Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0437800-02
CDS Infomation	cds chromosome:IRGSP-1.0:2:13977651:13987361:-1 gene:Os02g0437800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to vacuolar protein-sorting protein 45. (Os02t0437800-01);Similar to Vacuolar protein-sorting protein 45 homolog (AtVPS45). (Os02t0437800-02);Similar to vacuolar protein-sorting protein 45. (Os02t0437800-03)
Sequence	ATGACGCTGATCACCCTCATCCGCGACTACATCGATCGCATGCTCCACGACATCCCCGGG ATGAAGGTCCTCGTCCTCGACCCCGATACCGTGGGGATGGTAAGCGTGGTGTACAGCCAG TCAGATCTCCTCCGGAAGGAGGTGTTCCTCGTGGAGACGGTCGACAACGCCTCCAGCTCC AGGGAGTCCATGGCGCACCTCAAGGCCGTCTACTTCCTCCGCCCCTCCTCCGATAACGTC CAGAAGCTCCGCCGGCATCTCGCCGCCCCGCGTTTCGCCGAGTACCACCTCTTCTTCTCC AATGTATTGAAGATTCCACAGATTCAGGTGCTCGCAGATTCCGATGAGCAGGAGGTTGTG CAGCAAGTTCAGGAGTTCTATGCTGATTTTTGTGCCATCGACCCTTACCATTTCACGCTG AACATACGCAATAACCACGTCTACATGCTTCCAATGGTGGTGGATCCTCCTGGTATGCAG AGTTTCTGTGATCGGGCTGTTGATGGCATTGCTTCTGTCTTCCTGGCTCTCAAGCGCCGT CCTGTTATTAGATACCAAAGGACATCTGATGTTGCAAAAAGGATTGCACAAGAAACTGCG AGATTGATGTATGAGCAGGAAAGTGGCTTGTTTGATTTTAGACGAACTGAGAACTCTTCC TTGTTGCTGGTGATTGACAGAAGGGATGATCCTGTTACCCCGTTACTTAACCAATGGACA TATCAGGCAATGGTTCATGAACTTATTGGAATTGAGAACAATAAAGTTGATCTAAGGGAA TATCCTAATGTCCCTAAAGACCAGAAGGAGGTGGTTCTATCATCAGTTCAGGATGAATTT TTTAGGGCTAACATGTTCGAGAATTTTGGTGATCTTGGTATGAATATCAAAAGAATGGTA GATGACTTTCAACATCTTTCGAAGACCAGCCAGAATATTCAGAGCATAAGTGATATGTCA AAATTTCTGAGCAACTACCCTGAATATCGGAAGACTCATGGAAATGTAACGAAGCATGTT GCTTTGGTCAGTGAGATGAGCAGAATTGTGGAGGAAAGGAAGATTATGCTAATTTCCCAG ACGGAGCAAGAGTTAGCATGTACAAGTGGACAAGCAGCTGCTTTCGAGGCTGTCACTTCC TTGCTAAACAATGAAAGTGTGTCTGATATTGATCGTTTACGGTTAGTATTGCTCTATGCT TTGAGGTATGAAAAGGAGAGTCCGGTTCAGTTGATGCAGCTTTTCAATAAATTGGCTTCT CGTTCTGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCAAACAGGCTGGTGTTGAT AAGAGAACAGGTGACTTATATGGGAACCGTGATCTATTAAATATTGCTCGCAACATGGCT CGTGGACTCAAGGGCGTTGAGAATGTATACACCCAACATCAGCCTCTTCTCTTTCAGACC ATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGATTATCCGCTTGTTGGCAATCAT TTCCAGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTTGGAGGGACGACTTACGAG GAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGAGTTCGGTTCTTTCTTGGT GGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTAGGAGAGGCACAGAGAATA TCGAAATCGAGCAGTCTAGTATGA

Peptide Sequence

PEP ID	Os02t0437800-02
PEP Infomation	pep chromosome:IRGSP-1.0:2:13977651:13987361:-1 gene:Os02g0437800 transcript:Os02t0437800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to vacuolar protein-sorting protein 45. (Os02t0437800-01);Similar to Vacuolar protein-sorting protein 45 homolog (AtVPS45). (Os02t0437800-02);Similar to vacuolar protein-sorting protein 45. (Os02t0437800-03)
Sequence	MTLITLIRDYIDRMLHDIPGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDNASSS RESMAHLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVV QQVQEFYADFCAIDPYHFTLNIRNNHVYMLPMVVDPPGMQSFCDRAVDGIASVFLALKRR PVIRYQRTSDVAKRIAQETARLMYEQESGLFDFRRTENSSLLLVIDRRDDPVTPLLNQWT YQAMVHELIGIENNKVDLREYPNVPKDQKEVVLSSVQDEFFRANMFENFGDLGMNIKRMV DDFQHLSKTSQNIQSISDMSKFLSNYPEYRKTHGNVTKHVALVSEMSRIVEERKIMLISQ TEQELACTSGQAAAFEAVTSLLNNESVSDIDRLRLVLLYALRYEKESPVQLMQLFNKLAS RSAKYKSGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLLFQT MEGIVKARLRDADYPLVGNHFQQNRPQDVVLFIVGGTTYEEARSVALYNAANPGVRFFLG GSVVLNSKRFLDDLGEAQRISKSSSLV

Transcript Sequence

Transcript ID	Os02t0437800-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:13977651:13987361:-1 gene:Os02g0437800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to vacuolar protein-sorting protein 45. (Os02t0437800-01);Similar to Vacuolar protein-sorting protein 45 homolog (AtVPS45). (Os02t0437800-02);Similar to vacuolar protein-sorting protein 45. (Os02t0437800-03)
Sequence	GATATGCAATTTTCTCCCTCGCCTGGTATCGCTGCTGCTCTGGTTGTCTCTCGTCCTGAG TCTCCGACTGAGCGCCTCCAATCTCAACAGCCACCTCCCACCTGTTCCGGCTCCGGCTAG ACCTCGCCGCCGGCGATCCCCAGCCTCAGCGCATCCAACCGACGGAAGAACACAAGGCGC CGCACCGCACCGCAGCGATGACGCTGATCACCCTCATCCGCGACTACATCGATCGCATGC TCCACGACATCCCCGGGATGAAGGTCCTCGTCCTCGACCCCGATACCGTGGGGATGGTAA GCGTGGTGTACAGCCAGTCAGATCTCCTCCGGAAGGAGGTGTTCCTCGTGGAGACGGTCG ACAACGCCTCCAGCTCCAGGGAGTCCATGGCGCACCTCAAGGCCGTCTACTTCCTCCGCC CCTCCTCCGATAACGTCCAGAAGCTCCGCCGGCATCTCGCCGCCCCGCGTTTCGCCGAGT ACCACCTCTTCTTCTCCAATGTATTGAAGATTCCACAGATTCAGGTGCTCGCAGATTCCG ATGAGCAGGAGGTTGTGCAGCAAGTTCAGGAGTTCTATGCTGATTTTTGTGCCATCGACC CTTACCATTTCACGCTGAACATACGCAATAACCACGTCTACATGCTTCCAATGGTGGTGG ATCCTCCTGGTATGCAGAGTTTCTGTGATCGGGCTGTTGATGGCATTGCTTCTGTCTTCC TGGCTCTCAAGCGCCGTCCTGTTATTAGATACCAAAGGACATCTGATGTTGCAAAAAGGA TTGCACAAGAAACTGCGAGATTGATGTATGAGCAGGAAAGTGGCTTGTTTGATTTTAGAC GAACTGAGAACTCTTCCTTGTTGCTGGTGATTGACAGAAGGGATGATCCTGTTACCCCGT TACTTAACCAATGGACATATCAGGCAATGGTTCATGAACTTATTGGAATTGAGAACAATA AAGTTGATCTAAGGGAATATCCTAATGTCCCTAAAGACCAGAAGGAGGTGGTTCTATCAT CAGTTCAGGATGAATTTTTTAGGGCTAACATGTTCGAGAATTTTGGTGATCTTGGTATGA ATATCAAAAGAATGGTAGATGACTTTCAACATCTTTCGAAGACCAGCCAGAATATTCAGA GCATAAGTGATATGTCAAAATTTCTGAGCAACTACCCTGAATATCGGAAGACTCATGGAA ATGTAACGAAGCATGTTGCTTTGGTCAGTGAGATGAGCAGAATTGTGGAGGAAAGGAAGA TTATGCTAATTTCCCAGACGGAGCAAGAGTTAGCATGTACAAGTGGACAAGCAGCTGCTT TCGAGGCTGTCACTTCCTTGCTAAACAATGAAAGTGTGTCTGATATTGATCGTTTACGGT TAGTATTGCTCTATGCTTTGAGGTATGAAAAGGAGAGTCCGGTTCAGTTGATGCAGCTTT TCAATAAATTGGCTTCTCGTTCTGCTAAATACAAGTCAGGGCTGGTTCAATTCCTCCTCA AACAGGCTGGTGTTGATAAGAGAACAGGTGACTTATATGGGAACCGTGATCTATTAAATA TTGCTCGCAACATGGCTCGTGGACTCAAGGGCGTTGAGAATGTATACACCCAACATCAGC CTCTTCTCTTTCAGACCATGGAAGGAATTGTAAAGGCACGATTACGAGATGCTGATTATC CGCTTGTTGGCAATCATTTCCAGCAGAACAGGCCTCAAGATGTTGTGCTGTTCATTGTTG GAGGGACGACTTACGAGGAAGCAAGATCAGTAGCCCTTTACAATGCAGCAAATCCTGGAG TTCGGTTCTTTCTTGGTGGTTCAGTGGTTCTAAATTCAAAGAGATTTCTTGATGACTTAG GAGAGGCACAGAGAATATCGAAATCGAGCAGTCTAGTATGAGCAGGCTCTTAGCTTCTAC AGCTTGAAACTTGGCAGTCTGACAATTGAAACTTGTGGTGTTTTTGCATAGAGAATCAAC TTCGTGGTAAATTTTGTAATGCACAGCTTTAGATTCATAGTGCAACACACCATACGGAAT AAAATTGTTCACAGTTCACCTAAAAACACATTTTTTGTGGTTTGCAATTATTGCTGCATA TAGGGCGCTCCGGGTGAAATTAATATTTAACGCAGTTTAGTTCAATGTCCTGGGAGAATC AACATTCAAGTCGCGCATTTTGTTGATATTTTGTCAAATTTTAGC