Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0468500-00
CDS Infomation	cds chromosome:IRGSP-1.0:2:15788412:15790443:1 gene:Os02g0468500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0468500-00)
Sequence	ATGAAACCCTCACCCGCTTCCACCAAAGCCCCGCTCCCGTGGATCTCCCCGCTCCACTAC CGAAGCCCCACACGCGCCGCGCCGCCCTCCCCGCCGCCGCCGCCGCCTCCGCTGCCCGAA GCGCCCCTCACGCAGCTGCGGTACGTCCACCACCCCGACCTAGCCCGCCTCATCGCCTCC TCCCCCTCCGCGCAGCGCGCGCTCGACCTCTTCAACGCCGCCGCCGCGCAGCGCGGCTTC TCGCACACCCCGGCCACCTTCGCCGCGCTCCTCGTCCGCCTCGCCCGCTCTCGCCTCCCC TCCGCCGCCGCCGCCGTCCTCCGCCGCGCCGCCTCCGCGCCCTGCCGCTTCCTCGAGCCG CAGTTCCTCCCGCTCCTCCGCCTCCTCCCGCCCGACCACTCCCTCGCGCTCCTCCGCCTC CTCCCCGCGCTCCTCCGCCGGGGCCGCGTCTCCCGCAAGGCCCTCGCCGTCTGCCTCGAC CGCCTCGTCTCCTCCCGCCGCTGCCCCGATGTTCTCACCGAGCTCCTGGCCGACCTGCGC GACCCCCGGAGCAAGTACCTTCCGCAGCCCAACACGTGCATCTACAACATCCTCATCAAG CATTACGTCAAGAAAGGCGATTTGGGGACAGCCTTCCAGGTGTTTGATGAAATGCGTAAG ATGAACTGCGCTGATGTTAGACCAAGCTTAGTCACCTATTCAACATTGATAGGTGGGCTC TGTCGTGGGGCTCAGATGAAGGAAGCGTTTGAACTATTTGAGGACATGATCGAGAAGGAC CGCATTGTGCCAGACCAGCTAACATACAATTTGCTCATCGGTGGATTCTGCAGGCTAGGA CAGGTGGAGAAAGCACAATCGATCTTTGGATTTATGAGGAAGAATGAGTGCGAGCCAAAT GCCTTCAACTATGCCACTTTGATCAATGGGCACTGTAAGAAAGGGGAAGTGGAGGCAGCG AGGGGGGTATTTGAGGAGATGATTAGATCTGGGGTTCAGCCGGATGCTGTCAGCTATACC TCACTTGTTGGATGCCTTTGTCGGCATGGGAATGTGGATGAGGGGATCAATCTTGTGCAG GAGATGTGGCAGAAAGGGTGTAAGGCTGATGTTGTCACATACAATCTGCTGCTTGAGGGG TTGTGCAAAGATAGACGGATAGCGGAAGCAGTGACCTTGCTTGAGAAGTTACCGTCCGAA GGAGTACAGCTGAATGTCGCAAGCTACCGGATTGTGATGAATTGCCTGTGCTCATGTGGA GAGATGGAGAAAGCGGCTGGCTTGCTGGGCATGATGCTCGGACGAGGATTTGTACCTCAC TATGCAGCATCAAACATGCTGTTGATTGGTCTGTGTGATGTTGGGAGGGTATCAGATGCA ACAGTCACATTGTATGGACTGGTGGACACTGGGTTCATGCCAGAGGCTAGATGCTGGGCA AGGCTGATTGAGTCTGTGTTCCGGGAGAGAAAGCTTAGGAGATCTATTGAGCTGTTGGAT GTGCTGATTGCTGAAGGGTGA

Peptide Sequence

PEP ID	Os02t0468500-00
PEP Infomation	pep chromosome:IRGSP-1.0:2:15788412:15790443:1 gene:Os02g0468500 transcript:Os02t0468500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0468500-00)
Sequence	MKPSPASTKAPLPWISPLHYRSPTRAAPPSPPPPPPPLPEAPLTQLRYVHHPDLARLIAS SPSAQRALDLFNAAAAQRGFSHTPATFAALLVRLARSRLPSAAAAVLRRAASAPCRFLEP QFLPLLRLLPPDHSLALLRLLPALLRRGRVSRKALAVCLDRLVSSRRCPDVLTELLADLR DPRSKYLPQPNTCIYNILIKHYVKKGDLGTAFQVFDEMRKMNCADVRPSLVTYSTLIGGL CRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPN AFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQ EMWQKGCKADVVTYNLLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCG EMEKAAGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYGLVDTGFMPEARCWA RLIESVFRERKLRRSIELLDVLIAEG

Transcript Sequence

Transcript ID	Os02t0468500-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:15788412:15790443:1 gene:Os02g0468500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0468500-00)
Sequence	GGCGTCCTGCCGCCCGCCGCCCTAGCCTGTTTCCTCCCCAGCATCCGCCGCCGCAGGGGA GCATGAAACCCTCACCCGCTTCCACCAAAGCCCCGCTCCCGTGGATCTCCCCGCTCCACT ACCGAAGCCCCACACGCGCCGCGCCGCCCTCCCCGCCGCCGCCGCCGCCTCCGCTGCCCG AAGCGCCCCTCACGCAGCTGCGGTACGTCCACCACCCCGACCTAGCCCGCCTCATCGCCT CCTCCCCCTCCGCGCAGCGCGCGCTCGACCTCTTCAACGCCGCCGCCGCGCAGCGCGGCT TCTCGCACACCCCGGCCACCTTCGCCGCGCTCCTCGTCCGCCTCGCCCGCTCTCGCCTCC CCTCCGCCGCCGCCGCCGTCCTCCGCCGCGCCGCCTCCGCGCCCTGCCGCTTCCTCGAGC CGCAGTTCCTCCCGCTCCTCCGCCTCCTCCCGCCCGACCACTCCCTCGCGCTCCTCCGCC TCCTCCCCGCGCTCCTCCGCCGGGGCCGCGTCTCCCGCAAGGCCCTCGCCGTCTGCCTCG ACCGCCTCGTCTCCTCCCGCCGCTGCCCCGATGTTCTCACCGAGCTCCTGGCCGACCTGC GCGACCCCCGGAGCAAGTACCTTCCGCAGCCCAACACGTGCATCTACAACATCCTCATCA AGCATTACGTCAAGAAAGGCGATTTGGGGACAGCCTTCCAGGTGTTTGATGAAATGCGTA AGATGAACTGCGCTGATGTTAGACCAAGCTTAGTCACCTATTCAACATTGATAGGTGGGC TCTGTCGTGGGGCTCAGATGAAGGAAGCGTTTGAACTATTTGAGGACATGATCGAGAAGG ACCGCATTGTGCCAGACCAGCTAACATACAATTTGCTCATCGGTGGATTCTGCAGGCTAG GACAGGTGGAGAAAGCACAATCGATCTTTGGATTTATGAGGAAGAATGAGTGCGAGCCAA ATGCCTTCAACTATGCCACTTTGATCAATGGGCACTGTAAGAAAGGGGAAGTGGAGGCAG CGAGGGGGGTATTTGAGGAGATGATTAGATCTGGGGTTCAGCCGGATGCTGTCAGCTATA CCTCACTTGTTGGATGCCTTTGTCGGCATGGGAATGTGGATGAGGGGATCAATCTTGTGC AGGAGATGTGGCAGAAAGGGTGTAAGGCTGATGTTGTCACATACAATCTGCTGCTTGAGG GGTTGTGCAAAGATAGACGGATAGCGGAAGCAGTGACCTTGCTTGAGAAGTTACCGTCCG AAGGAGTACAGCTGAATGTCGCAAGCTACCGGATTGTGATGAATTGCCTGTGCTCATGTG GAGAGATGGAGAAAGCGGCTGGCTTGCTGGGCATGATGCTCGGACGAGGATTTGTACCTC ACTATGCAGCATCAAACATGCTGTTGATTGGTCTGTGTGATGTTGGGAGGGTATCAGATG CAACAGTCACATTGTATGGACTGGTGGACACTGGGTTCATGCCAGAGGCTAGATGCTGGG CAAGGCTGATTGAGTCTGTGTTCCGGGAGAGAAAGCTTAGGAGATCTATTGAGCTGTTGG ATGTGCTGATTGCTGAAGGGTGACCAAGTCAACTTGCTCCAGCATGGATTGTTTTGAGTT TTTGACTGATTTCATCACCTGAAGGGAGGTGAAAAACCAGGTATTGAGATGTTCCAATAA GGAGTGATGACCTACTGAAGCCACATAGGTTTGATAGACATGGGCTGATGACTGTGCAGG AGATGACTGAAGGGATGAGTGATTTGCAGCAGGACTGTGTGTGCAATCAATCTTCACTAA GGTTAGCAAGCACCAAGCAATGACCAGCCTGACCCAATTCATGATGGAATCTGCGATCAT TCCGAGGTTGGGGAATCTTCGGAAGGTGCCATGACACATGGTTACTTTGATGTTTCATGA TTATGCCAAAAATAGTACTCTGTACATGATTAATAACTGACAAAGGAAGCTGAAGTCTGA ACGACCATTTTGTGGACAGGTGTTCATTTTCCTTATTTGCTGGTGTGTTCTT