Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0274100-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:10001543:10010228:1 gene:Os02g0274100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABNORMAL INFLORESCENCE MERISTEM1 description:3-hydroxyacyl-CoA dehydrogenase, Multifunctional protein, RNA- and microtubule-binding protein, Salicylic acid (SA) biosynthesis, Maintenance of root meristem activity, Beta -oxidation of fatty acids (Os02t0274100-01);Similar to Peroxisomal fatty acid beta-oxidation multifunctional protein. (Os02t0274100-02)
Sequence	ATGGCGGGGGCGATCCGCGTCACCATGGAGGTGGGCGCCGACGGCGTCGCGGTCGTCACC ATCTGCAACCCGCCCGTCAATGCGCTGCATCCCATCATCATCCAGGGATTGAAGGAGAAG TACGCGGAGGCGATGGATCGCGACGACGTCAAGGCCATCGTGCTCACCGGTGCTGGAGGC AAATTTTGTGGAGGCTTTGATATCAATGTGTTCACAGAAGTTCACAAGACTGGAAATGTA TCTCTTATGCCTGATGTATCTGTTGAGCTTGTGTCGAATTTGATGGAAGCGGGCAAAAAG CCTTCAGTTGCTGCCATTCAAGGCCTTGCTCTTGGTGGCGGTTTGGAGTTGACCATGGGT TGCCATGCTCGGATATCTACCCCTGAAGCTCAACTTGGACTACCAGAGTTGACTCTGGGC ATAATTCCTGGATTTGGAGGAACCCAGCGTCTGCCAAGGCTTGTAGGTCTGCCCAAAGCA ATAGAAATGATGCTGCAATCAAAGTTCATCACAGCAAAGGAAGGGAAAGAAGGTGGTCTT GTTGATGCCCTGTGCTCCCCTGATGAGTTGATAAAGATGTCACGCCTTTGGGCTCTGGAG ATAGCTAATTACCGTAAACCTTGGATAAGATCTCTTGCCAGAACAGATAGGCTTGGTTCA CTGTCTGAAGCTCGTTCTGTATTAAATAGTGCAAGACAGCAAGCGAAGAAGGTTGCAGCA AACTTGCCACAGCACCAGGCCTGCCTAGATGTTATGGAAGAAGGTGTACTATGTGGAGGC CATGCTGGTGTTCTGAAGGAGGCCAAGGTTTTCAAGGAGTTGGTGCTATCACCAACATCA AAGGCACTTGTACATGCTTTCTTTGCCCAGCGTTTAACCACAAAGGTGCCAGGTGTTACT GATGTTCAATTGAAACCTAGGAAAATAAGAAAAGTTGCTGTTATTGGTGGTGGTTTGATG GGCTCTGGAATTGCAACAGCTCTTCTTGTTAGCAATACATCCGTTGTGCTTAAGGAAGTA AATCCTCAATTCCTGCAAAGGGGACAGAAGATGATAGCAGCTAATCTTGAGGGTCTAGTC AAGAGGGGCTCATTGACAAAGGACAAGATGAACAAGGCCATGTCACTTCTCAAGGGTGCA TTGGATTATTCTGATTTCAAGGATGTTGATATGGTCATCGAGGCTGTCATAGAGAAGATT CCTTTGAAACAATCAATATTTTCTGACCTTGAGAAAGTATGCCCACCCCACTGCATACTT GCAACAAACACATCTACCATCGATTTGAATGTTGTGGGCGAGAAGACAAATTCTCAAGAT AGAATTATAGGGGCACATTTCTTTAGCCCTGCCCATATTATGCCTTTGCTTGAAATTGTC CGGACGGAGAAGACATCACCGCAAGCTATTCTTGATCTCATCACAGTTGGGAAAATGATA AAGAAAGTCCCTGTTGTGGTTGGGAACTGCACAGGCTTCGCAGTCAATCGTACATTTTTC CCTTACACACAGGGTTCTCATCTTCTAGTTAGTATTGGGATCGACGTTTTCAGAATTGAT CGAGTAATAAGCAGCTTTGGCATGCCAATGGGACCTTTTCAACTGCAAGATCTGGCTGGA TATGGAGTGGCATTGGCAGTAAAGGATATCTATGCGGCTGCCTTTGGAACAAGGAATCTG GACTCTAATCTGGTGGATTTGATGGTACAGAATGGACGGCAGGGAAAGAGCAATGGTAAA GGTTATTACCTTTATGAGAAGGGTGGGAAGCCGAAGCCTGACCCAAGTGTTCAGGTTGTG ATTGACGAGTACAGAAGATGTGCAAAGACAATGCCTGGTGGAAAGCCTGTTACTTTATCT GATCAAGATATATTGGAGATGATTTTCTTCCCAGTTGTTAATGAGGCATGCAGGGTCATG GATGAAAATGTTGTGATCCGAGCTTCTGATCTTGATATTGCTTCTATCCTTGGGATGGGT TTTCCCAAGTTCAGGGGTGGTCTTGTCTTTTGGGCTGACACTATTGGAGCACCTTATATA CATTCAAAGCTTAGCAAGTGGACTGAAATTTATGGCGATTTCTTCAAACCATCATCCTAT TTGGAAGATAGAGCTAAAAGAAGCCTACCATTGAGCGCACCAAACGCAACCCAGCAGGCT TCGTCGAGGTCACGCATGTGA

Peptide Sequence

PEP ID	Os02t0274100-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:10001543:10010228:1 gene:Os02g0274100 transcript:Os02t0274100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABNORMAL INFLORESCENCE MERISTEM1 description:3-hydroxyacyl-CoA dehydrogenase, Multifunctional protein, RNA- and microtubule-binding protein, Salicylic acid (SA) biosynthesis, Maintenance of root meristem activity, Beta -oxidation of fatty acids (Os02t0274100-01);Similar to Peroxisomal fatty acid beta-oxidation multifunctional protein. (Os02t0274100-02)
Sequence	MAGAIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGG KFCGGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMG CHARISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGL VDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAA NLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVT DVQLKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLV KRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCIL ATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMI KKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAG YGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLYEKGGKPKPDPSVQVV IDEYRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMG FPKFRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKRSLPLSAPNATQQA SSRSRM

Transcript Sequence

Transcript ID	Os02t0274100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:10001543:10010228:1 gene:Os02g0274100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABNORMAL INFLORESCENCE MERISTEM1 description:3-hydroxyacyl-CoA dehydrogenase, Multifunctional protein, RNA- and microtubule-binding protein, Salicylic acid (SA) biosynthesis, Maintenance of root meristem activity, Beta -oxidation of fatty acids (Os02t0274100-01);Similar to Peroxisomal fatty acid beta-oxidation multifunctional protein. (Os02t0274100-02)
Sequence	CCCGACTCCGAGAGATTACTTCCTCCACCTTCCATCCATCTCCTCTTCTCCCCCTCTCCC TCTCTCTCTCGAGATCGAACGAACGAAGAACCCTAGGTCATCCATGGCGGGGGCGATCCG CGTCACCATGGAGGTGGGCGCCGACGGCGTCGCGGTCGTCACCATCTGCAACCCGCCCGT CAATGCGCTGCATCCCATCATCATCCAGGGATTGAAGGAGAAGTACGCGGAGGCGATGGA TCGCGACGACGTCAAGGCCATCGTGCTCACCGGTGCTGGAGGCAAATTTTGTGGAGGCTT TGATATCAATGTGTTCACAGAAGTTCACAAGACTGGAAATGTATCTCTTATGCCTGATGT ATCTGTTGAGCTTGTGTCGAATTTGATGGAAGCGGGCAAAAAGCCTTCAGTTGCTGCCAT TCAAGGCCTTGCTCTTGGTGGCGGTTTGGAGTTGACCATGGGTTGCCATGCTCGGATATC TACCCCTGAAGCTCAACTTGGACTACCAGAGTTGACTCTGGGCATAATTCCTGGATTTGG AGGAACCCAGCGTCTGCCAAGGCTTGTAGGTCTGCCCAAAGCAATAGAAATGATGCTGCA ATCAAAGTTCATCACAGCAAAGGAAGGGAAAGAAGGTGGTCTTGTTGATGCCCTGTGCTC CCCTGATGAGTTGATAAAGATGTCACGCCTTTGGGCTCTGGAGATAGCTAATTACCGTAA ACCTTGGATAAGATCTCTTGCCAGAACAGATAGGCTTGGTTCACTGTCTGAAGCTCGTTC TGTATTAAATAGTGCAAGACAGCAAGCGAAGAAGGTTGCAGCAAACTTGCCACAGCACCA GGCCTGCCTAGATGTTATGGAAGAAGGTGTACTATGTGGAGGCCATGCTGGTGTTCTGAA GGAGGCCAAGGTTTTCAAGGAGTTGGTGCTATCACCAACATCAAAGGCACTTGTACATGC TTTCTTTGCCCAGCGTTTAACCACAAAGGTGCCAGGTGTTACTGATGTTCAATTGAAACC TAGGAAAATAAGAAAAGTTGCTGTTATTGGTGGTGGTTTGATGGGCTCTGGAATTGCAAC AGCTCTTCTTGTTAGCAATACATCCGTTGTGCTTAAGGAAGTAAATCCTCAATTCCTGCA AAGGGGACAGAAGATGATAGCAGCTAATCTTGAGGGTCTAGTCAAGAGGGGCTCATTGAC AAAGGACAAGATGAACAAGGCCATGTCACTTCTCAAGGGTGCATTGGATTATTCTGATTT CAAGGATGTTGATATGGTCATCGAGGCTGTCATAGAGAAGATTCCTTTGAAACAATCAAT ATTTTCTGACCTTGAGAAAGTATGCCCACCCCACTGCATACTTGCAACAAACACATCTAC CATCGATTTGAATGTTGTGGGCGAGAAGACAAATTCTCAAGATAGAATTATAGGGGCACA TTTCTTTAGCCCTGCCCATATTATGCCTTTGCTTGAAATTGTCCGGACGGAGAAGACATC ACCGCAAGCTATTCTTGATCTCATCACAGTTGGGAAAATGATAAAGAAAGTCCCTGTTGT GGTTGGGAACTGCACAGGCTTCGCAGTCAATCGTACATTTTTCCCTTACACACAGGGTTC TCATCTTCTAGTTAGTATTGGGATCGACGTTTTCAGAATTGATCGAGTAATAAGCAGCTT TGGCATGCCAATGGGACCTTTTCAACTGCAAGATCTGGCTGGATATGGAGTGGCATTGGC AGTAAAGGATATCTATGCGGCTGCCTTTGGAACAAGGAATCTGGACTCTAATCTGGTGGA TTTGATGGTACAGAATGGACGGCAGGGAAAGAGCAATGGTAAAGGTTATTACCTTTATGA GAAGGGTGGGAAGCCGAAGCCTGACCCAAGTGTTCAGGTTGTGATTGACGAGTACAGAAG ATGTGCAAAGACAATGCCTGGTGGAAAGCCTGTTACTTTATCTGATCAAGATATATTGGA GATGATTTTCTTCCCAGTTGTTAATGAGGCATGCAGGGTCATGGATGAAAATGTTGTGAT CCGAGCTTCTGATCTTGATATTGCTTCTATCCTTGGGATGGGTTTTCCCAAGTTCAGGGG TGGTCTTGTCTTTTGGGCTGACACTATTGGAGCACCTTATATACATTCAAAGCTTAGCAA GTGGACTGAAATTTATGGCGATTTCTTCAAACCATCATCCTATTTGGAAGATAGAGCTAA AAGAAGCCTACCATTGAGCGCACCAAACGCAACCCAGCAGGCTTCGTCGAGGTCACGCAT GTGAGATGCTATTTCAGCTGATGGCAGAATAATTGCTTGATGTGCATCGGCACCCTAGTT GACCCTCATATCTGGGACCTGAAAAAGGAGGTCAGAGCAGTGTTCACCATGTAATCTCTT TTGGATATTTTGGCCTTTCCGGTTTTCCGAACTGGGTTGCTATGGCAATCGGAGTAATAA ATGTTGGCTTCGGATGCCACAAAACTGTAACTTTATGGCCGATAGCCTTTTACTCCAGTG TTACATTAAAATGTATATGGTACAGTGTTTTTTTAACTTGTAGTAAAATAATATGCATGC TCTCCGAATAGTCATCTCAGCTTCCCAGTTTATTTCACTTAAAACGTAAGGGGGAAGGCA GTAATCTGACTCACCCAAGTTCGAACGTCTTGCTTTGATTATCAATGTAAGGTGTAAAGT CTATCATGTAATGTGTTCGTTGTGGTGATGTGTGTGCCCATCTACTACTATGAACAAATG GAATTTTGGAACCAAGTCAGAGCATTTTACTC