II-associated protein PAT1 domain containing protein. (Os02t0517300-02)
Sequence	MRGVESDGGGGAPFSSSSSAAAPDNFDAAQYSFFGKEPLEGLELSCLEDGGGGGGDANGG GFSGGAEEGLYRLSSVGEEIDNLSNLSDIDDLASTFAKLNRTISGTRNPGVIGDRRSISR GSSLTVDWAEDVEFPNWVDQDILEDEEFQESKRWWSQSHTLVQQGDAKPLSRTSSYPQQP LQHRASEPIIPPKSPSFTSFPPPGGRSPYTSQGLTRHGSIPSLGAGLQMGSPSMSLPSSP YHIAGLSHGLPYGGSMSFGTSNLPVNNPMQNDWPSQANLYAGEQFNLLPNMLQKQISLPN SPMSSLLFSQQQQRLAQVQVQPSHQNYLNLPPHIFYQHHSPELTGRFDSVSSVPSSRDKR SRSGRGKHNIRFSQPLPDTGNQNGDSGGIKFRSKYMSSEEIESILRMQHSASHSSDPYVV DYYHQACIAKRGANSRPKANFAPTSMKDLPSKSRSSGDHHAYLQVDAVGRVSFSSIRRPR SLLEVDLPSSSDGSHDQKSSLRPLEKEPMLAARVTVEDALCLLLEVDDIDRLLQSSQAQD NSFQLRRRRQVLLEGLAASLQLVDPLGPSTSSHSSGLAAKDDLVFLRIVSLPKGRKFLSR YLRLLTPGSELTRIVCMAIFRHLRYLFGGLPSDSSAAETTVTLAKTLSSCVRHMELGALS ACLAAVVCSPEQPPLRPLASSAGDGASLIIKSVLDRATELLTDQHAAASYTVSNRTLWQA SFDAFFGLLTKYCLSKYESIRQMFTMQSPGSVIGSEVSKATSREMPVELLRASLPHTNDQ QRQLLLDFAQRTMPVTGFNASGANGGHITSESVPG

Transcript Sequence

Transcript ID	Os02t0517300-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:18705710:18712350:1 gene:Os02g0517300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Topoisomerase II-associated protein PAT1 domain containing protein. (Os02t0517300-01);Topoisomerase II-associated protein PAT1 domain containing protein. (Os02t0517300-02)
Sequence	TCTCTTTCCTCCTCCTCCTCGCGCAGCCGCGCTCAGATCCAAAGCCGCGCGCGGGGGAGG GAGGGAGGAATCGCGGTGCCAAGAAACGAAGCCCTAGCCCCCCCTAGATGCGCGCCGCCG CTTGCTGCTGCTGCTGCTGCTAGGGTTCTTGTACGGAGATGCGGGGCGTCGAGTCGGATG GCGGCGGCGGCGCGCCTTTCTCCTCCTCCTCCTCCGCGGCCGCTCCAGATAATTTCGATG CCGCGCAGTACTCCTTCTTCGGGAAGGAGCCACTGGAGGGGCTCGAGCTCAGTTGCTTGG AGGATGGCGGCGGCGGCGGTGGTGATGCCAATGGCGGTGGATTCAGTGGAGGAGCAGAAG AAGGGCTGTACCGGCTCTCCTCTGTTGGAGAAGAGATTGATAATCTGAGTAACTTGTCCG ATATTGATGATCTTGCGAGCACTTTTGCAAAGTTGAACCGAACCATTAGTGGAACACGGA ATCCTGGTGTTATTGGTGACAGACGATCCATCTCAAGAGGAAGTTCTCTAACTGTTGATT GGGCTGAAGATGTAGAATTTCCTAACTGGGTAGATCAAGACATTTTAGAGGATGAGGAAT TTCAGGAAAGTAAAAGATGGTGGTCACAGTCACACACTCTGGTGCAGCAAGGGGATGCCA AACCATTGAGCCGAACATCTTCCTATCCTCAGCAACCACTGCAGCACCGGGCAAGTGAAC CTATCATTCCACCAAAATCTCCTTCATTTACGTCCTTTCCACCGCCAGGTGGTAGATCAC CTTATACTTCTCAAGGCCTTACACGCCATGGGAGCATTCCATCACTTGGTGCTGGCCTGC AAATGGGTTCTCCAAGCATGTCCCTTCCAAGTTCTCCATATCATATAGCTGGACTATCTC ATGGACTACCGTATGGAGGGAGCATGTCCTTCGGCACTTCAAATCTGCCTGTAAACAATC CAATGCAAAATGATTGGCCAAGCCAAGCCAATCTTTATGCTGGGGAGCAATTTAATCTAC TGCCGAACATGTTACAGAAACAAATATCACTTCCAAATAGCCCGATGTCATCACTGTTAT TTTCTCAACAGCAGCAGAGATTGGCACAAGTTCAAGTCCAACCATCCCATCAGAATTACC TAAATTTACCACCTCACATATTTTACCAACATCACTCCCCAGAATTAACAGGAAGATTTG ATTCTGTTAGCAGTGTTCCTTCATCAAGAGACAAGAGATCAAGGTCAGGAAGAGGAAAAC ACAACATACGTTTTTCTCAACCATTGCCTGATACTGGTAATCAAAATGGTGATAGTGGAG GAATAAAATTCAGATCTAAGTACATGTCATCTGAAGAGATCGAATCTATCTTAAGAATGC AACATTCAGCAAGTCACAGCAGTGATCCTTATGTGGTTGATTATTACCACCAAGCTTGCA TCGCGAAAAGGGGTGCCAATTCTAGGCCAAAGGCCAATTTTGCCCCAACGTCAATGAAAG ACTTGCCTTCCAAGTCCCGATCCAGTGGTGACCATCATGCATATCTTCAGGTTGATGCTG TAGGAAGAGTTTCCTTCTCTTCCATACGTAGGCCTCGTTCTCTTCTTGAAGTTGACCTTC CTTCATCAAGTGATGGTTCTCATGATCAGAAGTCTTCTCTGAGACCATTGGAGAAAGAAC CAATGCTGGCCGCTAGAGTCACTGTTGAAGATGCCCTCTGCCTTCTTCTTGAGGTGGATG ATATTGACCGTCTGTTGCAGTCTAGTCAGGCACAGGATAACAGTTTCCAACTGAGGCGAA GACGGCAGGTCCTCCTTGAAGGTTTAGCTGCATCACTTCAGCTTGTTGACCCTCTCGGGC CGAGCACATCAAGCCATTCATCTGGATTGGCTGCTAAGGATGATCTTGTTTTTCTTCGCA TTGTTTCTCTTCCTAAAGGACGCAAGTTTTTGTCACGTTACCTTCGACTTCTTACCCCTG GAAGTGAGTTGACCCGTATAGTATGCATGGCTATTTTTCGACATCTGAGGTACTTGTTCG GGGGTTTACCATCAGATTCTAGTGCAGCAGAAACAACAGTTACTCTTGCAAAGACTCTTT CATCTTGTGTGCGCCATATGGAACTAGGTGCTCTTAGTGCTTGCCTTGCTGCTGTGGTCT GTTCACCTGAGCAGCCACCTCTGCGTCCTCTAGCTAGCTCTGCTGGTGATGGGGCTTCTC TTATTATTAAATCAGTACTGGATCGAGCAACTGAGTTACTGACTGACCAGCATGCCGCAG CCAGCTATACAGTGTCAAACCGGACTCTCTGGCAGGCATCATTTGATGCTTTCTTTGGAC TTCTGACAAAATACTGTCTCAGCAAGTATGAAAGTATTAGGCAGATGTTTACCATGCAGT CACCAGGCTCTGTAATTGGATCTGAGGTCTCCAAAGCAACCAGCAGGGAGATGCCGGTTG AGTTGCTACGTGCAAGCCTCCCTCATACAAATGATCAGCAACGCCAGCTGCTGCTTGATT TTGCTCAGCGAACCATGCCAGTGACTGGTTTTAATGCCAGCGGTGCAAATGGTGGGCACA TCACCTCCGAGTCTGTTCCTGGTTGATTTAGCTCAAGATGCCAAAAAGTGTAGATTGTCA ATGCTTAAAGGACTTAAATGTGCTTGTCTTTGGATGATAATTCTTTTATATCTGGAGACA TGCATAACCCCTTCATAAGGGATGAACTAGCCGTCTCGTTGGGGCGAATTTTAGCTTTTA ACATAACATTCATATGCTCCCAGTGAAGAAGACATCCAAGACTAGTGGGTTTAGCAGCAG TGGTTGTACAGGCTCTGGTACTTTGAGGCCTTCCTGTCTGTCTTTTTACTAGTGTGGAAG GTTCCTAGCGTCAAGTGCGTAGTAGTCTGGTCTTATCATGTTTTAATTAGGATCAAAAGT GTGTTGGGGATAATGAAGTGGTGATGTTTGTTAGGTTTCTGGAAAGATATTTAAAATGTC ATGGAGATGGCCAGTGTTTCCAGGTACCTACTGACACTATAGTGAGGATACTGGAAACTG GGGCTATATTATCTCTTATTTATACATGGTTACAATTTGTTGTCATTTTATTTCTTGCCT CCAGGTTACTCTTTGCTCAAAAACATTTTTTTAGGGGGAAACTCTGGTTGCATCATATAC TTTTTACCAGGATTAAGGCTGCCTGCCTTTGTTGTAAGTTTGTGTACAGTAGTTATTAGT TGCAGCCTTAAACTGGATCATTTGAATGAAGTAGTTGCAGTTAACCTCGTGTGATGGTTA GATGTATCAGTAATTCTGCATGAAACCCTGAGCAAATGTTAGCCTCTTCTGGATTGGACG AATTCATGGAAATTTTATGGAAATTAAGCTGTACATTATGCGATTCTTGCATTCGGAAGA AGCCAATATCAATGTGTGACAACAGTTCTCGGTTTATG