Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0245100-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:8205190:8206393:-1 gene:Os02g0245100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-39 description:Similar to Peroxisomal targeting signal type 2 receptor. (Os02t0245100-01);Conserved hypothetical protein. (Os02t0245100-02)
Sequence

ATGCCGGCGTTCAAGGCGCCGGCGCCGGGCTTCTCCGTGCGCTTCAGCCCGTTCCACGAG
CAGCGCCTCCTCGCGGCCGCCTCCCAGCACTTCGGATTAGTCGGCAACGGCCACCTCCTC
GTCCTCGACCTCTCCGCCGCCGCCGCCCCGGGGGGCGCGCCGGCGCCCCCGCCGGTGTTC
GCCTTCCCGACCTCCGACGCGCTGTTCGACTGCGCGTGGTCGGAGTCCCACGAGTCCCTC
TGCGCCGCCGCCTCCGGGGACGGGTCCGTGCGCCTGTTCGACGTCGCGCTGCCGCCCGCG
CAGAACCCCGTCCGCCTCCTCCGGGAGCACGCGCGGGAGGTGCACGGCCTCGACTGGAAC
CCCGTCCGCCGCGACGCCTTCCTCTCCGCGTCCTGGGACGACACGCTCAAGCTCTGGTCC
CCGGACCGCCCGGCCTCCGTGCGCACCTTCCGCGGCCACGAGTACTGCGTCTACGCCGCC
GCGTGGTCGGCGCGCCACCCGGACGTCTTCGCCTCCGCGTCCGGCGACCGCACCGCCCGC
GTCTGGGACGTGCGCGAGCCGGCGCCCACGCTGGTCATCCCGGCGCACGACCACGAGGTG
CTCTCGCTCGACTGGGACAAGTACGATCCGTCCATCCTCGCCACCGGCTCCGTCGACAAG
TCGATCCGCGTCTGGGACGTCCGCGCGCCGCGGGCGCCGCTGGCGCAGCTCGCCGGGCAC
GGGTACGCCGTCAAGCGCGTCAAGTTCTCGCCGCACCGGCAGGGCATGCTCATGTCCTGC
TCCTACGACATGACGGTGTGCATGTGGGATTACCGCAAGGAGGACGCGCTGCTCGCGAGG
TATGGCCACCACACTGAATTCGTTGCCGGGATCGACATGAGCGTGCTCGTGGAAGGGTTG
CTCGCGAGCACCGGGTGGGACGAGATGATCTATGTGTGGCCATTTGGCTCTGATCCTAGA
GCAATGTAA

Peptide Sequence

PEP ID

Os02t0245100-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:8205190:8206393:-1 gene:Os02g0245100 transcript:Os02t0245100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-39 description:Similar to Peroxisomal targeting signal type 2 receptor. (Os02t0245100-01);Conserved hypothetical protein. (Os02t0245100-02)
Sequence

MPAFKAPAPGFSVRFSPFHEQRLLAAASQHFGLVGNGHLLVLDLSAAAAPGGAPAPPPVF
AFPTSDALFDCAWSESHESLCAAASGDGSVRLFDVALPPAQNPVRLLREHAREVHGLDWN
PVRRDAFLSASWDDTLKLWSPDRPASVRTFRGHEYCVYAAAWSARHPDVFASASGDRTAR
VWDVREPAPTLVIPAHDHEVLSLDWDKYDPSILATGSVDKSIRVWDVRAPRAPLAQLAGH
GYAVKRVKFSPHRQGMLMSCSYDMTVCMWDYRKEDALLARYGHHTEFVAGIDMSVLVEGL
LASTGWDEMIYVWPFGSDPRAM

Transcript Sequence

Transcript ID

Os02t0245100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:8205190:8206393:-1 gene:Os02g0245100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsWD40-39 description:Similar to Peroxisomal targeting signal type 2 receptor. (Os02t0245100-01);Conserved hypothetical protein. (Os02t0245100-02)
Sequence

AGAAAAAAAAAAGAGAAGGGGCAAGTCTTCCCCAAGTCACACCATCCCCGTCCCGGATCC
GGCGACCACCGATTCCTCGCCGCCGCCGACGACGATGCCGGCGTTCAAGGCGCCGGCGCC
GGGCTTCTCCGTGCGCTTCAGCCCGTTCCACGAGCAGCGCCTCCTCGCGGCCGCCTCCCA
GCACTTCGGATTAGTCGGCAACGGCCACCTCCTCGTCCTCGACCTCTCCGCCGCCGCCGC
CCCGGGGGGCGCGCCGGCGCCCCCGCCGGTGTTCGCCTTCCCGACCTCCGACGCGCTGTT
CGACTGCGCGTGGTCGGAGTCCCACGAGTCCCTCTGCGCCGCCGCCTCCGGGGACGGGTC
CGTGCGCCTGTTCGACGTCGCGCTGCCGCCCGCGCAGAACCCCGTCCGCCTCCTCCGGGA
GCACGCGCGGGAGGTGCACGGCCTCGACTGGAACCCCGTCCGCCGCGACGCCTTCCTCTC
CGCGTCCTGGGACGACACGCTCAAGCTCTGGTCCCCGGACCGCCCGGCCTCCGTGCGCAC
CTTCCGCGGCCACGAGTACTGCGTCTACGCCGCCGCGTGGTCGGCGCGCCACCCGGACGT
CTTCGCCTCCGCGTCCGGCGACCGCACCGCCCGCGTCTGGGACGTGCGCGAGCCGGCGCC
CACGCTGGTCATCCCGGCGCACGACCACGAGGTGCTCTCGCTCGACTGGGACAAGTACGA
TCCGTCCATCCTCGCCACCGGCTCCGTCGACAAGTCGATCCGCGTCTGGGACGTCCGCGC
GCCGCGGGCGCCGCTGGCGCAGCTCGCCGGGCACGGGTACGCCGTCAAGCGCGTCAAGTT
CTCGCCGCACCGGCAGGGCATGCTCATGTCCTGCTCCTACGACATGACGGTGTGCATGTG
GGATTACCGCAAGGAGGACGCGCTGCTCGCGAGGTATGGCCACCACACTGAATTCGTTGC
CGGGATCGACATGAGCGTGCTCGTGGAAGGGTTGCTCGCGAGCACCGGGTGGGACGAGAT
GATCTATGTGTGGCCATTTGGCTCTGATCCTAGAGCAATGTAAACAAAATGCCTTTGGAG
AACACATATTTCGTACGTCGAGGGATATGGATTATTTCTGTTGCGTTTTGCATTGGTCAT
AGTAATACATGTGGATTAACTCCTTTGAGTTGAAGAAATTGCAATAAAGATCCTATTGCT
ATCT