Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0267900-00
CDS Infomation

cds chromosome:IRGSP-1.0:2:9574547:9575502:1 gene:Os02g0267900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 24 description:Similar to Expansin-A24. (Os02t0267900-00)
Sequence

ATGGCGGATATGGCTCCAGCTCGAGCACTCGCCTTGGTGTTGCTCGCAGTTGCAGTCGGC
AGCGCGTTGATGGCCGCGGCCCAGGATGCGCCGTCGCCACCGACACCGATGGCTCCGTCT
CCGTCTACCGATGAAACTCCGCCCGTGTGGCTGAAGGCGCACGCGACGTTCTACGGCGGG
GCGGACGCGTCGGGCACCATGGGCGGGGCGTGCGGCTACGTCGACCTGTACTCGCAGGGG
TACGGGACGCGGAACGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGTCGTGCGGG
CAGTGCTACAAGATCGCCTGCGACCGCAAGAGGGCGCCGCAGTGGTGCAAGCCCGGCGTC
ACGGTCACCGTCACCGCCACCAACTTCTGCCCGCCCAACTGGAACCTCCCCAGCGACAAC
GGCGGCTGGTGCAACCCGCCGCGGCCGCACTTCGACATGGCGCAGCCTGCTTGGGAGAAG
ATTGGCATCTACCGTGCTGGCATCATCCCGGTCATGTACCAAAGGGTTCCGTGTGTGAAG
AAGGGTGGGGTGCGGTTTACCATCAATGGGCATGACTACTTTAATCTTGTGCTCGTGACA
AATGTTGCAACCACTGGTTCGATCAAGTCGATGGACATCATGGGCTCCAACTCAACCGAC
TGGATGCCAATGGTGAGGAACTGGGGTGCAAACTGGCACTCGCTGTCGTATCTCACCGGG
CAGATGCTCTCCTTCAGGGTGACGAACATGGATGGCCAGACACTAGTCTTTAGGAACATT
GTGCCCTCTGGATGGAAGTTCGGGCAAACATTTGCAAGCAAACTGCAGTTCAAGTAA

Peptide Sequence

PEP ID

Os02t0267900-00
PEP Infomation

pep chromosome:IRGSP-1.0:2:9574547:9575502:1 gene:Os02g0267900 transcript:Os02t0267900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 24 description:Similar to Expansin-A24. (Os02t0267900-00)
Sequence

MADMAPARALALVLLAVAVGSALMAAAQDAPSPPTPMAPSPSTDETPPVWLKAHATFYGG
ADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGV
TVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVK
KGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTG
QMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK

Transcript Sequence

Transcript ID

Os02t0267900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:9574547:9575502:1 gene:Os02g0267900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 24 description:Similar to Expansin-A24. (Os02t0267900-00)
Sequence

ACGTCCATGGCGGATATGGCTCCAGCTCGAGCACTCGCCTTGGTGTTGCTCGCAGTTGCA
GTCGGCAGCGCGTTGATGGCCGCGGCCCAGGATGCGCCGTCGCCACCGACACCGATGGCT
CCGTCTCCGTCTACCGATGAAACTCCGCCCGTGTGGCTGAAGGCGCACGCGACGTTCTAC
GGCGGGGCGGACGCGTCGGGCACCATGGGCGGGGCGTGCGGCTACGTCGACCTGTACTCG
CAGGGGTACGGGACGCGGAACGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGTCG
TGCGGGCAGTGCTACAAGATCGCCTGCGACCGCAAGAGGGCGCCGCAGTGGTGCAAGCCC
GGCGTCACGGTCACCGTCACCGCCACCAACTTCTGCCCGCCCAACTGGAACCTCCCCAGC
GACAACGGCGGCTGGTGCAACCCGCCGCGGCCGCACTTCGACATGGCGCAGCCTGCTTGG
GAGAAGATTGGCATCTACCGTGCTGGCATCATCCCGGTCATGTACCAAAGGGTTCCGTGT
GTGAAGAAGGGTGGGGTGCGGTTTACCATCAATGGGCATGACTACTTTAATCTTGTGCTC
GTGACAAATGTTGCAACCACTGGTTCGATCAAGTCGATGGACATCATGGGCTCCAACTCA
ACCGACTGGATGCCAATGGTGAGGAACTGGGGTGCAAACTGGCACTCGCTGTCGTATCTC
ACCGGGCAGATGCTCTCCTTCAGGGTGACGAACATGGATGGCCAGACACTAGTCTTTAGG
AACATTGTGCCCTCTGGATGGAAGTTCGGGCAAACATTTGCAAGCAAACTGCAGTTCAAG
TAATTTAATTCCCGGAAAGA