Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0456000-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:15141481:15143539:-1 gene:Os02g0456000 gene_biotype:protein_coding transcript_biotype:protein_coding description:COG4 transport domain containing protein. (Os02t0456000-01)
Sequence

ATGGCTGTGGCGTCCTACCCCTTGCCCATCCCGCGCTCCCCACGCCCCGATGCCGCGCTG
CCCCCCGACGCCTCCACCGACACCGCCCCGTCCCTCGACTTCGGCGACCCGGCCTCCGTC
GTCGCCCTCCGCGCCCTCACCGACGCCGGCGCCGCCACCCGCCTCCTCCACGAGTGCGTC
GCCTACCAGCGCGCCCTCGACGCCCGCCTCGACGCGCTCCTCGCCCGCCGCCCCGACCTC
GACCGCGCCGCCGCCTCCCTTCTCCGCTCCGCCCCGCCGCTCCTCTCGCTCGCCGCCTCC
GACGCCGCCGCGCTCAGGGACTCCTCCTCCTCCACCGCCGCGCTGGCCGAGGCGCTCTCC
TCCCGCGTGCGCCACCTCGACGCCGCGCACTCCAGGGCGGAGGCCGCCCTCGCGCGCGCC
GAGGCGGCGCTCGATAGGTCCCGCGCGCTCGACGCCGCACGCCGTGCTCTGGCGGCGGAT
GATCTCACGGCCGCTGCCACCGCCGCGCACGACTTCCTCGCCATCGACGCCCGGTTCCCC
ACCGATGACGACCTCCGCCGCGACCTTCTGGACATCAAGCGCAGGCTGGAGGGGCTCGCG
CGCCGAAGGCTGGCGGATGCTGTGGACGCGCTGAACCATCCCGCCGTTCTCCGCCTCGTC
CGCCTCTTCCCTCTCCTCGCTCTCGCTGATGAGGGATTGCAGGTCTATGTCGCCTACCTC
AAGAAGGTCGTCGCCCTGCGCGCTCGTGCCGACTTCGAGCACCTAGCTGAGTTAACCTCT
GCAACACAGCCTACTTCAGAGCGGCCTGATTTTGTTGGCTGCCTTACCCGTCTCTTCAAG
GACATTGTCCTGGCCGTTGAGGAGAATGATGCTGTGCTTCGTGAACTCAGAGGTGAGGAT
GGTGTTGCCTATGCCATCATTGAGCTGCAGGAGGAGTGTGATTCCCGGGGCACACAGATA
CTGCGCCGATATGCTGATTACAGGAAACTTGCACGTCTTGCCTCGGATATAAACTCATAT
ACCAAGAACCTCCTCTCTGTGGTGAGTTCTGTGGCCAATGCTGCAGGGGGCAATGAAGGG
CCTGACCCCAGGGAGGTCGAGCTCTATCTTGAGGAGATTCTGTCACTGACACAGCTTGGT
GAAGACTATACTGAATTTATGGTGAATAAGATTCGTGGATTGCGAGATGTCAAACCTGAG
CTGGGACCACAAGCGATGAAGTCCTTCCGGAATGGTAGCTTCAATAAAATGGTGCAGGAT
TTAACTGGGTTTTATGTGATCCTGGAAGAATTCTTCATGGTTGAGAATGTAAGGAAAGCC
ATCCGGATTGATGAACCAGTGCCTGATGGTCTCACAACATCAATGGTGGATGATGTGTTC
TTCGTACTGCAGAGTTGCTGCCGAAGAGCAGCATCCACTGCAAGTATAAACTCAATTTTT
GCAGTGCTTGGTGGGGCGGCGAGCCTACTGAGCAATGAGTACCAGGAAGCACTGCAATGG
AGGATGAGGGAACCAAACTTGGGTGCAAAGCTCTTTCTTGGTGGTGTTGGTGTTCAGAAG
ACTGGTGAGGAGATTGCAACTGCGCTGAACAACATGGATGTTAGCTCAGAGTATGTCCTG
AAGCTCCGTCATGAGATTGAGGAGCTCTGTTCAGAGGTCAGTGTTAACCTTTTCTTCTCT
TCATAA

Peptide Sequence

PEP ID

Os02t0456000-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:15141481:15143539:-1 gene:Os02g0456000 transcript:Os02t0456000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:COG4 transport domain containing protein. (Os02t0456000-01)
Sequence

MAVASYPLPIPRSPRPDAALPPDASTDTAPSLDFGDPASVVALRALTDAGAATRLLHECV
AYQRALDARLDALLARRPDLDRAAASLLRSAPPLLSLAASDAAALRDSSSSTAALAEALS
SRVRHLDAAHSRAEAALARAEAALDRSRALDAARRALAADDLTAAATAAHDFLAIDARFP
TDDDLRRDLLDIKRRLEGLARRRLADAVDALNHPAVLRLVRLFPLLALADEGLQVYVAYL
KKVVALRARADFEHLAELTSATQPTSERPDFVGCLTRLFKDIVLAVEENDAVLRELRGED
GVAYAIIELQEECDSRGTQILRRYADYRKLARLASDINSYTKNLLSVVSSVANAAGGNEG
PDPREVELYLEEILSLTQLGEDYTEFMVNKIRGLRDVKPELGPQAMKSFRNGSFNKMVQD
LTGFYVILEEFFMVENVRKAIRIDEPVPDGLTTSMVDDVFFVLQSCCRRAASTASINSIF
AVLGGAASLLSNEYQEALQWRMREPNLGAKLFLGGVGVQKTGEEIATALNNMDVSSEYVL
KLRHEIEELCSEVSVNLFFSS

Transcript Sequence

Transcript ID

Os02t0456000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:15141481:15143539:-1 gene:Os02g0456000 gene_biotype:protein_coding transcript_biotype:protein_coding description:COG4 transport domain containing protein. (Os02t0456000-01)
Sequence

GATCCCGCGAATTACCCACCGAGATCTCGGCGATCCCCGGCGCCGCGGCTGGCCGGCATG
GCTGTGGCGTCCTACCCCTTGCCCATCCCGCGCTCCCCACGCCCCGATGCCGCGCTGCCC
CCCGACGCCTCCACCGACACCGCCCCGTCCCTCGACTTCGGCGACCCGGCCTCCGTCGTC
GCCCTCCGCGCCCTCACCGACGCCGGCGCCGCCACCCGCCTCCTCCACGAGTGCGTCGCC
TACCAGCGCGCCCTCGACGCCCGCCTCGACGCGCTCCTCGCCCGCCGCCCCGACCTCGAC
CGCGCCGCCGCCTCCCTTCTCCGCTCCGCCCCGCCGCTCCTCTCGCTCGCCGCCTCCGAC
GCCGCCGCGCTCAGGGACTCCTCCTCCTCCACCGCCGCGCTGGCCGAGGCGCTCTCCTCC
CGCGTGCGCCACCTCGACGCCGCGCACTCCAGGGCGGAGGCCGCCCTCGCGCGCGCCGAG
GCGGCGCTCGATAGGTCCCGCGCGCTCGACGCCGCACGCCGTGCTCTGGCGGCGGATGAT
CTCACGGCCGCTGCCACCGCCGCGCACGACTTCCTCGCCATCGACGCCCGGTTCCCCACC
GATGACGACCTCCGCCGCGACCTTCTGGACATCAAGCGCAGGCTGGAGGGGCTCGCGCGC
CGAAGGCTGGCGGATGCTGTGGACGCGCTGAACCATCCCGCCGTTCTCCGCCTCGTCCGC
CTCTTCCCTCTCCTCGCTCTCGCTGATGAGGGATTGCAGGTCTATGTCGCCTACCTCAAG
AAGGTCGTCGCCCTGCGCGCTCGTGCCGACTTCGAGCACCTAGCTGAGTTAACCTCTGCA
ACACAGCCTACTTCAGAGCGGCCTGATTTTGTTGGCTGCCTTACCCGTCTCTTCAAGGAC
ATTGTCCTGGCCGTTGAGGAGAATGATGCTGTGCTTCGTGAACTCAGAGGTGAGGATGGT
GTTGCCTATGCCATCATTGAGCTGCAGGAGGAGTGTGATTCCCGGGGCACACAGATACTG
CGCCGATATGCTGATTACAGGAAACTTGCACGTCTTGCCTCGGATATAAACTCATATACC
AAGAACCTCCTCTCTGTGGTGAGTTCTGTGGCCAATGCTGCAGGGGGCAATGAAGGGCCT
GACCCCAGGGAGGTCGAGCTCTATCTTGAGGAGATTCTGTCACTGACACAGCTTGGTGAA
GACTATACTGAATTTATGGTGAATAAGATTCGTGGATTGCGAGATGTCAAACCTGAGCTG
GGACCACAAGCGATGAAGTCCTTCCGGAATGGTAGCTTCAATAAAATGGTGCAGGATTTA
ACTGGGTTTTATGTGATCCTGGAAGAATTCTTCATGGTTGAGAATGTAAGGAAAGCCATC
CGGATTGATGAACCAGTGCCTGATGGTCTCACAACATCAATGGTGGATGATGTGTTCTTC
GTACTGCAGAGTTGCTGCCGAAGAGCAGCATCCACTGCAAGTATAAACTCAATTTTTGCA
GTGCTTGGTGGGGCGGCGAGCCTACTGAGCAATGAGTACCAGGAAGCACTGCAATGGAGG
ATGAGGGAACCAAACTTGGGTGCAAAGCTCTTTCTTGGTGGTGTTGGTGTTCAGAAGACT
GGTGAGGAGATTGCAACTGCGCTGAACAACATGGATGTTAGCTCAGAGTATGTCCTGAAG
CTCCGTCATGAGATTGAGGAGCTCTGTTCAGAGGTCAGTGTTAACCTTTTCTTCTCTTCA
TAACTTGCATTCATTTGGGATTTAAGATATCATGATTAATCAAGTAGTCTCTCAGTTATT
ACAATTTAAGATATCGGTGCTTTTGTCCAGTTCTTGTAATTTGTTTAGTGAAAGAAGCCT
CTAGAAAGTAGTTGATAATATCATGTTGTCACACCTTATGAGTGGCACCAAAACAGCATC
ACATATGTAAAAGGGTTATATGTGTCTTCCTTGAATAAATAGTCTCTTAGTTAGGATATA
TTTAGCTATGCTGTAACCTGTAGATAAATCTTTAGGAACTTCCTACAATTATGGTGCAAT
TTGTTTTCAATAACGGTCC