Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0217500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:6568146:6572499:1 gene:Os02g0217500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pre-mRNA cleavage complex II Clp1 family protein. (Os02t0217500-01)
Sequence

ATGGCCGCCGCGGGCGGGGCCGCGCAGCCGCCGCGGCAGTACAAGCTGGCGCCGCAGAGC
GAGCTGCGGGTGGAGGTGCCCCCCGACGCGCCCGTCCGCGTCCGCCTCGTCGCCGGCACG
GCGGAGGTCTTCGGCACCGAGCTCCCCCCCGAGGGCTGGGTCCCCGTCCCGCCCCGCTCC
AAGATCGCCATTTTCACCTGGCACGGCGCGACGGTGGAGCTGGACGGGGTCAGCGAGAGC
GAGTACACGTCCGACGAGACACCGATGGTGGTTTATGTGAACACCCACGCGATCCTTGAC
GCGAGGAGGGCGAGGGCGAGGGCCGCCGCGGCTCAGGGTGCCCTGCCGGAGTCCTCGCAG
GGACCCAGAGTGATCATTGTGGGGCCAAGTGATTCTGGAAAAAGTACTTTGTGCAAAATG
CTCCTTAGCTGGGCTGCCAAGCAGGGCTGGAAGCCTACATATGTGGATTTAGATATTGGC
CAAGGTTCGATAACCATACCTGGATGTATTTCGGCAACACCCATTGAGAAGCCTATAGAT
ATAGTTGATGGGATTCCCTTGGAGATGCCGCTTGCATACTTTTACGGCCATCCAAGCCCA
AGTGTTAGTCCAGATGTTTACAGAGCTCTTATGAAGGAGCTAGCTCAGACATTGGATAAA
CAATTCTCTGGAAATTCTGAATCTAGGGCAGCAGGAATGATTATCAATACTATGGGGTGG
GTTGAAAACCTTGGTTTAGAGTTACTTCACAATTCAATTGAGATTTTCAAGGCTAATGTA
ATATTGGTATTGGGACAGGAGAAACTATGGAAGATGCTAAAAGATGCAGCAAAAAATAAG
CCCAACATTGATGTTGTAAAACTTCATAAATCAGAAGGTGTTGTTCCGAGAAATCCAAAG
TACCGTCAAAAGACTAGAAGCTTCCGTATCAAGGAGTACTTTTATGGCATTGCGAATGAT
CTAGCACCACACTCAAATGTTGTTAACTTCAGTGATGTATCTGTTTACAAGATTGGCACT
CATCAAGCTCCTAAGTCTGCACTACCGATTGGTGCAGAGCCTGTGGCAGACCCTACTCGA
CTTGTTGCTGTTAACATCAGCACAGATATGGTCCACACCGTGCTTGCTGTTTCATATGCT
AAGGAACCTGATGAAATAGTTTCCAGCAATGTTGCCGGATTCATCCACGTGACAGATGTT
GACATCCAAAGGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAG
CTGTTAATTGCGAGCTCGTTAACGTGGTACGAGGCTTGA

Peptide Sequence

PEP ID

Os02t0217500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:6568146:6572499:1 gene:Os02g0217500 transcript:Os02t0217500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pre-mRNA cleavage complex II Clp1 family protein. (Os02t0217500-01)
Sequence

MAAAGGAAQPPRQYKLAPQSELRVEVPPDAPVRVRLVAGTAEVFGTELPPEGWVPVPPRS
KIAIFTWHGATVELDGVSESEYTSDETPMVVYVNTHAILDARRARARAAAAQGALPESSQ
GPRVIIVGPSDSGKSTLCKMLLSWAAKQGWKPTYVDLDIGQGSITIPGCISATPIEKPID
IVDGIPLEMPLAYFYGHPSPSVSPDVYRALMKELAQTLDKQFSGNSESRAAGMIINTMGW
VENLGLELLHNSIEIFKANVILVLGQEKLWKMLKDAAKNKPNIDVVKLHKSEGVVPRNPK
YRQKTRSFRIKEYFYGIANDLAPHSNVVNFSDVSVYKIGTHQAPKSALPIGAEPVADPTR
LVAVNISTDMVHTVLAVSYAKEPDEIVSSNVAGFIHVTDVDIQRKKLTYIAPCPGDLPSK
LLIASSLTWYEA

Transcript Sequence

Transcript ID

Os02t0217500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:6568146:6572499:1 gene:Os02g0217500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pre-mRNA cleavage complex II Clp1 family protein. (Os02t0217500-01)
Sequence

AAAATCTCCAAAACCGCTTCGGCTTCCTCTCTCCCCTCACGGCGGCCGTCGCTTCGTTCG
CCGATTAGCCGGCGCCGCCGCCGCCGCCGCCGGTAGAGAACCCACCCCCTCCCCGCATGG
CCGCCGCGGGCGGGGCCGCGCAGCCGCCGCGGCAGTACAAGCTGGCGCCGCAGAGCGAGC
TGCGGGTGGAGGTGCCCCCCGACGCGCCCGTCCGCGTCCGCCTCGTCGCCGGCACGGCGG
AGGTCTTCGGCACCGAGCTCCCCCCCGAGGGCTGGGTCCCCGTCCCGCCCCGCTCCAAGA
TCGCCATTTTCACCTGGCACGGCGCGACGGTGGAGCTGGACGGGGTCAGCGAGAGCGAGT
ACACGTCCGACGAGACACCGATGGTGGTTTATGTGAACACCCACGCGATCCTTGACGCGA
GGAGGGCGAGGGCGAGGGCCGCCGCGGCTCAGGGTGCCCTGCCGGAGTCCTCGCAGGGAC
CCAGAGTGATCATTGTGGGGCCAAGTGATTCTGGAAAAAGTACTTTGTGCAAAATGCTCC
TTAGCTGGGCTGCCAAGCAGGGCTGGAAGCCTACATATGTGGATTTAGATATTGGCCAAG
GTTCGATAACCATACCTGGATGTATTTCGGCAACACCCATTGAGAAGCCTATAGATATAG
TTGATGGGATTCCCTTGGAGATGCCGCTTGCATACTTTTACGGCCATCCAAGCCCAAGTG
TTAGTCCAGATGTTTACAGAGCTCTTATGAAGGAGCTAGCTCAGACATTGGATAAACAAT
TCTCTGGAAATTCTGAATCTAGGGCAGCAGGAATGATTATCAATACTATGGGGTGGGTTG
AAAACCTTGGTTTAGAGTTACTTCACAATTCAATTGAGATTTTCAAGGCTAATGTAATAT
TGGTATTGGGACAGGAGAAACTATGGAAGATGCTAAAAGATGCAGCAAAAAATAAGCCCA
ACATTGATGTTGTAAAACTTCATAAATCAGAAGGTGTTGTTCCGAGAAATCCAAAGTACC
GTCAAAAGACTAGAAGCTTCCGTATCAAGGAGTACTTTTATGGCATTGCGAATGATCTAG
CACCACACTCAAATGTTGTTAACTTCAGTGATGTATCTGTTTACAAGATTGGCACTCATC
AAGCTCCTAAGTCTGCACTACCGATTGGTGCAGAGCCTGTGGCAGACCCTACTCGACTTG
TTGCTGTTAACATCAGCACAGATATGGTCCACACCGTGCTTGCTGTTTCATATGCTAAGG
AACCTGATGAAATAGTTTCCAGCAATGTTGCCGGATTCATCCACGTGACAGATGTTGACA
TCCAAAGGAAGAAGCTCACATACATTGCACCATGCCCAGGGGACCTGCCAAGTAAGCTGT
TAATTGCGAGCTCGTTAACGTGGTACGAGGCTTGATCAGCTCATGGCAGAACGATCAACG
ATGTAGCTAGGTGGTCAGTTAAATTAATCAGATGGATGTAACACAGATGTATCCCTTGTC
CTATCTCCGGGTGTACGTTGTAAACTTGCAAGCTTTTTAGTAAACTCAATGCACTGCTAA
CTAAAACTTATAACAGCAAATTTCACTCATTTCTCT