Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0515200-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:18575251:18581665:-1 gene:Os02g0515200 gene_biotype:protein_coding transcript_biotype:protein_coding description:BAR domain containing protein. (Os02t0515200-01);Similar to hydroxyproline-rich glycoprotein family protein. (Os02t0515200-02);Hypothetical conserved gene. (Os02t0515200-03)
Sequence	ATGAAGTCGCCGTTGCTGAGGCTGAAGGGCTTCGGCCACCACCAGCAGCACAGGGAGAGG AAGTCGCGGCAGCCGCAGCCGCAGCCGACGCCGGCCAAGCTCGACGAGCTCGCCGACGCC GCCCAGGATGTGGAAGAAATGAGGAACTGTTATGATGGCTTCATTTCAGCAGCAGCTGCT ACAACGAATGGCGTATATGAGTTTGCTGAGGCTTTAGAGGAACTGGGAAGTTGCTTACTT GCAAAACCTGTGCTAAATGACGACGACGACGATAGTGGCAGAGTGTTGATGATGCTCGGT AAGGCCCAATATGAACTACAGAAATCTGCGGATAGATACCGAACAAATATCATCCACACA ATCACAACCCCATCTGAATCTCTTCTTAAGGAGCTGCAAACTTTAGAGGAAATGAAACAA CAATGCGACATGAAAAGGGACGCATATGAAACCATGAGGGCATCCTATAGTGACAAAGGA GGGTCAAGGCATTCCAAAACCGAATCATTCTCCACAGAACAACTGGACGCTTCTTTTCTT GAATACCAAGAGGATTCAGCACTTTTCACATTTCGCTTGAAATCATTAAAGCAAGGGCAA TTCCAGAGCCTGTTAACACAGGCTGCTCGCCATCATGCTGCTCAGTTAAGTTTTTTCAGG AAAGGACTCAAATGTCTCGAAGCACTTGAACCTCGTGTCAAAGCAATATCTGAGAAACAT CACATTGACTATAACTTCAGCGGTCTAGAGGATGATGGTTCTGACAATGATGGCTACAGT ACTTACGATTCTTGTAGTGATGACGGAGAACTGAGTTTCGACTATGAAATAAACGATAGA GACCAAGATTTTCTTACTTCGAGAGGTTCAATGGATTTTGATAAAAGTGATCAGACTACT TCACCAAAGCCAATCAAAGAAAACAAGCAGGAAGAGGCAAAACAAGCAGAGGCCGAAATA GTGTTCCCGCAATTGAAGCCCGAGTTCGCTACACATTCAGCTCCACTTTTTGCTGGCAAT TTGCTTGATGAAACTGACAGGCTTCGGCAAATGAGGCCATCCTCAACCAAACACTCGTAC AGGCTCCCTACCCCAGTTGGTGCTGACAACCCCGTACCATCAGGTTCACACAGGCTGCAT CATTCCGCGCAATTCTTCGAAACAAAGCCCCATGCCCCGACGAATCTGTGGCACTCGTCT CCTCTGACAAAAGACTACAATGGCGCCATGCACAACGCCGCTACCAAGCCGTCGTCATCA TCAAGCACCGATGATCTGAAGAAGCTGAAGAGGGAGTCATGGTCAGGTCCGATCCCGATC AAGGCCGGGTCAGGCGGCAAGCCCTTCTCTCAGGCTGACCACAGGCCATCGCCCACCATG GCTTACCCTGGTGCAATGCCTGCGGCCAAGCCGCACGTCCGGCACGCGTCGTCGTCGTCT GTGTCACCCAAGGTTTCCCCAAAGATGTCACCGGTGCCACCAGCATCGTCGCTGAAGATC AGCGAGCTCCACCTGCTGCCGCTGCCTCCAGCCAATGTGGATCCTGTCCGGCCTTCTGGT CTGGTCGGCTACTCCGGCCCTCTGGTGTCGAAGCGCGCGCCGACGCCGGCCCGTGCCTCC CCGAAGGCGTCAAGAACGGCGTCGCCGCTGCCTAGGCCGCCTGCGGCCTTGGCAAGGAGC TACTCCATACCTTCCAACAGCCAGAGGACGCCCATCATCACTGTGAATAAGCTCTTGGAG GCTAAGCATAGCAGGGAGGGCAGTGATGCTTCTTCCCCACCACTGACTCCATTGTCATTG TCTGATTTGTGCCACCAGGAGAAGGCAGGGAAGGCAGCTGCAGGCAACACAAGGAGAAAG GAAACCTTGTGA

Peptide Sequence

PEP ID	Os02t0515200-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:18575251:18581665:-1 gene:Os02g0515200 transcript:Os02t0515200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:BAR domain containing protein. (Os02t0515200-01);Similar to hydroxyproline-rich glycoprotein family protein. (Os02t0515200-02);Hypothetical conserved gene. (Os02t0515200-03)
Sequence	MKSPLLRLKGFGHHQQHRERKSRQPQPQPTPAKLDELADAAQDVEEMRNCYDGFISAAAA TTNGVYEFAEALEELGSCLLAKPVLNDDDDDSGRVLMMLGKAQYELQKSADRYRTNIIHT ITTPSESLLKELQTLEEMKQQCDMKRDAYETMRASYSDKGGSRHSKTESFSTEQLDASFL EYQEDSALFTFRLKSLKQGQFQSLLTQAARHHAAQLSFFRKGLKCLEALEPRVKAISEKH HIDYNFSGLEDDGSDNDGYSTYDSCSDDGELSFDYEINDRDQDFLTSRGSMDFDKSDQTT SPKPIKENKQEEAKQAEAEIVFPQLKPEFATHSAPLFAGNLLDETDRLRQMRPSSTKHSY RLPTPVGADNPVPSGSHRLHHSAQFFETKPHAPTNLWHSSPLTKDYNGAMHNAATKPSSS SSTDDLKKLKRESWSGPIPIKAGSGGKPFSQADHRPSPTMAYPGAMPAAKPHVRHASSSS VSPKVSPKMSPVPPASSLKISELHLLPLPPANVDPVRPSGLVGYSGPLVSKRAPTPARAS PKASRTASPLPRPPAALARSYSIPSNSQRTPIITVNKLLEAKHSREGSDASSPPLTPLSL SDLCHQEKAGKAAAGNTRRKETL

Transcript Sequence

Transcript ID	Os02t0515200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:18575251:18581665:-1 gene:Os02g0515200 gene_biotype:protein_coding transcript_biotype:protein_coding description:BAR domain containing protein. (Os02t0515200-01);Similar to hydroxyproline-rich glycoprotein family protein. (Os02t0515200-02);Hypothetical conserved gene. (Os02t0515200-03)
Sequence	ATAGAGGAACAACGAAAGATCAAGAGAGAGAGAGAGAGGCGAAATCAAGGCCCTTTTCTT TTCTTGCGATTTCCACCATCGCCGCCCAAAGCAAAAGATTAGATAAGCTTAATCCCCACA AAATTATAAGGATTGTTAGACAGGAGGAGTAATCGATCAGAGAGGGGAGAGGGAAGAGAG ATCGATCGATGAAGTCGCCGTTGCTGAGGCTGAAGGGCTTCGGCCACCACCAGCAGCACA GGGAGAGGAAGTCGCGGCAGCCGCAGCCGCAGCCGACGCCGGCCAAGCTCGACGAGCTCG CCGACGCCGCCCAGGATGTGGAAGAAATGAGGAACTGTTATGATGGCTTCATTTCAGCAG CAGCTGCTACAACGAATGGCGTATATGAGTTTGCTGAGGCTTTAGAGGAACTGGGAAGTT GCTTACTTGCAAAACCTGTGCTAAATGACGACGACGACGATAGTGGCAGAGTGTTGATGA TGCTCGGTAAGGCCCAATATGAACTACAGAAATCTGCGGATAGATACCGAACAAATATCA TCCACACAATCACAACCCCATCTGAATCTCTTCTTAAGGAGCTGCAAACTTTAGAGGAAA TGAAACAACAATGCGACATGAAAAGGGACGCATATGAAACCATGAGGGCATCCTATAGTG ACAAAGGAGGGTCAAGGCATTCCAAAACCGAATCATTCTCCACAGAACAACTGGACGCTT CTTTTCTTGAATACCAAGAGGATTCAGCACTTTTCACATTTCGCTTGAAATCATTAAAGC AAGGGCAATTCCAGAGCCTGTTAACACAGGCTGCTCGCCATCATGCTGCTCAGTTAAGTT TTTTCAGGAAAGGACTCAAATGTCTCGAAGCACTTGAACCTCGTGTCAAAGCAATATCTG AGAAACATCACATTGACTATAACTTCAGCGGTCTAGAGGATGATGGTTCTGACAATGATG GCTACAGTACTTACGATTCTTGTAGTGATGACGGAGAACTGAGTTTCGACTATGAAATAA ACGATAGAGACCAAGATTTTCTTACTTCGAGAGGTTCAATGGATTTTGATAAAAGTGATC AGACTACTTCACCAAAGCCAATCAAAGAAAACAAGCAGGAAGAGGCAAAACAAGCAGAGG CCGAAATAGTGTTCCCGCAATTGAAGCCCGAGTTCGCTACACATTCAGCTCCACTTTTTG CTGGCAATTTGCTTGATGAAACTGACAGGCTTCGGCAAATGAGGCCATCCTCAACCAAAC ACTCGTACAGGCTCCCTACCCCAGTTGGTGCTGACAACCCCGTACCATCAGGTTCACACA GGCTGCATCATTCCGCGCAATTCTTCGAAACAAAGCCCCATGCCCCGACGAATCTGTGGC ACTCGTCTCCTCTGACAAAAGACTACAATGGCGCCATGCACAACGCCGCTACCAAGCCGT CGTCATCATCAAGCACCGATGATCTGAAGAAGCTGAAGAGGGAGTCATGGTCAGGTCCGA TCCCGATCAAGGCCGGGTCAGGCGGCAAGCCCTTCTCTCAGGCTGACCACAGGCCATCGC CCACCATGGCTTACCCTGGTGCAATGCCTGCGGCCAAGCCGCACGTCCGGCACGCGTCGT CGTCGTCTGTGTCACCCAAGGTTTCCCCAAAGATGTCACCGGTGCCACCAGCATCGTCGC TGAAGATCAGCGAGCTCCACCTGCTGCCGCTGCCTCCAGCCAATGTGGATCCTGTCCGGC CTTCTGGTCTGGTCGGCTACTCCGGCCCTCTGGTGTCGAAGCGCGCGCCGACGCCGGCCC GTGCCTCCCCGAAGGCGTCAAGAACGGCGTCGCCGCTGCCTAGGCCGCCTGCGGCCTTGG CAAGGAGCTACTCCATACCTTCCAACAGCCAGAGGACGCCCATCATCACTGTGAATAAGC TCTTGGAGGCTAAGCATAGCAGGGAGGGCAGTGATGCTTCTTCCCCACCACTGACTCCAT TGTCATTGTCTGATTTGTGCCACCAGGAGAAGGCAGGGAAGGCAGCTGCAGGCAACACAA GGAGAAAGGAAACCTTGTGATACACCCGTCAAATTCGAACCATTGCTGGACAATTTTGTT TGTAAGTTAGTGGTGTATTGTAGGTTTTTGTGTTCATAATATTCTTTCGTTTTGCCACCT GCCTTGTAAATAAAAAGAAATAAAGGTGGCAAAGCAATGTAAGTATGTAACACATTCTTT AACGCTTTTTTTTTTTTTTTGGTTTAGCTATCTACACTAGTTCTTTTGGTTCAGAAAATC TGAGTTAGCAAGGGCATGAACAGTGGTTTTACAACAGGTTGTGCTAGTTATCTGAAATAA CAGATATGTATCATTGATGATTCGATTCTATAGATTTTACCTAGAATGGTATAC