Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0516600-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:18649367:18653201:-1 gene:Os02g0516600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0516600-01);Similar to zinc finger, C3HC4 type family protein. (Os02t0516600-02)
Sequence

GTCCAGCATTTTCATGTTGGTGACAATGTGACATTTACACTTTTGAGCCGCTCAAAAAAT
TCACTCACTCCTTCTATTAAGAACCTCACTGATGAATCTACTATAGACGAAGATCCTTGC
AGTGCATTCTCCAAGTTCATTTTGACGTCTGATGTGGAACTTTCTGTTAGAGAGGCAAAA
ACAGATCTTGTTAATTGGTTGCATATGGCAGATTTAGGCCTTGTGGATGACTTGGAGAAA
CTTCCATACGTTTCTACCGCTTTGGAGCAGCTAGAAGAACGGATGAAATATTGGAGTGAG
TACAGAAATTTTAGTGTCAGCCCTCCCCTAAAAGACAGCTTCTCACCTGTAACTAGTTCC
AAATCAAGGAACCCTAATAATGCACAATCTTCACGCCAGAACAGTGAACACAAGCTATCT
CCTCTATCAGATGAAGATATGATTGCTGGTGTTTCGGAGCTCTGTATTTCACCTGAATCA
AATAAAATCTTTAATAAAGGAATGCCATCGAAAACAGAAGAGAGATGTATGGCTCCCATA
GATTCAAATGAGAATGATACTTATAATTTTTACCAGGTATCTGATGGCCAACACCTAATT
CTTCATCCGCTAAACATGAAATGCCTTATAAACCATTATGGAAGTTCTGATATGCTCCCA
CCAAGAATACATGGAAAAATCTTGGAGCTAGAAACTGTAACACAATCCGAAGCTACAAGA
AAGCGCTATCGTTATCTAAGTCACTTCTCATTGACAACAACGTTCCAGTTCTGTGAAATT
GACCTGGGTGATATGCTGCCTCCTAGCTCATTAGCTCCATTCATGGATGAAATCAAGAAG
CGAGAGAAACAGAGGAAACGAACTGCCAAGAAGGAAGAAAGCGATAGAGTGAAAGCCGAA
GTTGCTGCTGCTGCACAGGCATCTGCAATGCTGTTTGAACATACAAGCTTCTCTCCCAGT
AGTGGGCCACATGGCGATTTTATGTTCTCTCTGGATGACTTTGAAGCTCTTGGAAACAAT
GCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAGAAAGCTTTTCTCCGATGTTGCACGG
CTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCTAAGAGTTGAATCTGGGGATTTGACT
GGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCC
AGCATCATTTCCTCCACTAGAGCGTCAGACAATAGCCTGGACACGCACAAACCAAATGTA
GTCGGGAAGAAAGGCAAGAAACCCACCAAAGTGCTCTTGTCCACTGGCGGTGGCCGCCGA
TACTGA

Peptide Sequence

PEP ID

Os02t0516600-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:18649367:18653201:-1 gene:Os02g0516600 transcript:Os02t0516600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0516600-01);Similar to zinc finger, C3HC4 type family protein. (Os02t0516600-02)
Sequence

VQHFHVGDNVTFTLLSRSKNSLTPSIKNLTDESTIDEDPCSAFSKFILTSDVELSVREAK
TDLVNWLHMADLGLVDDLEKLPYVSTALEQLEERMKYWSEYRNFSVSPPLKDSFSPVTSS
KSRNPNNAQSSRQNSEHKLSPLSDEDMIAGVSELCISPESNKIFNKGMPSKTEERCMAPI
DSNENDTYNFYQVSDGQHLILHPLNMKCLINHYGSSDMLPPRIHGKILELETVTQSEATR
KRYRYLSHFSLTTTFQFCEIDLGDMLPPSSLAPFMDEIKKREKQRKRTAKKEESDRVKAE
VAAAAQASAMLFEHTSFSPSSGPHGDFMFSLDDFEALGNNAGPSTSPPASERKLFSDVAR
LGFASAQDSPPLRVESGDLTGKSESTGEQGPAATPALSFASIISSTRASDNSLDTHKPNV
VGKKGKKPTKVLLSTGGGRRY

Transcript Sequence

Transcript ID

Os02t0516600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:18649367:18653201:-1 gene:Os02g0516600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0516600-01);Similar to zinc finger, C3HC4 type family protein. (Os02t0516600-02)
Sequence

AAGTCCAGCATTTTCATGTTGGTGACAATGTGACATTTACACTTTTGAGCCGCTCAAAAA
ATTCACTCACTCCTTCTATTAAGAACCTCACTGATGAATCTACTATAGACGAAGATCCTT
GCAGTGCATTCTCCAAGTTCATTTTGACGTCTGATGTGGAACTTTCTGTTAGAGAGGCAA
AAACAGATCTTGTTAATTGGTTGCATATGGCAGATTTAGGCCTTGTGGATGACTTGGAGA
AACTTCCATACGTTTCTACCGCTTTGGAGCAGCTAGAAGAACGGATGAAATATTGGAGTG
AGTACAGAAATTTTAGTGTCAGCCCTCCCCTAAAAGACAGCTTCTCACCTGTAACTAGTT
CCAAATCAAGGAACCCTAATAATGCACAATCTTCACGCCAGAACAGTGAACACAAGCTAT
CTCCTCTATCAGATGAAGATATGATTGCTGGTGTTTCGGAGCTCTGTATTTCACCTGAAT
CAAATAAAATCTTTAATAAAGGAATGCCATCGAAAACAGAAGAGAGATGTATGGCTCCCA
TAGATTCAAATGAGAATGATACTTATAATTTTTACCAGGTATCTGATGGCCAACACCTAA
TTCTTCATCCGCTAAACATGAAATGCCTTATAAACCATTATGGAAGTTCTGATATGCTCC
CACCAAGAATACATGGAAAAATCTTGGAGCTAGAAACTGTAACACAATCCGAAGCTACAA
GAAAGCGCTATCGTTATCTAAGTCACTTCTCATTGACAACAACGTTCCAGTTCTGTGAAA
TTGACCTGGGTGATATGCTGCCTCCTAGCTCATTAGCTCCATTCATGGATGAAATCAAGA
AGCGAGAGAAACAGAGGAAACGAACTGCCAAGAAGGAAGAAAGCGATAGAGTGAAAGCCG
AAGTTGCTGCTGCTGCACAGGCATCTGCAATGCTGTTTGAACATACAAGCTTCTCTCCCA
GTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGATGACTTTGAAGCTCTTGGAAACA
ATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAGAAAGCTTTTCTCCGATGTTGCAC
GGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCTAAGAGTTGAATCTGGGGATTTGA
CTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGCAACACCCGCATTATCCTTTG
CCAGCATCATTTCCTCCACTAGAGCGTCAGACAATAGCCTGGACACGCACAAACCAAATG
TAGTCGGGAAGAAAGGCAAGAAACCCACCAAAGTGCTCTTGTCCACTGGCGGTGGCCGCC
GATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTGGCTGTTTCCTATAA
GCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAG
CAGCTTTTTCTCCCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACT
GTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGA
GAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGC