Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0480900-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:16537356:16545691:-1 gene:Os02g0480900 gene_biotype:protein_coding transcript_biotype:protein_coding description:LsmAD domain domain containing protein. (Os02t0480900-01);Hypothetical conserved gene. (Os02t0480900-02);Hypothetical conserved gene. (Os02t0480900-03)
Sequence

ATGAATCACCCACAGCAAACTATGCCTCCTAGGGCTTCTGCCAATGGATTTCCCCATCGG
AAGCTTGACAGGGAGGGTAGTGGAAGGCATGACAATAAAACACAGTTGCTGAGATCTTCA
TCTGGTGGTTTTAGTGGTGCAGAAAATGGAGGCAAACTAGGACATGGAAGCCCTTCAAGG
GATCGACTAATATATGTTTTGACACAACTTATTGGACAACATGTGGATGTGCATGTGAAA
AATGGCTCTATTATCTCCGGAATCCTACATGCAACAAACTCTGACAAAGACTTAGGAGTT
ATCATGAAAATGGCACAGGTGATAAAGGATGGTTCTGCCAGGGGACAGAAAAGTGCAGCT
GATGTTGTAAAGAAGCCTGAGACTATGATAATACCAGGAAGGGAGCTTGTCCAAATTCTT
GCCAAGGATGTAGCACTTGGTGGAGATGAGCTGCCAAAAGGTCCTTCTCAAGAAAAAAGG
AAGGACTTAATGATAGACTCTGCGATTTCTCGCTCTCATTATCCTGAGGAGAGGGAGCTT
GAGCGCTGGGCACCGGATGAAGGGGATTCAGAGTGCATCGAATTGGAAAAATATGACAGA
AAGGGGAACAGGAGCTGGGACCAGTTTGAAACAAATGCAGCTTTGTTTGGGGTAAAGAGT
ACTTTCAATGAAGAACTTTATACCACAAAGCTAGAGAGAGGTCCTCACATGAGAGAGCTT
GAAAAGCATGCTTCAAGAATAGCTAGAGAAATAGAGGGAGAAGATACAAAAGATATGCAT
CTTGCTGAGGAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAA
TATTCAGCGGTGCGCAGAGATACAGACAATACCAAATTTAAGTCATCTACAAATGTCTTG
AGCAATACAAATCAAGTTGATTCACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTG
TTATCAACTGCGGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACT
AACAATGTTAGCCAGTTAGTATCTCAGTCCCAGCTGAATAAACTTTTGCCCATTGATGAA
AGCAGGTTGGATGACAAACTGACCAAAGATAGCAGTGGTAATAGGGACACAAGCAATTTG
CAAACTGAGAATATTATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGACTTGGAAGTG
CCATCTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGGTCAAGCAAAGAAATCCTCA
GAAAGTCTACCTGCAGATTCTTCTTTGTCTAGAAAAGTTCCTTCTTCGGGGGAATATGTG
AATTCCTCCCAAGGACCTGGTAGTTCTACATCATCAACATCTGAGCGCATTGCTGCAAGC
TCAGTTGCATGTGCTCCAGGCTTGTCCCCGAGCTCTTCAATGGGTTCTCTTAGCTCAGAA
AAATCATCTTTGAACCCGAATGCTAAGGAATTCAAGCTGAACCCTAATGCTAAGAGTTTC
ACTCCATCAACTTCTGTGAGGCCTCCACAACCTCCAGCATCTGATGGACCATACTACTAT
GCTAATAACATGCCTACAGCACCTCTTGGACCTCCAATGTTTCCACCGGCCTATGGTGGA
CAGCCTATGGTGTACAATGCTCAGCCTGGACCTTCGCCCCAAGGTTACATGCATCCTGCT
GGGCCACAGTATGGGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCA
CCTGAGATGCAACAATACAGAGGGAGAAACTTCTAG

Peptide Sequence

PEP ID

Os02t0480900-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:16537356:16545691:-1 gene:Os02g0480900 transcript:Os02t0480900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:LsmAD domain domain containing protein. (Os02t0480900-01);Hypothetical conserved gene. (Os02t0480900-02);Hypothetical conserved gene. (Os02t0480900-03)
Sequence

MNHPQQTMPPRASANGFPHRKLDREGSGRHDNKTQLLRSSSGGFSGAENGGKLGHGSPSR
DRLIYVLTQLIGQHVDVHVKNGSIISGILHATNSDKDLGVIMKMAQVIKDGSARGQKSAA
DVVKKPETMIIPGRELVQILAKDVALGGDELPKGPSQEKRKDLMIDSAISRSHYPEEREL
ERWAPDEGDSECIELEKYDRKGNRSWDQFETNAALFGVKSTFNEELYTTKLERGPHMREL
EKHASRIAREIEGEDTKDMHLAEERGLYLDDDFDHDEEIKYSAVRRDTDNTKFKSSTNVL
SNTNQVDSLTRAGNTNPKALLSTADEESSSHLFGTDLPVTNNVSQLVSQSQLNKLLPIDE
SRLDDKLTKDSSGNRDTSNLQTENIISEGGRSSISEDLEVPSSSSHASEPSSSGQAKKSS
ESLPADSSLSRKVPSSGEYVNSSQGPGSSTSSTSERIAASSVACAPGLSPSSSMGSLSSE
KSSLNPNAKEFKLNPNAKSFTPSTSVRPPQPPASDGPYYYANNMPTAPLGPPMFPPAYGG
QPMVYNAQPGPSPQGYMHPAGPQYGQQMMMGQTRPVYYYAPEMQQYRGRNF

Transcript Sequence

Transcript ID

Os02t0480900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:16537356:16545691:-1 gene:Os02g0480900 gene_biotype:protein_coding transcript_biotype:protein_coding description:LsmAD domain domain containing protein. (Os02t0480900-01);Hypothetical conserved gene. (Os02t0480900-02);Hypothetical conserved gene. (Os02t0480900-03)
Sequence

GCGGACCATCGATTCGCTCGGTCTTTCGCCTCCTCCTCCCTTTTGCCTTTGCCTCCCTCA
CCGCGGCGGCTGCGGCGGCGAGCACCACCCACCCCCTCTCCTCTCCCCCCCCTCCCGCCG
CCCGGAGCTTAAGCTAGGGTTTCCACCGCCCGAGCCTGCGCTCCCTCCGTCGCCGCCGCC
CGCCCGCCCGCCCGCCTTCCCGCTCGCCCGCTCGCGCGCCGCTTCCGGTTCCCCACGCGC
ACCGATCCGGCGGTGACCCCCCCGAAACCCTAGGGTTTCTCCGCGGCGCAGGAGCTATGA
ATCACCCACAGCAAACTATGCCTCCTAGGGCTTCTGCCAATGGATTTCCCCATCGGAAGC
TTGACAGGGAGGGTAGTGGAAGGCATGACAATAAAACACAGTTGCTGAGATCTTCATCTG
GTGGTTTTAGTGGTGCAGAAAATGGAGGCAAACTAGGACATGGAAGCCCTTCAAGGGATC
GACTAATATATGTTTTGACACAACTTATTGGACAACATGTGGATGTGCATGTGAAAAATG
GCTCTATTATCTCCGGAATCCTACATGCAACAAACTCTGACAAAGACTTAGGAGTTATCA
TGAAAATGGCACAGGTGATAAAGGATGGTTCTGCCAGGGGACAGAAAAGTGCAGCTGATG
TTGTAAAGAAGCCTGAGACTATGATAATACCAGGAAGGGAGCTTGTCCAAATTCTTGCCA
AGGATGTAGCACTTGGTGGAGATGAGCTGCCAAAAGGTCCTTCTCAAGAAAAAAGGAAGG
ACTTAATGATAGACTCTGCGATTTCTCGCTCTCATTATCCTGAGGAGAGGGAGCTTGAGC
GCTGGGCACCGGATGAAGGGGATTCAGAGTGCATCGAATTGGAAAAATATGACAGAAAGG
GGAACAGGAGCTGGGACCAGTTTGAAACAAATGCAGCTTTGTTTGGGGTAAAGAGTACTT
TCAATGAAGAACTTTATACCACAAAGCTAGAGAGAGGTCCTCACATGAGAGAGCTTGAAA
AGCATGCTTCAAGAATAGCTAGAGAAATAGAGGGAGAAGATACAAAAGATATGCATCTTG
CTGAGGAGAGGGGTTTATATTTGGATGATGACTTTGACCATGATGAAGAGATAAAATATT
CAGCGGTGCGCAGAGATACAGACAATACCAAATTTAAGTCATCTACAAATGTCTTGAGCA
ATACAAATCAAGTTGATTCACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTAT
CAACTGCGGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACA
ATGTTAGCCAGTTAGTATCTCAGTCCCAGCTGAATAAACTTTTGCCCATTGATGAAAGCA
GGTTGGATGACAAACTGACCAAAGATAGCAGTGGTAATAGGGACACAAGCAATTTGCAAA
CTGAGAATATTATATCTGAAGGTGGCAGGTCATCGATTTCTGAAGACTTGGAAGTGCCAT
CTTCAAGCTCGCACGCTTCTGAGCCTTCATCATCTGGTCAAGCAAAGAAATCCTCAGAAA
GTCTACCTGCAGATTCTTCTTTGTCTAGAAAAGTTCCTTCTTCGGGGGAATATGTGAATT
CCTCCCAAGGACCTGGTAGTTCTACATCATCAACATCTGAGCGCATTGCTGCAAGCTCAG
TTGCATGTGCTCCAGGCTTGTCCCCGAGCTCTTCAATGGGTTCTCTTAGCTCAGAAAAAT
CATCTTTGAACCCGAATGCTAAGGAATTCAAGCTGAACCCTAATGCTAAGAGTTTCACTC
CATCAACTTCTGTGAGGCCTCCACAACCTCCAGCATCTGATGGACCATACTACTATGCTA
ATAACATGCCTACAGCACCTCTTGGACCTCCAATGTTTCCACCGGCCTATGGTGGACAGC
CTATGGTGTACAATGCTCAGCCTGGACCTTCGCCCCAAGGTTACATGCATCCTGCTGGGC
CACAGTATGGGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTG
AGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCGCTGCCATGTT
TGAAAGTTGCAGCTATACCCGTCAAAGGGATGCTAACCAGACCAGACCGCTGTTGGGATG
AAAAGAAGTGTGGCCATATAATCTCAAATCTCAAAACACCAACTGCGTGTTGCCAGGCCG
GAGCACGCCATTGTTGCACAACCTGTGCTCAAGTCTGAAGCAGGTTAACTGGGATTTATT
ATTATTTGTTTCACAGACGTGGTGTTGTAAATTAAAATCGCTGGTCGTTTGTGACCCTTG
AAATGGTCGGTATTCATAAACGTGTGTGACCGTTCTCTTTTTGTAAAATTCGTGTTTTAT
TT