Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0245800-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:8244347:8248444:-1 gene:Os02g0245800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHAKER POTASSIUM CHANNEL 3 description:Inward rectifying shaker-like potassium channel, Negative regulation of OsKAT2 channel activity (Os02t0245800-01)
Sequence	ATGACCCAAGCTCACTCAAAATCTTGCTTCCACCAGTTCTGGGATGGACTCCAGATCAAG AGGAGCAGCGATAGCTTCACTGTAGAGCTACTGCCATCCCTTGGTGCAACTATAAACCAC TCCAACAAGTTGCAGAAGTTCATCATATCGCCTTATGATCCCCGGTACAGATCCTGGGAG CTGTTCCTTATAGTCCTAGTTGTTTACTCTGCCTGGATTTGTCCGTTTGAACTAGCATTC CTGAGGGACTTACCATCTAAGCTTTTGCTAGTTGAGAACATTGTGGATATATTCTTTGCC ATTGATATTGTTTTGACGTTCTTCGTTGCTTATGTCGATAGCAAAACACATCTTCTTGTG GATGACCGAAAGAGAATTGCAATGAGGTACCTATCCACTTGGTTTATCTTTGATGTATGT TCAACAGCACCATTTCAACCAATCATCCTTCTATTTACACACAAGGGGAATGACATTGCT TTCAAGGTACTCAATTTGCTCAGGCTGTGGCGTCTTCACCGAGTCAGTTCACTATTTGCC AGGCTGGAGAAAGACATCCGATTCAACTATTTCTGGACTAGGTGCTCAAAACTTATTTCT GTGACCCTCTTCGCAGTACATTGTGCAGGATGCTTCAATTATATGATTGCTGACAGATAT CCCAACCCAGAGAAAACATGGATAGGAGCTGTGATGTCAACTTTCAGATCAGAGAGCTTA TGGACTAGATATATTACTGCTCTTTACTGGTCCATTACAACACTGACAACAACAGGATAT GGGGACCTACATGCTGAAAATCCAACAGAGATGCTATTTGATATTGTCTATATGATGTTT AATCTGGGCTTGACAGCTTATCTCATTGGCAACATGACCAACCTAGTTGTCCATGGGACC AGCCGCACCAGGAAATTTAGGGACTCAATCCAAGCAGCATCAGAGTTTGCAGCACGCAAT CAGCTACCTGAGAACATAAAGCAGCAAGTGCTATCTCACTTCTGCCTACAATTCAAGACA GAGGGACTCAACCAGCAGGTCATGTTAGACTGTCTACCAAAAGGAATCCGCTCAAGCATA GCATACAGCTTATTCTTTCCGATCATCCGGCAAGCCTATCTCTTCAATGGAGTATCTGGC AATTTCATTGCAGAACTGGTCATGGAAGTGCAGGCTGAGTACTTCCCACCAAAGGAAGAT ATAATATTGCAGAATGAAGGAGAAGCAGATGTTTACATAGTAGTTTCAGGAGCAGTGAAT ATAATAACAACAATACATGGGAATGAGCAGGTATATGAGAAAATTGCAGAGGGAGAAATG TTTGGAGAGGTTGGTTCTTTATGTAACATACCCCAGCCATTTACTTGCCGCACAGCGGAG CTATCACAGCTTTTAAGAATAAGCAAAACAAGGCTTAGAGAGATCATTGAAGAAAACAGG GAAGACAGTAACATTCTAATGAACAACCTAGTTCAGAAGCTGAAGCTACGAGAAAGTTTA CCTGACATGAATCAACCAGACCGAAGATTCTTGAGCAAGTATGAGCTATTCCACGTTCCT CGAGAAGCATGGCTGCTGAAAAAGTCACAACTACATTACACAGAGCACACAAGTAGGGAT TCTAGTAACAACACTCCAGTATTTGGAGGTGACAGATATTCCAGACAGTTACTTGGAGAA GCAACCCGATCTTCGGCATCAGAAAACGAAAATAGCAGTATGACAGATAAAGAAGAGAAC CATGATGAAGTTCACACAAACTGTGAGATCAAAAAAAGAACGGAAGAGCACTGTATCCAG ATAAACTCTGAAGATAGCAGCTCCACATACAGTCAGCGAACAATGAATGCAACAGTGCAG ACAGGGTCTCCACATAAAACAGAAGAAAACATAACAAGAAGAATTCCAGATGAGTACTAC ATAAAAGAAGCAAACAAAAGAGTTACAATTCACAAATATCGTCATAACTCAACAGTCTCT GCTGCGCAAAATGGAAAGCTTATCAAGCTGCCTACATCATTGGAGGAACTGTTCAAAATT GGCAGTCAGAAGTTTCAAGGTTTTCATCCTAGAAAGGTGGTCAGTAGAGATTATGCTGAA ATAGATGATGTCAGTGTTATCCGCGATGGCGACCATCTATTCCTTCTTGAGATGTAG

Peptide Sequence

PEP ID	Os02t0245800-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:8244347:8248444:-1 gene:Os02g0245800 transcript:Os02t0245800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHAKER POTASSIUM CHANNEL 3 description:Inward rectifying shaker-like potassium channel, Negative regulation of OsKAT2 channel activity (Os02t0245800-01)
Sequence	MTQAHSKSCFHQFWDGLQIKRSSDSFTVELLPSLGATINHSNKLQKFIISPYDPRYRSWE LFLIVLVVYSAWICPFELAFLRDLPSKLLLVENIVDIFFAIDIVLTFFVAYVDSKTHLLV DDRKRIAMRYLSTWFIFDVCSTAPFQPIILLFTHKGNDIAFKVLNLLRLWRLHRVSSLFA RLEKDIRFNYFWTRCSKLISVTLFAVHCAGCFNYMIADRYPNPEKTWIGAVMSTFRSESL WTRYITALYWSITTLTTTGYGDLHAENPTEMLFDIVYMMFNLGLTAYLIGNMTNLVVHGT SRTRKFRDSIQAASEFAARNQLPENIKQQVLSHFCLQFKTEGLNQQVMLDCLPKGIRSSI AYSLFFPIIRQAYLFNGVSGNFIAELVMEVQAEYFPPKEDIILQNEGEADVYIVVSGAVN IITTIHGNEQVYEKIAEGEMFGEVGSLCNIPQPFTCRTAELSQLLRISKTRLREIIEENR EDSNILMNNLVQKLKLRESLPDMNQPDRRFLSKYELFHVPREAWLLKKSQLHYTEHTSRD SSNNTPVFGGDRYSRQLLGEATRSSASENENSSMTDKEENHDEVHTNCEIKKRTEEHCIQ INSEDSSSTYSQRTMNATVQTGSPHKTEENITRRIPDEYYIKEANKRVTIHKYRHNSTVS AAQNGKLIKLPTSLEELFKIGSQKFQGFHPRKVVSRDYAEIDDVSVIRDGDHLFLLEM

Transcript Sequence

Transcript ID	Os02t0245800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:8244347:8248444:-1 gene:Os02g0245800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHAKER POTASSIUM CHANNEL 3 description:Inward rectifying shaker-like potassium channel, Negative regulation of OsKAT2 channel activity (Os02t0245800-01)
Sequence	CTCTGCAAACAGAGTTGGGTGGCCAAGAACAAGAACAGCAAAGCAACCATGACCCAAGCT CACTCAAAATCTTGCTTCCACCAGTTCTGGGATGGACTCCAGATCAAGAGGAGCAGCGAT AGCTTCACTGTAGAGCTACTGCCATCCCTTGGTGCAACTATAAACCACTCCAACAAGTTG CAGAAGTTCATCATATCGCCTTATGATCCCCGGTACAGATCCTGGGAGCTGTTCCTTATA GTCCTAGTTGTTTACTCTGCCTGGATTTGTCCGTTTGAACTAGCATTCCTGAGGGACTTA CCATCTAAGCTTTTGCTAGTTGAGAACATTGTGGATATATTCTTTGCCATTGATATTGTT TTGACGTTCTTCGTTGCTTATGTCGATAGCAAAACACATCTTCTTGTGGATGACCGAAAG AGAATTGCAATGAGGTACCTATCCACTTGGTTTATCTTTGATGTATGTTCAACAGCACCA TTTCAACCAATCATCCTTCTATTTACACACAAGGGGAATGACATTGCTTTCAAGGTACTC AATTTGCTCAGGCTGTGGCGTCTTCACCGAGTCAGTTCACTATTTGCCAGGCTGGAGAAA GACATCCGATTCAACTATTTCTGGACTAGGTGCTCAAAACTTATTTCTGTGACCCTCTTC GCAGTACATTGTGCAGGATGCTTCAATTATATGATTGCTGACAGATATCCCAACCCAGAG AAAACATGGATAGGAGCTGTGATGTCAACTTTCAGATCAGAGAGCTTATGGACTAGATAT ATTACTGCTCTTTACTGGTCCATTACAACACTGACAACAACAGGATATGGGGACCTACAT GCTGAAAATCCAACAGAGATGCTATTTGATATTGTCTATATGATGTTTAATCTGGGCTTG ACAGCTTATCTCATTGGCAACATGACCAACCTAGTTGTCCATGGGACCAGCCGCACCAGG AAATTTAGGGACTCAATCCAAGCAGCATCAGAGTTTGCAGCACGCAATCAGCTACCTGAG AACATAAAGCAGCAAGTGCTATCTCACTTCTGCCTACAATTCAAGACAGAGGGACTCAAC CAGCAGGTCATGTTAGACTGTCTACCAAAAGGAATCCGCTCAAGCATAGCATACAGCTTA TTCTTTCCGATCATCCGGCAAGCCTATCTCTTCAATGGAGTATCTGGCAATTTCATTGCA GAACTGGTCATGGAAGTGCAGGCTGAGTACTTCCCACCAAAGGAAGATATAATATTGCAG AATGAAGGAGAAGCAGATGTTTACATAGTAGTTTCAGGAGCAGTGAATATAATAACAACA ATACATGGGAATGAGCAGGTATATGAGAAAATTGCAGAGGGAGAAATGTTTGGAGAGGTT GGTTCTTTATGTAACATACCCCAGCCATTTACTTGCCGCACAGCGGAGCTATCACAGCTT TTAAGAATAAGCAAAACAAGGCTTAGAGAGATCATTGAAGAAAACAGGGAAGACAGTAAC ATTCTAATGAACAACCTAGTTCAGAAGCTGAAGCTACGAGAAAGTTTACCTGACATGAAT CAACCAGACCGAAGATTCTTGAGCAAGTATGAGCTATTCCACGTTCCTCGAGAAGCATGG CTGCTGAAAAAGTCACAACTACATTACACAGAGCACACAAGTAGGGATTCTAGTAACAAC ACTCCAGTATTTGGAGGTGACAGATATTCCAGACAGTTACTTGGAGAAGCAACCCGATCT TCGGCATCAGAAAACGAAAATAGCAGTATGACAGATAAAGAAGAGAACCATGATGAAGTT CACACAAACTGTGAGATCAAAAAAAGAACGGAAGAGCACTGTATCCAGATAAACTCTGAA GATAGCAGCTCCACATACAGTCAGCGAACAATGAATGCAACAGTGCAGACAGGGTCTCCA CATAAAACAGAAGAAAACATAACAAGAAGAATTCCAGATGAGTACTACATAAAAGAAGCA AACAAAAGAGTTACAATTCACAAATATCGTCATAACTCAACAGTCTCTGCTGCGCAAAAT GGAAAGCTTATCAAGCTGCCTACATCATTGGAGGAACTGTTCAAAATTGGCAGTCAGAAG TTTCAAGGTTTTCATCCTAGAAAGGTGGTCAGTAGAGATTATGCTGAAATAGATGATGTC AGTGTTATCCGCGATGGCGACCATCTATTCCTTCTTGAGATGTAGAGAAGAAAACGCCAT AACAACCTAACTGGACAAGTTAGAACTCTGGCATAAGTAATGGATGCACATCAAGATTCA GAACTGAAGATATGAAGAGGAATGACATTTTGACACTTCAATTTGTTTAATAGTTACTGA CAT