Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0327000-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:13173870:13176175:1 gene:Os02g0327000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GTPase-activating protein 1 description:C2 domain containing protein. (Os02t0327000-01);C2 domain containing protein. (Os02t0327000-02)
Sequence

ATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCC
GTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTG
AAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCG
ATTGAAGATCCAGCAGTTCCTGTTAGACTGGAAGTGTATGACAAAGACACATTCATCGAT
GATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGGAGGTTGTCAAGATGAAG
ATTGAGGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGC
CTAGCTGAAGAGAGCACGATATATATCTCTGAGGGGAAGGTGAAGCAAGACGTGGTTCTC
AGACTAAGGGATGTGGAATGCGGGGAAATTGAGCTCCAGCTTCAGTGGGTCGACATCCCA
GGTTCTAAGGGTGTATGA

Peptide Sequence

PEP ID

Os02t0327000-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:13173870:13176175:1 gene:Os02g0327000 transcript:Os02t0327000-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GTPase-activating protein 1 description:C2 domain containing protein. (Os02t0327000-01);C2 domain containing protein. (Os02t0327000-02)
Sequence

MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLS
IEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMKIEGVADNTVVKKVVPNRQNC
LAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV

Transcript Sequence

Transcript ID

Os02t0327000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:13173870:13176175:1 gene:Os02g0327000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GTPase-activating protein 1 description:C2 domain containing protein. (Os02t0327000-01);C2 domain containing protein. (Os02t0327000-02)
Sequence

GAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCA
GCGAGAGCGAGAGCGAGAGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTTGGGGCAT
CTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTC
CGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTC
ATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCA
GCAGTTCCTGTTAGACTGGAAGTGTATGACAAAGACACATTCATCGATGATGCAATGGGC
AATGCGGAGCTGGACATCCGCCCATTGGTGGAGGTTGTCAAGATGAAGATTGAGGGTGTT
GCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAG
AGCACGATATATATCTCTGAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGAT
GTGGAATGCGGGGAAATTGAGCTCCAGCTTCAGTGGGTCGACATCCCAGGTTCTAAGGGT
GTATGAACTCTGTACTCTGCCTATTGCTTACAGTCTTGCATAGCTCGCAAGTCCAACTCT
AAGTTTATCAGTGGACAATCAAATAAGCAACAGCTTATATTGATGAGATTCTTTTACTGT
CCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAATGGCTGTAAAATCATTCTTATGTT
GACACAGCAAGTGTCTCGAAGATCCCCCACTAGGTGTTTGGGCAGAGCAAAGTTGTACAA
TATGTCTGCAAAGTATAGTTTGGTGTTACCCTGTCTGTAGAAAAATAATCAGTGGCAGGG
GTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCT
GCGATT