Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0219000-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:6644227:6645926:-1 gene:Os02g0219000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Interferon-related developmental regulator domain containing protein. (Os02t0219000-01)
Sequence

ATGGTGCTGAAGAAATCCACCGGCCGCTCTAGCGGCCACGCCTCGACGTCGTACGATGCC
TCCGCTGGCGGCGGCGCTGTGGCTGTGAGCGCGTATGAGCAGAGGATCCGTCGTAATGCC
GCCGTGCTCGAGAAGGTCGCCGTTTCGGTGCACGACAGCCTGGCGTCGACGCGGGAGGCG
GCGCTGGCGGAGCTCATCGCCGCGCTCGAGGGCTTCCTCTCCGCCGACGACGCGGAGGGT
GGGCACACCGACGAGATCCTGCGCGGCTGCTACGTCTCCATCAAGAAGAGGGCCGCCAGG
GAGGCCTGCGTGGCGCTCCGCGCCGTCGCGCTGCTCGCCGTCACGCTCGGCCCCGGCGCC
ACCTCGAAGAAGATCGCGGCGGTGGAGACGGCGGCGAACCCGCTCGGCTCCGGCGCGAAT
AAGATCATGAAGGCGACGTACCCGCTCGCCTCCCGGATTCTCGAGGCGCCACAAGCCGAC
GCGTCCCTGGTGGTCGCCGCGCTCGAGTGCCTCGCCGTCGTCGCGTTCGTCGACGTCGCC
GCGGAGAACATGGACGACACGGAGGCGTGCATGAACGCGCTGTGGGCGGTGATCTGCCCG
AGCGCGGGGCCCAAGCTCGCCAGCGCGGCGAAGGGGACGGCGAGCCCCCGCGTGCTGGCC
GCCGCCGTGTCGGCGTGGACGCTCGTCCTGACCACCACCGGCGGGTGGAACAAGAAGAAG
AAGGTGTCCCCCGCCGCGCCATGGCGAGGCGCGGCGGCTCACGCGCACCTCGTCTCCCTC
CTCGGCTCCGACAGCCGCGAGGTCCGGATGGCCGCCGGCGAGGCGCTGGCCGTCGCCATC
GAGATGAAGCTCTTCACCGAGAAAAACAATGGCGCCCTCTTCTCCAAGATGGAGGCCAGA
GCTTCCGACCTCGCCAACGACGCCGCCGGAGCGGGCGTCGACAAGACCAACTTCGTCGAG
CAGAAGGAGCTCTTCAAGGACATCACGACGTTCCTCGCCGGCGGCAAGCCCCCGGTGATC
TCGGTCCGCACGTCGTCGTCCAACTACGGCCTCCTCACGACGTCGACATGGACGGACAAT
GTCCGGCTCAACTTCCTCCGGCGATTCCTCGCCGGCGGCTTCCTGCACCACCTCCAGGGG
AAGGGTCTGATGGGCCAGGTGTTCGTCATCGACGACGACGAGGTCACCGGGAAGCTGTCG
GCGGCGAGGTCGAAGCGGAGCCTGATGAAGGACACCCGCATTGTGAAGGAGTTGAACGGC
GGCCGTGGCGGCGGCGGCGGCGCCATGGATGAGAAGAAGGAGAAGAAGCAGGAGATGATC
AAGAACTCGCTGGAGAAGAAGAGGACAGTTAAGAAGGAGCGGCTAATAGCCCATGAGCTC
AAGCATGGATCATCTGATCTATGA

Peptide Sequence

PEP ID

Os02t0219000-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:6644227:6645926:-1 gene:Os02g0219000 transcript:Os02t0219000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Interferon-related developmental regulator domain containing protein. (Os02t0219000-01)
Sequence

MVLKKSTGRSSGHASTSYDASAGGGAVAVSAYEQRIRRNAAVLEKVAVSVHDSLASTREA
ALAELIAALEGFLSADDAEGGHTDEILRGCYVSIKKRAAREACVALRAVALLAVTLGPGA
TSKKIAAVETAANPLGSGANKIMKATYPLASRILEAPQADASLVVAALECLAVVAFVDVA
AENMDDTEACMNALWAVICPSAGPKLASAAKGTASPRVLAAAVSAWTLVLTTTGGWNKKK
KVSPAAPWRGAAAHAHLVSLLGSDSREVRMAAGEALAVAIEMKLFTEKNNGALFSKMEAR
ASDLANDAAGAGVDKTNFVEQKELFKDITTFLAGGKPPVISVRTSSSNYGLLTTSTWTDN
VRLNFLRRFLAGGFLHHLQGKGLMGQVFVIDDDEVTGKLSAARSKRSLMKDTRIVKELNG
GRGGGGGAMDEKKEKKQEMIKNSLEKKRTVKKERLIAHELKHGSSDL

Transcript Sequence

Transcript ID

Os02t0219000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:6644227:6645926:-1 gene:Os02g0219000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Interferon-related developmental regulator domain containing protein. (Os02t0219000-01)
Sequence

ACGAAATCTCTCTGCGCCAGCGACGTGTTCGATCAATTGCCTCCTCAACCACCGCCTCGC
CATGGTGCTGAAGAAATCCACCGGCCGCTCTAGCGGCCACGCCTCGACGTCGTACGATGC
CTCCGCTGGCGGCGGCGCTGTGGCTGTGAGCGCGTATGAGCAGAGGATCCGTCGTAATGC
CGCCGTGCTCGAGAAGGTCGCCGTTTCGGTGCACGACAGCCTGGCGTCGACGCGGGAGGC
GGCGCTGGCGGAGCTCATCGCCGCGCTCGAGGGCTTCCTCTCCGCCGACGACGCGGAGGG
TGGGCACACCGACGAGATCCTGCGCGGCTGCTACGTCTCCATCAAGAAGAGGGCCGCCAG
GGAGGCCTGCGTGGCGCTCCGCGCCGTCGCGCTGCTCGCCGTCACGCTCGGCCCCGGCGC
CACCTCGAAGAAGATCGCGGCGGTGGAGACGGCGGCGAACCCGCTCGGCTCCGGCGCGAA
TAAGATCATGAAGGCGACGTACCCGCTCGCCTCCCGGATTCTCGAGGCGCCACAAGCCGA
CGCGTCCCTGGTGGTCGCCGCGCTCGAGTGCCTCGCCGTCGTCGCGTTCGTCGACGTCGC
CGCGGAGAACATGGACGACACGGAGGCGTGCATGAACGCGCTGTGGGCGGTGATCTGCCC
GAGCGCGGGGCCCAAGCTCGCCAGCGCGGCGAAGGGGACGGCGAGCCCCCGCGTGCTGGC
CGCCGCCGTGTCGGCGTGGACGCTCGTCCTGACCACCACCGGCGGGTGGAACAAGAAGAA
GAAGGTGTCCCCCGCCGCGCCATGGCGAGGCGCGGCGGCTCACGCGCACCTCGTCTCCCT
CCTCGGCTCCGACAGCCGCGAGGTCCGGATGGCCGCCGGCGAGGCGCTGGCCGTCGCCAT
CGAGATGAAGCTCTTCACCGAGAAAAACAATGGCGCCCTCTTCTCCAAGATGGAGGCCAG
AGCTTCCGACCTCGCCAACGACGCCGCCGGAGCGGGCGTCGACAAGACCAACTTCGTCGA
GCAGAAGGAGCTCTTCAAGGACATCACGACGTTCCTCGCCGGCGGCAAGCCCCCGGTGAT
CTCGGTCCGCACGTCGTCGTCCAACTACGGCCTCCTCACGACGTCGACATGGACGGACAA
TGTCCGGCTCAACTTCCTCCGGCGATTCCTCGCCGGCGGCTTCCTGCACCACCTCCAGGG
GAAGGGTCTGATGGGCCAGGTGTTCGTCATCGACGACGACGAGGTCACCGGGAAGCTGTC
GGCGGCGAGGTCGAAGCGGAGCCTGATGAAGGACACCCGCATTGTGAAGGAGTTGAACGG
CGGCCGTGGCGGCGGCGGCGGCGCCATGGATGAGAAGAAGGAGAAGAAGCAGGAGATGAT
CAAGAACTCGCTGGAGAAGAAGAGGACAGTTAAGAAGGAGCGGCTAATAGCCCATGAGCT
CAAGCATGGATCATCTGATCTATGAAACAAGGAAAGGAATTATGGATAATTTAATTAGGG
TTGCATTTCATATATATGATTTATCTTTTTTAGGGTTTATAGGGCAGTCTTTTAGGGTTA
ATTACTAGATGCAACGTACTGCTTGGTTTCCCTTTCAATATCACTATGTTATTTTCGTAT
TATTGTCATGTTCATTCATGGTCCACAATTGTACTTGGGAGTTACATTCACCACGATTCA
ATCACGCTAATTAGATCACC