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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0290400-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:10990473:10993649:1 gene:Os02g0290400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal biogenesis, methyltransferase, EMG1/NEP1 domain containing protein. (Os02t0290400-01)
Sequence

ATGGGGCGGCCGTACGCGGTGAAGGGGCGGAAGAAGAAGCGGAAGCTCGACGACGGCGGG
GCCTCCCGCGAGCCCCCGGTCGACGAAGAGGCGGCGGAGGAGCTGCCGCCGCCGGAGGGG
GTGGAGGAGGAGGAGGGGAAGGAGGAGGACGTGGCGGCGGCGGCGGCGGCCGGGGAGGTT
GCTGATGGGCTACCCGTCGTGCCACGGCCGGTGGACGGGAAGCGGCGGCCCGGCGCGATC
TTCGTGCTCGAGAGGGCCTGCCTCGAGGTCGGCAAAGTCGGCAAGACTATGCAAATCCTG
AACTCGGATGACCATGCTAATTATTTGAGGAAGCAAAACAGGAATCCAGCTGATTACAGG
CCTGATATCATTCACCAGGCTCTTCTTGCAATATTTGATAGCCCACTAACTAAAGCTGGG
AGGTTACAAGCTGTTTATGTTAGGACTGAAAAGGGAGTATTGTTTGAAATCAAGCCTTAC
GTCCGCATGCCACGTACATTCAAACGTTTTTGCGGTTTAATGTCACAATTATTGCAGAAG
TTGAGCATTACAGCAGTTGGAAAGCGGGAGAAGCTTCTTAATGTCATTAAAAATCCAGTC
ACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATATAGTGCTGAGAAGTCA
GTCAATTTGTTTGACTATGTTGCCAAATCCAGTGACGATGTACCCCTTGTGTTTGTGGTA
GGTGCTATGGCTCATGGAAAGATTGACAACGAATACTCAGATGATTACATACAAATTTGC
AATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGCAGTGCTCTCGAGCAGAAG
TGGAACATCCAGTGA

Peptide Sequence

PEP ID

Os02t0290400-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:10990473:10993649:1 gene:Os02g0290400 transcript:Os02t0290400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal biogenesis, methyltransferase, EMG1/NEP1 domain containing protein. (Os02t0290400-01)
Sequence

MGRPYAVKGRKKKRKLDDGGASREPPVDEEAAEELPPPEGVEEEEGKEEDVAAAAAAGEV
ADGLPVVPRPVDGKRRPGAIFVLERACLEVGKVGKTMQILNSDDHANYLRKQNRNPADYR
PDIIHQALLAIFDSPLTKAGRLQAVYVRTEKGVLFEIKPYVRMPRTFKRFCGLMSQLLQK
LSITAVGKREKLLNVIKNPVTRYLPVGAKKIGLSYSAEKSVNLFDYVAKSSDDVPLVFVV
GAMAHGKIDNEYSDDYIQICNYPLSAACCLNRICSALEQKWNIQ

Transcript Sequence

Transcript ID

Os02t0290400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:10990473:10993649:1 gene:Os02g0290400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosomal biogenesis, methyltransferase, EMG1/NEP1 domain containing protein. (Os02t0290400-01)
Sequence

AGCTTTCCTCCCCCTCGAAACCCCACCACACCACTGCAACGCGTGCGAGCGGCGGCGAGA
GGAAGGAGGAGACCGATGGGGCGGCCGTACGCGGTGAAGGGGCGGAAGAAGAAGCGGAAG
CTCGACGACGGCGGGGCCTCCCGCGAGCCCCCGGTCGACGAAGAGGCGGCGGAGGAGCTG
CCGCCGCCGGAGGGGGTGGAGGAGGAGGAGGGGAAGGAGGAGGACGTGGCGGCGGCGGCG
GCGGCCGGGGAGGTTGCTGATGGGCTACCCGTCGTGCCACGGCCGGTGGACGGGAAGCGG
CGGCCCGGCGCGATCTTCGTGCTCGAGAGGGCCTGCCTCGAGGTCGGCAAAGTCGGCAAG
ACTATGCAAATCCTGAACTCGGATGACCATGCTAATTATTTGAGGAAGCAAAACAGGAAT
CCAGCTGATTACAGGCCTGATATCATTCACCAGGCTCTTCTTGCAATATTTGATAGCCCA
CTAACTAAAGCTGGGAGGTTACAAGCTGTTTATGTTAGGACTGAAAAGGGAGTATTGTTT
GAAATCAAGCCTTACGTCCGCATGCCACGTACATTCAAACGTTTTTGCGGTTTAATGTCA
CAATTATTGCAGAAGTTGAGCATTACAGCAGTTGGAAAGCGGGAGAAGCTTCTTAATGTC
ATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATAT
AGTGCTGAGAAGTCAGTCAATTTGTTTGACTATGTTGCCAAATCCAGTGACGATGTACCC
CTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGATTGACAACGAATACTCAGATGAT
TACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGCAGT
GCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAAA
CATTATGTGAAATTGTTGTGTACTCGCTAGCTAATGCAATTTTGCGGTCTCCTCCCATGC
TGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAAACTCCGGTGGTAATAGTGTTAAA
GTTCAATGTTTGTCGCAACAATATGTT