Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0305600-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:11935318:11941766:-1 gene:Os02g0305600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spectrin repeat containing protein. (Os02t0305600-01)
Sequence

ATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACCTCGCCTTCTTCGGG
CTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCTCCGCCGGAGAGGTG
GCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCACCCATGCCGCGTCC
GCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCGACGAGCTCAGGCTC
AGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTTTGAAGAGTAAAGCA
AACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATGATATTGAGATTTTA
ATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTG
AAAGCTTTGGAAGATGAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAAT
GCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCA
GAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAA
CAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCC
GAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCAT
GGCACTTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACAT
GGCAGGAGTTTCATACAAGCAATGAACAGACCCTACCATGAGGTATCACGGTTCTGTAAG
GCAATATGTGGCCAGCATATTCGCGATGTTGATAAGCCTAATGTCTTCTTCTTGGGTGGA
TCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTG
GCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGT
TACAGTAGAGGTTTCGCAACTGAGATAATTACGTTCTGCTTGGCATATTTTGTTGTTATA
TCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGAAATGA

Peptide Sequence

PEP ID

Os02t0305600-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:11935318:11941766:-1 gene:Os02g0305600 transcript:Os02t0305600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spectrin repeat containing protein. (Os02t0305600-01)
Sequence

MAAAAEAVLFLLHHHLAFFGLRISPSVSVPSPRRRSAGEVALLAVVVVAALLTATTHAAS
ATIESRPADALRSEVDELRLRVLHLESLLEENTKTLKSKANNLEENSNLIGTMEHDIEIL
MNKYESTKKSQSKSYPESNVKALEDEVQLLWRVVRKMNENADSIESLANGAEKRVESLSS
EVKKMEGVIAEQWIQIRQLEQAFVLTKMMTSKVHQRSRLSETAYKWPGKDLVLKYFRNLH
GTFLMGVSYTKSCFSHTYKHGRSFIQAMNRPYHEVSRFCKAICGQHIRDVDKPNVFFLGG
SISRSCISAPYKQLKIFMLLAQNFHHKVQIFLQDAMRSNSYSRGFATEIITFCLAYFVVI
SPMWILWFLYSTRFGSKK

Transcript Sequence

Transcript ID

Os02t0305600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:11935318:11941766:-1 gene:Os02g0305600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spectrin repeat containing protein. (Os02t0305600-01)
Sequence

CATATTTGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCC
CGCCGTAAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACC
ACCACCTCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCC
GCCGCTCCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCG
CCACCACCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGG
AGGTCGACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAA
AAACTTTGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGG
AACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAAT
CCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGGTGCAGCTCCTCTGGAGAGTGG
TCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAA
GGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGA
TCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTC
ATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTA
AGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAGTCCTGCT
TTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGAACAGACCCTACCATG
AGGTATCACGGTTCTGTAAGGCAATATGTGGCCAGCATATTCGCGATGTTGATAAGCCTA
ATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAAC
TCAAGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGG
ATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGATAATTACGTTCTGCT
TGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGAT
TTGGCTCAAAGAAATGACCAGTTGCCATAAAACAAGAGTTGCATATACTGTTTTCATGTT
TTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATAT
CTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGG
TGGTGTATTTATACCCC