Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0448400-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:14529681:14537401:-1 gene:Os02g0448400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Synaptotagmin C. (Os02t0448400-01)
Sequence

ATGGGGTTTTTCCGCACTGTGCTGGGTTTCTTCGGGTTTGGGGTGGGAGTTACCATGGGG
CTTGTGATTGGGTACTACCTCTTCATCTACTTCCAGCCCACCGACGTCAAGGACCCTGTA
ATCAGGCCACTTGTTGAACTTGATACAAAATCTCTAGAAAGCATGCTTCCTGAGGTTCCT
CATTGGGTGAAGAATCCAGACTTTGACCGGATTGATTGGCTTAACAAGTTTGTCGAAAAC
ATTTGGCCTTATCTTGACAAGGCAATATGTAAAACTGCAAAGGAAATCGCTAAGCCAATT
ATTGCTGAGAACACTGCCAAGTATAAGATTGATTCGGTTGAATTTGAGACATTAACATTA
GGTTCATTACCACCAACATTTCAAGGGATGAAGGTCTACACCACAGATGAGCAAGAACTT
ATAATGGAACCTTCCATCAAGTGGGCTGGAAATCCGAATATCACTGTTGTTGTCAAAGCA
TTTGGGCTAAAAGCAACTGCACAGGTTATTGATTTGCATGTTTTTGCTCTACCACGCATA
ACGTTGAAGCCCTTGGTGCCTAGCTTTCCTTGTTTTGCTAAAATAGTTGTTTCACTTATG
GAGAAGCCACATGTTGATTTTGGTCTGAAACTCTTAGGAGCAGATCTCATGGCAATTCCA
GGTCTCTATGTATTTGTTCAGGAGATTATCAAGACTCAGGTAGCAAACATGTACTTGTGG
CCAAAAGTACTTGAGGTGCCAATCATGGATCCAGCAAAAGCACAAAAGAAGCCTGTTGGA
ATTTTGCATGTTAACATCGTACGGGCTGTCAAACTCACCAAAAAGGATTTTCTGGGAAAA
TCGGATCCATATGTGAAGTTAAAGCTAACAGAGGAAAAACTCCCATCAAAGAAAACGTCA
GTGAAGCGAAGCAACTTGAACCCTGAATGGAATGAAGATTTCAAATTAGTTGTCAAAGAC
CCAGAATCTCAGGCTCTTGAGCTTACTGTTTACGATTGGGAGCAGGTTGGGAAGCACGAC
AAGATTGGAATGAGTGTTATCCCATTGAAAGAGCTTATTCCTGATGAGGCAAAGTCACTT
ACACTTGACTTACACAAGACTATGGATGCTAATGACCCAGCAAATGACAAGTTCCGGGGG
CAGCTCACTGTTGATGTAACATATAAGCCTTTCAAGGAAGGTGATTCTGATGTTGATACA
AGTGATGAATCTGGCACCATTGAAAAAGCCCCTGATGGCACACCGGAAGGTGGTGGTTTG
CTGGTAGTTATCGTTCATGAAGCACAAGACGTTGAAGGAAAGCACCACACTAATCCATAT
GTAAGAATTGTGTTTAGAGGTGAAGAAAGGAAGACCAAGCATATTAAGAAGAATCGTGAT
CCACGTTGGGAGCAAGAATTTCAGTTTGTCTGCGAGGAACCACCCATAAATGATAAAATG
CAAATTGAAGTCATTAGCAGACCACCAAGCATCGGTATACATTCCAAGGAAAATCTTGGC
TATGTTGTCATAAGTCTTGCAGATGTTATAAACAATAAGAGGATCAATGAGAAATATCAT
CTAATTGACTCGAAAAATGGCCGCATCCAGTTGGAATTGCAGTGGAGAACATCTTAG

Peptide Sequence

PEP ID

Os02t0448400-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:14529681:14537401:-1 gene:Os02g0448400 transcript:Os02t0448400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Synaptotagmin C. (Os02t0448400-01)
Sequence

MGFFRTVLGFFGFGVGVTMGLVIGYYLFIYFQPTDVKDPVIRPLVELDTKSLESMLPEVP
HWVKNPDFDRIDWLNKFVENIWPYLDKAICKTAKEIAKPIIAENTAKYKIDSVEFETLTL
GSLPPTFQGMKVYTTDEQELIMEPSIKWAGNPNITVVVKAFGLKATAQVIDLHVFALPRI
TLKPLVPSFPCFAKIVVSLMEKPHVDFGLKLLGADLMAIPGLYVFVQEIIKTQVANMYLW
PKVLEVPIMDPAKAQKKPVGILHVNIVRAVKLTKKDFLGKSDPYVKLKLTEEKLPSKKTS
VKRSNLNPEWNEDFKLVVKDPESQALELTVYDWEQVGKHDKIGMSVIPLKELIPDEAKSL
TLDLHKTMDANDPANDKFRGQLTVDVTYKPFKEGDSDVDTSDESGTIEKAPDGTPEGGGL
LVVIVHEAQDVEGKHHTNPYVRIVFRGEERKTKHIKKNRDPRWEQEFQFVCEEPPINDKM
QIEVISRPPSIGIHSKENLGYVVISLADVINNKRINEKYHLIDSKNGRIQLELQWRTS

Transcript Sequence

Transcript ID

Os02t0448400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:14529681:14537401:-1 gene:Os02g0448400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Synaptotagmin C. (Os02t0448400-01)
Sequence

ATTGCCCCTGTTGCTTGCTTCACGTCTCCTCTTCATGTGATCTGAGGCGCTCGCTTTCGG
ATTCTTGCTCTTCTCGGCGGCTCGCGTTGGGGGAGCGGTGGTGGGGAGGAGATGGGGTTT
TTCCGCACTGTGCTGGGTTTCTTCGGGTTTGGGGTGGGAGTTACCATGGGGCTTGTGATT
GGGTACTACCTCTTCATCTACTTCCAGCCCACCGACGTCAAGGACCCTGTAATCAGGCCA
CTTGTTGAACTTGATACAAAATCTCTAGAAAGCATGCTTCCTGAGGTTCCTCATTGGGTG
AAGAATCCAGACTTTGACCGGATTGATTGGCTTAACAAGTTTGTCGAAAACATTTGGCCT
TATCTTGACAAGGCAATATGTAAAACTGCAAAGGAAATCGCTAAGCCAATTATTGCTGAG
AACACTGCCAAGTATAAGATTGATTCGGTTGAATTTGAGACATTAACATTAGGTTCATTA
CCACCAACATTTCAAGGGATGAAGGTCTACACCACAGATGAGCAAGAACTTATAATGGAA
CCTTCCATCAAGTGGGCTGGAAATCCGAATATCACTGTTGTTGTCAAAGCATTTGGGCTA
AAAGCAACTGCACAGGTTATTGATTTGCATGTTTTTGCTCTACCACGCATAACGTTGAAG
CCCTTGGTGCCTAGCTTTCCTTGTTTTGCTAAAATAGTTGTTTCACTTATGGAGAAGCCA
CATGTTGATTTTGGTCTGAAACTCTTAGGAGCAGATCTCATGGCAATTCCAGGTCTCTAT
GTATTTGTTCAGGAGATTATCAAGACTCAGGTAGCAAACATGTACTTGTGGCCAAAAGTA
CTTGAGGTGCCAATCATGGATCCAGCAAAAGCACAAAAGAAGCCTGTTGGAATTTTGCAT
GTTAACATCGTACGGGCTGTCAAACTCACCAAAAAGGATTTTCTGGGAAAATCGGATCCA
TATGTGAAGTTAAAGCTAACAGAGGAAAAACTCCCATCAAAGAAAACGTCAGTGAAGCGA
AGCAACTTGAACCCTGAATGGAATGAAGATTTCAAATTAGTTGTCAAAGACCCAGAATCT
CAGGCTCTTGAGCTTACTGTTTACGATTGGGAGCAGGTTGGGAAGCACGACAAGATTGGA
ATGAGTGTTATCCCATTGAAAGAGCTTATTCCTGATGAGGCAAAGTCACTTACACTTGAC
TTACACAAGACTATGGATGCTAATGACCCAGCAAATGACAAGTTCCGGGGGCAGCTCACT
GTTGATGTAACATATAAGCCTTTCAAGGAAGGTGATTCTGATGTTGATACAAGTGATGAA
TCTGGCACCATTGAAAAAGCCCCTGATGGCACACCGGAAGGTGGTGGTTTGCTGGTAGTT
ATCGTTCATGAAGCACAAGACGTTGAAGGAAAGCACCACACTAATCCATATGTAAGAATT
GTGTTTAGAGGTGAAGAAAGGAAGACCAAGCATATTAAGAAGAATCGTGATCCACGTTGG
GAGCAAGAATTTCAGTTTGTCTGCGAGGAACCACCCATAAATGATAAAATGCAAATTGAA
GTCATTAGCAGACCACCAAGCATCGGTATACATTCCAAGGAAAATCTTGGCTATGTTGTC
ATAAGTCTTGCAGATGTTATAAACAATAAGAGGATCAATGAGAAATATCATCTAATTGAC
TCGAAAAATGGCCGCATCCAGTTGGAATTGCAGTGGAGAACATCTTAGAACTCACGGGCT
GAAATCTTGTAAAGTTTCTTGTTTAGAATGCTTTCTACACTTGTATGTATCATTTGGCAG
ACATATCTTACCTTCTGAATTATTCCACTTTTAAAACTATGCTTTTCATTGTTTCCCCCA
GATTCTCACTGGTTGGTATATATGATTATGAACAGAAACCAGGAAGCCTGAACTAATTAT
GGAATTGGTATTCTGTATGAG