Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0244700-02
CDS Infomation	cds chromosome:IRGSP-1.0:2:8177820:8184167:-1 gene:Os02g0244700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PEP carboxylase 1, Phosphoenolpyruvate carboxylase 1, PEPCase 1 description:Similar to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (CP21). (Os02t0244700-01);Similar to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (CP21). (Os02t0244700-02);Similar to Phosphoenolpyruvate carboxylase. (Os02t0244700-03);Similar to Phosphoenolpyruvate carboxylase. (Os02t0244700-04)
Sequence	ATGGCCGCGGCCGCCGGGAAGGCGGCGATGGAGCGGCACCAGTCGATCGACGCGCAGCTG CGGCTGCTCGCGCCGGGGAAGGTATCCGAGGACGACAAGCTCGTCGAGTACGACGCCCTC CTCGTCGACCGCTTCCTCGACATCCTCCAGGACCTGCACGGCCCTCACCTCCGCGAATTC GTGCAGGAGTGCTACGAGCTGTCGGCGGAGTACGAGAACGACAGGGACGAGGCGCGGCTC GACGAGCTGGGGAGGAAGCTCACCAGCCTGCCGCCGGGGGACTCCATCGTCGTCTCCAGC TCCTTCTCGCACATGCTCAACCTCGCCAACCTCGCCGAGGAGGTGCAGATCGCGCACCGC CGCCGGATCAAGCTCAAGCGCGGGGACTTCGCCGACGAGGCCTCCGCGCCCACCGAGTCC GACATCGAGGAGACGCTCAAGCGCCTCGTCACCCAGCTCGGCAAGTCGAGGGAGGAGGTG TTCGATGCGCTCAAGAACCAGACCGTTGACCTCGTGTTCACCGCGCATCCAACGCAGTCC GTCAGGAGGTCCCTGCTCCAGAAGCACGGGAGGATCCGGAATTGCCTGAGGCAGTTATAT GCGAAAGACATCACTGCTGATGACAAGCAGGAGCTTGATGAGGCCCTGCAGAGGGAGATT CAAGCAGCTTTCAGAACTGATGAAATCCGCAGGACTCCTCCCACTCCTCAGGATGAAATG CGCGCCGGGATGAGTTATTTTCATGAAACTATATGGAAGGGTGTACCAAAGTTCTTGCGC CGCATTGATACTGCTCTGAAAAATATTGGGATTAATGAGCGTCTTCCTTACAATGCTCCT CTCATCCAGTTCTCATCCTGGATGGGTGGTGACCGTGATGGAAACCCAAGAGTTACACCA GAGGTTACAAGAGATGTATGCTTGTTGGCAAGAATGATGGCTGCTAACCTGTACTTCTCT CAGATAGAAGATCTGATGTTTGAGCTCTCTATGTGGCGCTGCAGTGATGAACTTCGAATT CGTGCAGATGATTTGCATTGCTCCTCCAGAAAAGCTGCAAAGCACTATATAGAATTCTGG AAGCAAATTCCTCCAAATGAGCCTTATCGTGTCATACTTGGTGGTGTCAGGGATAAATTG TACTATACGCGTGAACGTACTCGCCATCTATTGACAACTGGAGTTTCTGAAATTCCAGAG GAGGCAACGTTTACTAATGTTGAAGAGTTTCTGGAGCCGCTTGAGCTGTGCTACAGATCA TTATGTGCTTGTGGTGACAAACCTATAGCTGATGGAAGCCTTCTTGATTTCTTGCGTCAA GTATCAACTTTTGGGCTGGCTCTTGTAAAACTTGACATAAGGCAGGAGTCTGATCGACAC ACTGATGTCCTTGATGCCATAACTACATATCTTGGGATTGGATCTTACGCTGAATGGTCT GAGGAGAAACGCCAGGATTGGCTTTTGTCCGAACTAAGGGGCAAACGTCCTTTGTTTGGT CCTGATCTTCCTCAGACTGAAGAAATTGCTGATGTTTTAGGAACATTTCACGTCCTTGCT GAGCTCCCGGCAGATTGTTTTGGTGCTTACATCATCTCAATGGCAACTGCACCATCTGAT GTGCTTGCTGTGGAGCTTCTACAGCGGGAGTGCCATATAAAACAGCCTCTGCGAGTTGTT CCCCTATTTGAGAAACTTGCAGATCTTGAAGCAGCTCCAGCAGCGGTGGCACGACTATTT TCAATAGACTGGTACATGAATAGGATTAATGGCAAGCAGGAGGTCATGATTGGATACTCA GACTCTGGCAAGGATGCTGGTCGTCTTTCTGCAGCATGGCAAATGTACAAAGCACAAGAG GAGCTTGTCAAGGTGGCAAAGCATTATGGTGTAAAGTTGACAATGTTCCATGGAAGAGGT GGAACAGTTGGCAGAGGAGGTGGTCCCAGTCATCTTGCCATATTATCTCAACCACCAGAC ACGATACATGGATCACTTCGTGTAACAGTACAGGGCGAGGTTATTGAACACTCGTTTGGA GAGGAACACTTGTGCTTTAGAACTCTGCAGCGCTTTACTGCAGCTACTCTTGAGCATGGA ATGCATCCTCCAATTTCCCCCAAACCAGAATGGCGTGCTCTAATGGATGAGATGGCTGTT GTGGCAACAAAGGAATATCGATCAATCGTCTTCAAGGAGCCACGGTTTGTTGAATACTTC CGATCGGCAACACCTGAGACAGAATATGGCAGGATGAACATTGGTAGCCGACCATCAAAG AGAAAGCCTAGTGGTGGCATTGAATCGCTCCGTGCAATTCCTTGGATTTTTGCTTGGACA CAAACTAGGTTTCATCTTCCTGTATGGCTTGGATTTGGTGGAGCGTTCAAACATATAATG CAGAAGGATATCAGGAACATCCATACACTGAAAGAAATGTACAATGAGTGGCCATTCTTC AGGGTCACCTTGGACTTGCTTGAGATGGTTTTCGCCAAGGGAGATCCAGGAATTGCTGCT TTATATGACAAATTGCTTGTGGCAGGTGATCTGCAATCCTTTGGAGAGCAGCTGAGAAAC AACTTTGAAGAGACAAAACAGCTACTCCTTCAGGTTGCCGGTCACAAGGATATTCTGGAA GGGGATCCTTACCTGAAGCAGCGTCTGCGGCTGCGTGAGTCGTACATCACTACCTTGAAC GTTTGCCAAGCCTACACCCTGAAGCGGATAAGGGACCCTAGCTTCGAGGTGATGTCGCAG CCGGCCTTGTCGAAGGAGTTCGTCGACAGCAACCAGCCTGCCGAGCTGGTCCAACTGAAC GCTGCGAGCGAGTACGCACCTGGCCTGGAGGACACCCTCATCCTGACGATGAAGGGCATT GCTGCCGGCATGCAGAACACAGGCTAG

Peptide Sequence

PEP ID	Os02t0244700-02
PEP Infomation	pep chromosome:IRGSP-1.0:2:8177820:8184167:-1 gene:Os02g0244700 transcript:Os02t0244700-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PEP carboxylase 1, Phosphoenolpyruvate carboxylase 1, PEPCase 1 description:Similar to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (CP21). (Os02t0244700-01);Similar to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (CP21). (Os02t0244700-02);Similar to Phosphoenolpyruvate carboxylase. (Os02t0244700-03);Similar to Phosphoenolpyruvate carboxylase. (Os02t0244700-04)
Sequence	MAAAAGKAAMERHQSIDAQLRLLAPGKVSEDDKLVEYDALLVDRFLDILQDLHGPHLREF VQECYELSAEYENDRDEARLDELGRKLTSLPPGDSIVVSSSFSHMLNLANLAEEVQIAHR RRIKLKRGDFADEASAPTESDIEETLKRLVTQLGKSREEVFDALKNQTVDLVFTAHPTQS VRRSLLQKHGRIRNCLRQLYAKDITADDKQELDEALQREIQAAFRTDEIRRTPPTPQDEM RAGMSYFHETIWKGVPKFLRRIDTALKNIGINERLPYNAPLIQFSSWMGGDRDGNPRVTP EVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCSDELRIRADDLHCSSRKAAKHYIEFW KQIPPNEPYRVILGGVRDKLYYTRERTRHLLTTGVSEIPEEATFTNVEEFLEPLELCYRS LCACGDKPIADGSLLDFLRQVSTFGLALVKLDIRQESDRHTDVLDAITTYLGIGSYAEWS EEKRQDWLLSELRGKRPLFGPDLPQTEEIADVLGTFHVLAELPADCFGAYIISMATAPSD VLAVELLQRECHIKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYMNRINGKQEVMIGYS DSGKDAGRLSAAWQMYKAQEELVKVAKHYGVKLTMFHGRGGTVGRGGGPSHLAILSQPPD TIHGSLRVTVQGEVIEHSFGEEHLCFRTLQRFTAATLEHGMHPPISPKPEWRALMDEMAV VATKEYRSIVFKEPRFVEYFRSATPETEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWT QTRFHLPVWLGFGGAFKHIMQKDIRNIHTLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAA LYDKLLVAGDLQSFGEQLRNNFEETKQLLLQVAGHKDILEGDPYLKQRLRLRESYITTLN VCQAYTLKRIRDPSFEVMSQPALSKEFVDSNQPAELVQLNAASEYAPGLEDTLILTMKGI AAGMQNTG

Transcript Sequence

Transcript ID	Os02t0244700-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:8177820:8184167:-1 gene:Os02g0244700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PEP carboxylase 1, Phosphoenolpyruvate carboxylase 1, PEPCase 1 description:Similar to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (CP21). (Os02t0244700-01);Similar to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (CP21). (Os02t0244700-02);Similar to Phosphoenolpyruvate carboxylase. (Os02t0244700-03);Similar to Phosphoenolpyruvate carboxylase. (Os02t0244700-04)
Sequence	ACCCACACACCCACACTCTCTACCCCCAAACTTGCCCTCCAATCTATCTCCGCCGCCGCC GCCGCCTCCGCCGCGAGAGGGCGTCGCCGAGCTGCGCGGGAGGCTCGCCTCCCGCAGCAT CTGGCCGGATTCGTCGTAGTCGAGGCAGCTGTAAGCGAGAGAGAGGGAGATGGCCGCGGC CGCCGGGAAGGCGGCGATGGAGCGGCACCAGTCGATCGACGCGCAGCTGCGGCTGCTCGC GCCGGGGAAGGTATCCGAGGACGACAAGCTCGTCGAGTACGACGCCCTCCTCGTCGACCG CTTCCTCGACATCCTCCAGGACCTGCACGGCCCTCACCTCCGCGAATTCGTGCAGGAGTG CTACGAGCTGTCGGCGGAGTACGAGAACGACAGGGACGAGGCGCGGCTCGACGAGCTGGG GAGGAAGCTCACCAGCCTGCCGCCGGGGGACTCCATCGTCGTCTCCAGCTCCTTCTCGCA CATGCTCAACCTCGCCAACCTCGCCGAGGAGGTGCAGATCGCGCACCGCCGCCGGATCAA GCTCAAGCGCGGGGACTTCGCCGACGAGGCCTCCGCGCCCACCGAGTCCGACATCGAGGA GACGCTCAAGCGCCTCGTCACCCAGCTCGGCAAGTCGAGGGAGGAGGTGTTCGATGCGCT CAAGAACCAGACCGTTGACCTCGTGTTCACCGCGCATCCAACGCAGTCCGTCAGGAGGTC CCTGCTCCAGAAGCACGGGAGGATCCGGAATTGCCTGAGGCAGTTATATGCGAAAGACAT CACTGCTGATGACAAGCAGGAGCTTGATGAGGCCCTGCAGAGGGAGATTCAAGCAGCTTT CAGAACTGATGAAATCCGCAGGACTCCTCCCACTCCTCAGGATGAAATGCGCGCCGGGAT GAGTTATTTTCATGAAACTATATGGAAGGGTGTACCAAAGTTCTTGCGCCGCATTGATAC TGCTCTGAAAAATATTGGGATTAATGAGCGTCTTCCTTACAATGCTCCTCTCATCCAGTT CTCATCCTGGATGGGTGGTGACCGTGATGGAAACCCAAGAGTTACACCAGAGGTTACAAG AGATGTATGCTTGTTGGCAAGAATGATGGCTGCTAACCTGTACTTCTCTCAGATAGAAGA TCTGATGTTTGAGCTCTCTATGTGGCGCTGCAGTGATGAACTTCGAATTCGTGCAGATGA TTTGCATTGCTCCTCCAGAAAAGCTGCAAAGCACTATATAGAATTCTGGAAGCAAATTCC TCCAAATGAGCCTTATCGTGTCATACTTGGTGGTGTCAGGGATAAATTGTACTATACGCG TGAACGTACTCGCCATCTATTGACAACTGGAGTTTCTGAAATTCCAGAGGAGGCAACGTT TACTAATGTTGAAGAGTTTCTGGAGCCGCTTGAGCTGTGCTACAGATCATTATGTGCTTG TGGTGACAAACCTATAGCTGATGGAAGCCTTCTTGATTTCTTGCGTCAAGTATCAACTTT TGGGCTGGCTCTTGTAAAACTTGACATAAGGCAGGAGTCTGATCGACACACTGATGTCCT TGATGCCATAACTACATATCTTGGGATTGGATCTTACGCTGAATGGTCTGAGGAGAAACG CCAGGATTGGCTTTTGTCCGAACTAAGGGGCAAACGTCCTTTGTTTGGTCCTGATCTTCC TCAGACTGAAGAAATTGCTGATGTTTTAGGAACATTTCACGTCCTTGCTGAGCTCCCGGC AGATTGTTTTGGTGCTTACATCATCTCAATGGCAACTGCACCATCTGATGTGCTTGCTGT GGAGCTTCTACAGCGGGAGTGCCATATAAAACAGCCTCTGCGAGTTGTTCCCCTATTTGA GAAACTTGCAGATCTTGAAGCAGCTCCAGCAGCGGTGGCACGACTATTTTCAATAGACTG GTACATGAATAGGATTAATGGCAAGCAGGAGGTCATGATTGGATACTCAGACTCTGGCAA GGATGCTGGTCGTCTTTCTGCAGCATGGCAAATGTACAAAGCACAAGAGGAGCTTGTCAA GGTGGCAAAGCATTATGGTGTAAAGTTGACAATGTTCCATGGAAGAGGTGGAACAGTTGG CAGAGGAGGTGGTCCCAGTCATCTTGCCATATTATCTCAACCACCAGACACGATACATGG ATCACTTCGTGTAACAGTACAGGGCGAGGTTATTGAACACTCGTTTGGAGAGGAACACTT GTGCTTTAGAACTCTGCAGCGCTTTACTGCAGCTACTCTTGAGCATGGAATGCATCCTCC AATTTCCCCCAAACCAGAATGGCGTGCTCTAATGGATGAGATGGCTGTTGTGGCAACAAA GGAATATCGATCAATCGTCTTCAAGGAGCCACGGTTTGTTGAATACTTCCGATCGGCAAC ACCTGAGACAGAATATGGCAGGATGAACATTGGTAGCCGACCATCAAAGAGAAAGCCTAG TGGTGGCATTGAATCGCTCCGTGCAATTCCTTGGATTTTTGCTTGGACACAAACTAGGTT TCATCTTCCTGTATGGCTTGGATTTGGTGGAGCGTTCAAACATATAATGCAGAAGGATAT CAGGAACATCCATACACTGAAAGAAATGTACAATGAGTGGCCATTCTTCAGGGTCACCTT GGACTTGCTTGAGATGGTTTTCGCCAAGGGAGATCCAGGAATTGCTGCTTTATATGACAA ATTGCTTGTGGCAGGTGATCTGCAATCCTTTGGAGAGCAGCTGAGAAACAACTTTGAAGA GACAAAACAGCTACTCCTTCAGGTTGCCGGTCACAAGGATATTCTGGAAGGGGATCCTTA CCTGAAGCAGCGTCTGCGGCTGCGTGAGTCGTACATCACTACCTTGAACGTTTGCCAAGC CTACACCCTGAAGCGGATAAGGGACCCTAGCTTCGAGGTGATGTCGCAGCCGGCCTTGTC GAAGGAGTTCGTCGACAGCAACCAGCCTGCCGAGCTGGTCCAACTGAACGCTGCGAGCGA GTACGCACCTGGCCTGGAGGACACCCTCATCCTGACGATGAAGGGCATTGCTGCCGGCAT GCAGAACACAGGCTAGATTGTCCACAAGAATGCTTCCAGCAGGTGCAATCAATCAATCAT CAATAACTCCTTCCATGATGAGATGGTGAATATGTTTAACTAGTACGTTCGCCGATGCTA GTGAATTCTGGAGACTTTTTTTTGCTCGCACGTTTTCTTTTGGTTGTGTACTTGATGTAA ATGTCAAGGGGGGACTTATTTGGCTTTTGCAGCCCGATCCAAAATAAAATATGGACCAAT CATTCTACG