Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0290000-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:10960662:10968059:1 gene:Os02g0290000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0290000-01)
Sequence	ATGCTTATGTTCCCTCTCGCAAGGCCGCCGGGTCGCCATTATGCCGACGCCACGCTCCGC AGGGGGCAGTGGCGGCTCTCCCACCACCTCCGCGCCGCAGCCGCAGCCACAAGCGGTGGT GGTGCGCCCGACGTGTTCGATGCAGTGCCTGCCCTGGACGACCGCATGCGGTGCAGCGCG CTGCTCAGGGAGCGCGCAGTGGGAGGGGACCACTACGGGTGCACCTCCCTCCTCCGGTGG ATGCTGGCCCGGGGACTTCGCCCCAACAGGCTGGCGCTCGCTGCGGCGGTCAAATCGTCG TCCGCGCTCCCCGACTGCCGCGGCGGCGCGGCGCTCGGGAGGTGCCTCCACGGGCTCGCT GTCAAGGTCGGGTACGCGGATGGCGCGGTGGTGGCAAAGGCGGTCATGGACATGTACGGG AGGATCGGGTCTCTCGCGGACGCCCACACGGTGTTTGATGAGATGAGCTGCTCCGACGCG GTATGTAGGAACATCCTGATCACTGCCTCCTCCCGTGCTGGACTTTACAACGATGTGTTC CATTTGTTCCGTGCAATGCTTGCTAGTGGTGTAGATGAGAGCATGCCAACTGCAGTCACG GTCGCTGTCGTCCTTCCGGTGTGCGCAAAGTTGAGGGTGCTGAGGGCTGGAAGGAGTATC CACGGCTATGTCATCAAGACTGGTTTGGAGTTTGACACTCTGTCTGGAAATGCTTTGGTA TCAATGTACGCAAAATGTGGTGGGAGCATAGCTATGGATGATGCGCATCTAGCATTTTCT ACAATTTGTTGCAAGGATGTGGTTTCATGGAACTCAATCATTGCGGGATATTCTGAGAAT GGGTTGTTTGAAGAAGCACTTGCACTGTTTGGTCAGATGATCTCAGAGGAATGCCTTCCA AACTATTCAACATTGGCTAATGTTCTTCCCTTCTGTTCACTTGTGGAGTATGGGAGGCAC TATGGGAAAGAAATTCATGGTTTTGTGGTCCGACATGGTTTAGAAATGGATATATCTGTT AGCAATGCGCTGATGGCACATTATTCCAAGGTTTGTGAAATGAGGGCTGTAGAATCAATA TTTAGAAGTTCAAAAATGGGAGATATCGTTACATGGAACACTGTCATTGCGGGATATGTG ATGAATCGGTATCCCTCAAGGGCATTGAAACTGTTTCAGGGGCTTTTGTTTGCCGGAATG GCTCCTGATTCTGTTTCTCTTATCAGCCTACTTACTGCTTGTGCCCAAGTAGGCAATCTC AGAGTGGGCATCAGGGTTCATGGTTATATTTTTCGACATCCTGAACTTCTTCAAGAAACA TCATTAATGAATGCTCTTGTCAGCTTTTACAGCCAGTGTGACAGGTTTGATGCTGCTTTT CGATCTTTTATCACTATTCAGAACAAAGACTCAGTATCCTGGAACGCAATTCTCTCTGCT TGTGCAAACAGTGAACACCATATTGAACAGTTCTTTAGACTCCTTGGTGAAATGTGGCAT GACGTAACTCAGTGGGACTCTGTCACGATCTTGAATATTATCCGCATGAGTACGTTCTGT GGGATTAAGATGGTTCAAGAATCTCATGGATATTCCTTGCGAGTCGGTTATACTGGTGAT TCTTCAGTTGCGAATGCTATTCTAGACGCATATGCAAAGTGTGGCTACCTGCATGATGCA GAAACACTCTTCAGAAGCCTTGCAGGACGGAACATTGTTACTGGCAATACAATGATTTCT TGCTACCTAAAAAATAATTGTGTGGAGGATGCTGAGATGACCTTCAACCATATGGCTGAG AAAGATTTAACTACATGGAATCTGATGAGCCGGTTGTATGCACAGAACGATTTGTGTGAT CAAGCTTTTTGCTTGTTCCATCAGTTGCAATCTGAAGGACTAAACCCTGATACTATAAGC ATTACAAATATTCTTTCGGCTTGCATCCATCTGAGCTCAGTGCAACTTGTGAAACAATGC CATGGTTACATGCTTAGAGCATCCCTAGAAGATATTCATCTAGAAGGAGCACTTCTTGAT GCATACTCTAAGTGTGGGAACATAGCCAATGCATACAACCTCTTTCAAGTTAGCCTGCAT AAGGACCTTGTCATATTCACAGCCATGATAGGAGCTTATGCAATGCATGGAATGGCAGAA AAGGCGGTAGAACTATTCTCCAAAATGCTTACACTTGACATTAAGCCAGACCATGTAGTT CTGACTGCTCTTCTGTCAGCCTGCAGTCATGCAGGGCTTGTCGATGCTGGAATTAAGATT TTCAAGTCCATCAGAGAGATCTATGGAGTTGAACCAACAGAAGAGCACTGTGCATGCATG GTTGACCTTCTTGCCCGTTCTGGGCGTCTCCAAGATGCATACAGTTTTGCGTTGGATATG CCTCCTCATGTGGTCAATGCCAATGCATGGGGCTCCTTGCTAGGGGCATGCAAGGTCCAT GGAGAGGTCAAAATTGGTCAGCTTGCAGCTGATCGCTTGTTCTCCATGGAGGCTGAGGAC ATCGGGAACTATGTGATCATGTCAAACATCTTTGCGGCTGATGATAAATGGGAAAGTGTT GAGCATGTCAGGAAACTGATGAAATCCAAGGATATGAAAAAACCTGCAGGATGCAGCTGG ATTGAGGTTGAGAAGACACGGCATTTGTTTGTAGCCAGTGATGTTCAGCACCAAGATAGG TTTTCTATCTACGATGTGTTGGGAAGTTTGTATCAGCAAATCAGAGGTACACAGGGAGGG ACAGAACATTTAGTTGTGACTTATGAGCTGTGA

Peptide Sequence

PEP ID	Os02t0290000-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:10960662:10968059:1 gene:Os02g0290000 transcript:Os02t0290000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0290000-01)
Sequence	MLMFPLARPPGRHYADATLRRGQWRLSHHLRAAAAATSGGGAPDVFDAVPALDDRMRCSA LLRERAVGGDHYGCTSLLRWMLARGLRPNRLALAAAVKSSSALPDCRGGAALGRCLHGLA VKVGYADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVF HLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALV SMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLP NYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESI FRSSKMGDIVTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNL RVGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSA CANSEHHIEQFFRLLGEMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGD SSVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAE KDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQC HGYMLRASLEDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMAE KAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTEEHCACM VDLLARSGRLQDAYSFALDMPPHVVNANAWGSLLGACKVHGEVKIGQLAADRLFSMEAED IGNYVIMSNIFAADDKWESVEHVRKLMKSKDMKKPAGCSWIEVEKTRHLFVASDVQHQDR FSIYDVLGSLYQQIRGTQGGTEHLVVTYEL

Transcript Sequence

Transcript ID	Os02t0290000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:10960662:10968059:1 gene:Os02g0290000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0290000-01)
Sequence	GCTCCTTGTGCCGCCGCCAAGACGAACAGGGGAGGGCCGGGCGGCGAGACGAGCAGAGCA GCGGAGGGGAGGGGATCCTGTCATGGAAATTAATACTGGTGATATAAGGGGCTATGCTTA TGTTCCCTCTCGCAAGGCCGCCGGGTCGCCATTATGCCGACGCCACGCTCCGCAGGGGGC AGTGGCGGCTCTCCCACCACCTCCGCGCCGCAGCCGCAGCCACAAGCGGTGGTGGTGCGC CCGACGTGTTCGATGCAGTGCCTGCCCTGGACGACCGCATGCGGTGCAGCGCGCTGCTCA GGGAGCGCGCAGTGGGAGGGGACCACTACGGGTGCACCTCCCTCCTCCGGTGGATGCTGG CCCGGGGACTTCGCCCCAACAGGCTGGCGCTCGCTGCGGCGGTCAAATCGTCGTCCGCGC TCCCCGACTGCCGCGGCGGCGCGGCGCTCGGGAGGTGCCTCCACGGGCTCGCTGTCAAGG TCGGGTACGCGGATGGCGCGGTGGTGGCAAAGGCGGTCATGGACATGTACGGGAGGATCG GGTCTCTCGCGGACGCCCACACGGTGTTTGATGAGATGAGCTGCTCCGACGCGGTATGTA GGAACATCCTGATCACTGCCTCCTCCCGTGCTGGACTTTACAACGATGTGTTCCATTTGT TCCGTGCAATGCTTGCTAGTGGTGTAGATGAGAGCATGCCAACTGCAGTCACGGTCGCTG TCGTCCTTCCGGTGTGCGCAAAGTTGAGGGTGCTGAGGGCTGGAAGGAGTATCCACGGCT ATGTCATCAAGACTGGTTTGGAGTTTGACACTCTGTCTGGAAATGCTTTGGTATCAATGT ACGCAAAATGTGGTGGGAGCATAGCTATGGATGATGCGCATCTAGCATTTTCTACAATTT GTTGCAAGGATGTGGTTTCATGGAACTCAATCATTGCGGGATATTCTGAGAATGGGTTGT TTGAAGAAGCACTTGCACTGTTTGGTCAGATGATCTCAGAGGAATGCCTTCCAAACTATT CAACATTGGCTAATGTTCTTCCCTTCTGTTCACTTGTGGAGTATGGGAGGCACTATGGGA AAGAAATTCATGGTTTTGTGGTCCGACATGGTTTAGAAATGGATATATCTGTTAGCAATG CGCTGATGGCACATTATTCCAAGGTTTGTGAAATGAGGGCTGTAGAATCAATATTTAGAA GTTCAAAAATGGGAGATATCGTTACATGGAACACTGTCATTGCGGGATATGTGATGAATC GGTATCCCTCAAGGGCATTGAAACTGTTTCAGGGGCTTTTGTTTGCCGGAATGGCTCCTG ATTCTGTTTCTCTTATCAGCCTACTTACTGCTTGTGCCCAAGTAGGCAATCTCAGAGTGG GCATCAGGGTTCATGGTTATATTTTTCGACATCCTGAACTTCTTCAAGAAACATCATTAA TGAATGCTCTTGTCAGCTTTTACAGCCAGTGTGACAGGTTTGATGCTGCTTTTCGATCTT TTATCACTATTCAGAACAAAGACTCAGTATCCTGGAACGCAATTCTCTCTGCTTGTGCAA ACAGTGAACACCATATTGAACAGTTCTTTAGACTCCTTGGTGAAATGTGGCATGACGTAA CTCAGTGGGACTCTGTCACGATCTTGAATATTATCCGCATGAGTACGTTCTGTGGGATTA AGATGGTTCAAGAATCTCATGGATATTCCTTGCGAGTCGGTTATACTGGTGATTCTTCAG TTGCGAATGCTATTCTAGACGCATATGCAAAGTGTGGCTACCTGCATGATGCAGAAACAC TCTTCAGAAGCCTTGCAGGACGGAACATTGTTACTGGCAATACAATGATTTCTTGCTACC TAAAAAATAATTGTGTGGAGGATGCTGAGATGACCTTCAACCATATGGCTGAGAAAGATT TAACTACATGGAATCTGATGAGCCGGTTGTATGCACAGAACGATTTGTGTGATCAAGCTT TTTGCTTGTTCCATCAGTTGCAATCTGAAGGACTAAACCCTGATACTATAAGCATTACAA ATATTCTTTCGGCTTGCATCCATCTGAGCTCAGTGCAACTTGTGAAACAATGCCATGGTT ACATGCTTAGAGCATCCCTAGAAGATATTCATCTAGAAGGAGCACTTCTTGATGCATACT CTAAGTGTGGGAACATAGCCAATGCATACAACCTCTTTCAAGTTAGCCTGCATAAGGACC TTGTCATATTCACAGCCATGATAGGAGCTTATGCAATGCATGGAATGGCAGAAAAGGCGG TAGAACTATTCTCCAAAATGCTTACACTTGACATTAAGCCAGACCATGTAGTTCTGACTG CTCTTCTGTCAGCCTGCAGTCATGCAGGGCTTGTCGATGCTGGAATTAAGATTTTCAAGT CCATCAGAGAGATCTATGGAGTTGAACCAACAGAAGAGCACTGTGCATGCATGGTTGACC TTCTTGCCCGTTCTGGGCGTCTCCAAGATGCATACAGTTTTGCGTTGGATATGCCTCCTC ATGTGGTCAATGCCAATGCATGGGGCTCCTTGCTAGGGGCATGCAAGGTCCATGGAGAGG TCAAAATTGGTCAGCTTGCAGCTGATCGCTTGTTCTCCATGGAGGCTGAGGACATCGGGA ACTATGTGATCATGTCAAACATCTTTGCGGCTGATGATAAATGGGAAAGTGTTGAGCATG TCAGGAAACTGATGAAATCCAAGGATATGAAAAAACCTGCAGGATGCAGCTGGATTGAGG TTGAGAAGACACGGCATTTGTTTGTAGCCAGTGATGTTCAGCACCAAGATAGGTTTTCTA TCTACGATGTGTTGGGAAGTTTGTATCAGCAAATCAGAGGTACACAGGGAGGGACAGAAC ATTTAGTTGTGACTTATGAGCTGTGACATAAAACACTCAGTAAATTACTTGGTGTTCTGG CCCCGTCATTGTTTTGGGTTGCCAAAGATCTCCATGGAACTGAGTGACCTTTCCATCACA TCTTCCGTGGACAACAAATGGAGACATCTGCTTACAACCGTGAACCGGTTGGAGTGTCTT TGTCAGCTCAAAAAAAGATTGGTTCCTGGCGATGCATTGTTCTTCCTGAGGGGAACAGCT GACGCAGCACAGACGTCCGAAGCTAGCAAGGCATCCTCGTCCTCACGTACGTCCGATCTG CCCCCTTCCACGCCGTGGTTCCGGGAGCTGTGGGTCAACGCCGACAAATAGTTGCAGCCG TCGCCTAAGGTATGTCAAATCGAGAGAGGAGATTGGACGCTGTGGCGCTGTGTTCTGTGT GGTTGGTGGTGCTTCTTGGGTCATTTGCAAACACCTCCTCTAAGATAGCCTGTCTGCAAA CACCACTTTCTTAATCGAGAAGGTGGTACTTCTTGATTCTAATTGATGAATCAAGAAAGA TGGAGTCTAGTATATACAAAATGTGGTCATTTGCAAAGCAGACAGAGAAAAGGGTTGAAG ATCTATATTCAGATGTGAAAAAGGCGAAGATGAACTTGATGAAGGAATCTAAACATTCAG TAGATCCAGAAGCTCCCTTGCTCATAGCATAGACCCTTGAATTTTATTGAATAGTTAGTT TATGAAACTTTCGTTACTGAATATATGCCAGGGTGTGCCCCCAAGAATCACGTATTTTTG GAATTTGAAATGAAATAGTACCAAACAAATTTGGAGAGTGATGAACTTTTTTCTTTAGTG ACTAATGTTTTATATTTTTGTC