Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0470000-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:15916082:15919906:-1 gene:Os02g0470000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0470000-01)
Sequence	ATGGCCATCACCTCCTCCTCCTCCTCGCCGCCCGCCGCCCACCACCCCTTCTCTTTCCCT CGCCGCGCCAAGCAACACGGGCGCCCCCGCCTCGCCGCCGCCTCCTCCAGGTGGGCGAAC CGCAGGGCCAGCTCCTCCATATGGGTCAACCCGGCCGCGCCGCCCCGCCCTGGCCAGACG CTGCGCCGCCTCGTCCAGCTCGGGGACCTCGACGCCGCGCTCCGCCTCCTCCTCCTCCCC GGCGCGCTGCCCGCCCCCGCCGCCGCCCTCATCTCCTGCAACATACTCATCAAGAAGCTC TGCGCCACCCGCCGCCTCGCCGACGCGGAGCGCGTGCTCGACGCGCTCAAGGCGGCCGCC GCCGCGGACGCCGTCTCGCACAACACCCTCGTCGCGGGCTACTGCCGCGACGGCCGCCTC GCCGACGCGGAGCGCGTGCTCGGCGCGGCCAGGGCGACCGGCGCGGCCAACGTCGTCACC TACACCGCGCTCATCGACGGGTACTGCCGCTCCGGCCGCCTCGACGACGCGCTCCGCCTC ATCGCCTCCATGCCCGTGGCGCCCGACACCTACACCTACAACACCGTGCTCAAGGGCTTG TGCATCGCCAAGAAGTGGGAGGAGGCCGAGGAGCTCATGGCAGAGATGATCAGGAACCGT TGCCCTCCCAACGAGGTGACATTCGCCACGCAGATCCGTTCTTTCTGCCAGAACGGGTTG CTCGACCGCGCCGTCCAACTGCTCGACCAAATGCCTAGGTACGGATGCACTCCTGACGTT GTCATTTACAGCACCCTTATCAATGGATTCTCAGAGCAAGGGCATGTCGACCAAGCCCTC GACCTTCTCAACACTATGCTATGCAAGCCCAACACCGTTTGCTACAATGCTGCGTTGAAG GGTTTATGCATCGCCGAGCGATGGGAGGATATCGGTGAGCTGATGGCTGAGATGGTTAGG AAGGGTTGCTCGCCAAACGAAGCTACATTCAGCATGCTGATCAGTTCCTTGTGCCAAAAT AATTTAGTGGACAGCGCAGTCGAAGTTCTTGAGCAAATGGAGAAGTACGGGTGTGAGCCT GACACCGTCAATTACAATATAATCATCAATTCCTTGTCTGAACGAGGGCGCGTGGATGAT GCCCTCAGGTTGCTGAACAGCATGGTGTGTAAGCCTGATGCCCTTGGTTTTAATGCTGTG TTGAAGGGCTTTTGTAGAGCTGAACGATGGCATGATGCTAGTGAGCTTATTGCTCAGATG TTTAGGGATGATTGCCCTCTAATTGAAATGACCTTTAATATACTGATTGACATGCTTTGC CAAAATGGTCTGGTCAACTATGCAACCCAAGTGTTTGAGCAAATGCCAAGGTACAGATGT ACGCCTGACATTGTCACATACAGCAGTCTTCTTAATGGCTTTTCTGAACAAGGTCTTGTA GAGGTTGCCATTCAGTTATTTAGAAGCATGCCGTGCAAGCCTGATATCTTTAGCTACAAT GCTGTGTTGAAGGGTTTGTGCAGAGCTGCACGATGGGAAGATGCTGGGGAGCTTATAGCT GAGATGGTTGGAAAGGATTGTCCCCCAAATGAAGTAACGTTCAATATATTAATCAATTCC TTGTGCCAAAAAGGGCTGGTTGATCGTGCAATTGAGGTTCTTGAGCAAATGCCAAACTAT GGAAGTACACCTGATATTTTTACATATAACGCCCTTATCAATGGCTTTTCTGAACAAGGC CGTTTGGACGATGCCCTCAAGTTATTGAGCACCATGTCATGTAAGCCTGATGCTATTTCT TATAACTCTACATTGAAGGGTTTGTGTAGAGCTGAGCGGTGGCAGGATGCAGAGGAGCTT GTAGCTGAGATGCTTAGGAATAAGTGCACTCCAAATGAAGTAACATTCAAGTATGCTAAT CATTTACTTATGCCTAACAGGGCTGGTTGA

Peptide Sequence

PEP ID	Os02t0470000-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:15916082:15919906:-1 gene:Os02g0470000 transcript:Os02t0470000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0470000-01)
Sequence	MAITSSSSSPPAAHHPFSFPRRAKQHGRPRLAAASSRWANRRASSSIWVNPAAPPRPGQT LRRLVQLGDLDAALRLLLLPGALPAPAAALISCNILIKKLCATRRLADAERVLDALKAAA AADAVSHNTLVAGYCRDGRLADAERVLGAARATGAANVVTYTALIDGYCRSGRLDDALRL IASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGL LDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCKPNTVCYNAALK GLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEP DTVNYNIIINSLSERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQM FRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLV EVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINS LCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMSCKPDAIS YNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTFKYANHLLMPNRAG

Transcript Sequence

Transcript ID	Os02t0470000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:15916082:15919906:-1 gene:Os02g0470000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0470000-01)
Sequence	TCTCACTCCCGCGGCCCCGCCGCACCACCTCATCCATCCCACGAATCCTATCGCCTCCGC CTTCTCCATCCTTCACCACCCCGACGACCATGGCCATCACCTCCTCCTCCTCCTCGCCGC CCGCCGCCCACCACCCCTTCTCTTTCCCTCGCCGCGCCAAGCAACACGGGCGCCCCCGCC TCGCCGCCGCCTCCTCCAGGTGGGCGAACCGCAGGGCCAGCTCCTCCATATGGGTCAACC CGGCCGCGCCGCCCCGCCCTGGCCAGACGCTGCGCCGCCTCGTCCAGCTCGGGGACCTCG ACGCCGCGCTCCGCCTCCTCCTCCTCCCCGGCGCGCTGCCCGCCCCCGCCGCCGCCCTCA TCTCCTGCAACATACTCATCAAGAAGCTCTGCGCCACCCGCCGCCTCGCCGACGCGGAGC GCGTGCTCGACGCGCTCAAGGCGGCCGCCGCCGCGGACGCCGTCTCGCACAACACCCTCG TCGCGGGCTACTGCCGCGACGGCCGCCTCGCCGACGCGGAGCGCGTGCTCGGCGCGGCCA GGGCGACCGGCGCGGCCAACGTCGTCACCTACACCGCGCTCATCGACGGGTACTGCCGCT CCGGCCGCCTCGACGACGCGCTCCGCCTCATCGCCTCCATGCCCGTGGCGCCCGACACCT ACACCTACAACACCGTGCTCAAGGGCTTGTGCATCGCCAAGAAGTGGGAGGAGGCCGAGG AGCTCATGGCAGAGATGATCAGGAACCGTTGCCCTCCCAACGAGGTGACATTCGCCACGC AGATCCGTTCTTTCTGCCAGAACGGGTTGCTCGACCGCGCCGTCCAACTGCTCGACCAAA TGCCTAGGTACGGATGCACTCCTGACGTTGTCATTTACAGCACCCTTATCAATGGATTCT CAGAGCAAGGGCATGTCGACCAAGCCCTCGACCTTCTCAACACTATGCTATGCAAGCCCA ACACCGTTTGCTACAATGCTGCGTTGAAGGGTTTATGCATCGCCGAGCGATGGGAGGATA TCGGTGAGCTGATGGCTGAGATGGTTAGGAAGGGTTGCTCGCCAAACGAAGCTACATTCA GCATGCTGATCAGTTCCTTGTGCCAAAATAATTTAGTGGACAGCGCAGTCGAAGTTCTTG AGCAAATGGAGAAGTACGGGTGTGAGCCTGACACCGTCAATTACAATATAATCATCAATT CCTTGTCTGAACGAGGGCGCGTGGATGATGCCCTCAGGTTGCTGAACAGCATGGTGTGTA AGCCTGATGCCCTTGGTTTTAATGCTGTGTTGAAGGGCTTTTGTAGAGCTGAACGATGGC ATGATGCTAGTGAGCTTATTGCTCAGATGTTTAGGGATGATTGCCCTCTAATTGAAATGA CCTTTAATATACTGATTGACATGCTTTGCCAAAATGGTCTGGTCAACTATGCAACCCAAG TGTTTGAGCAAATGCCAAGGTACAGATGTACGCCTGACATTGTCACATACAGCAGTCTTC TTAATGGCTTTTCTGAACAAGGTCTTGTAGAGGTTGCCATTCAGTTATTTAGAAGCATGC CGTGCAAGCCTGATATCTTTAGCTACAATGCTGTGTTGAAGGGTTTGTGCAGAGCTGCAC GATGGGAAGATGCTGGGGAGCTTATAGCTGAGATGGTTGGAAAGGATTGTCCCCCAAATG AAGTAACGTTCAATATATTAATCAATTCCTTGTGCCAAAAAGGGCTGGTTGATCGTGCAA TTGAGGTTCTTGAGCAAATGCCAAACTATGGAAGTACACCTGATATTTTTACATATAACG CCCTTATCAATGGCTTTTCTGAACAAGGCCGTTTGGACGATGCCCTCAAGTTATTGAGCA CCATGTCATGTAAGCCTGATGCTATTTCTTATAACTCTACATTGAAGGGTTTGTGTAGAG CTGAGCGGTGGCAGGATGCAGAGGAGCTTGTAGCTGAGATGCTTAGGAATAAGTGCACTC CAAATGAAGTAACATTCAAGTATGCTAATCATTTACTTATGCCTAACAGGGCTGGTTGAC TGTAAAATGTATGTAACACTTCTTCCACGTGGAGTGGTACACTGGTCTCACCAATGACAT TTTCCTATGGTTGTGGACTATTTCCTGAAGTCTGAAGCAGCACAGCTGTACAGTACTGAC AGATTCTGCTATTACGCCGCATTGAAGGCTTTGTTTAAAAATAAGCAAGAGGAATTTGAG AGCTTATAATTTTGATAAGGGATGAAAGGGGTGATTGAAAACGGTTTCCTGAAGGATGAT AATGACTGCAAATGATTTTCGGAGGAATCATGTTGAGGAATTGTTTTGGTCAAAACAAGT TAAATTTTTGTTCTTCTCAGGATTCCTAGAGAGCAGTATGAAAGCAAAGATCTTGTCCAG CATTTTGTATATCATTCAAGGAATATTCTAATTTCGGGAAAAACAGTTCCATTTCAGTAC TTTGTTGTTAAATTATTTGGCTAATATTTCTAGTACCACGCCATATATTGTCTTGGTACA GTGCATAGTTCAGCCGTAGGACAAAGACCAAGCATATTTTAGCCCATTTTGGGCTGAGAC ACATGCCATACTTGCAGTTCCTTGGTTTGTTGCTTGACAAGAATACCTTAATATGAGTGC AACATGCAAGATCTTAGGTTTTGTCAATCTGTCAGAACTTCAAATGTTCAAGTCTTCAAT GAATGTTATCAACTTCTCATTACAAGTTTGGAGAAAAATCCAGAGATTTTTTGTGTATGA ACTTGTCATGGTCATGGGTATGACAATGGAGCACTCAGTATCAATCTCAACTTTCACTTG GTAGCAGTTCATTAACCAGCCGGTAGTAAGATCAAGGTGTGCCAACGACCTCATCAGTTA ATGAGAAACAATAAGAGCCTGTTCGGTTAATCCTGATGTGGCCTTCAAATTCCCCCGATC CACATCAAGAAACTCGAACCCTGGTAAATAAACTTAATTTTGTAACAGCTGGCTTCTAGA AATCATATATACACAGAATAATGTCTACTTAATTTTTAGCCATATGCAACCTAATGTAAG TTTATACAGCCAAGAAATATGATCAAGTCTAAAAGGAATTCGACAGGC