Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0214900-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:6424577:6430587:-1 gene:Os02g0214900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS-1 TYPE HISTONE DEACETYLASE 3 description:Class-I type histone deacetylase, Reproductive development, Seed morphology (Os02t0214900-01);Similar to Histone deacetylase. (Os02t0214900-02)
Sequence	ATGGACCCCTCGTCGGCGGGCGCGGGCGGCAACTCGCTGGCGTCGGCGTCGTGCGGCGAC GCGCAGAAGCGGCGGGTGTGCTACTTCTACGACCCGGAGGTGGGCAACTACTACTACGGT CAGGGCCACCCGATGAAGCCCCACCGGGTGAGGATGACCCACGCGCTGCTCGCCCACTAC GGCCTCCTCGCCCCGGCCAAGATGGAGGTGCTCCGCCCGCTCCCCGCCCGCGGCATCGAC CTCTGCCGCTTCCACTCCGACGACTACGTCGCCTTCCTCCGCGCCGTCACCCCGGAGACC CAGCTCGGCCAGGTCCGCGCCCTCCGCCGCTTCAACATCGGCCCGGACTGCCCCGTCTTC GACGGCCTCTACGCCTACTGCCAGACCTACGCGGGGGCCTCCGTCGGCGCCGCCGTCAAG CTCAACCACGGCACCCACGACATCGCCATCAACTGGTCCGGCGGGTTGCACCACGCCAAG AAGTCCGAGGCCTCCGGCTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTC CTCAAGCTCCATGAGCGAGTTCTGTATATTGATATTGATATCCATCATGGAGATGGAGTT GAGGAGGCATTCTACACAACAAACAGGGTTATGACAGTCTCATTTCACAAGTTTGGGGAT TATTTCCCGGGAACAGGGGATATCCGCGACATTGGGTATTCAGAAGGGAAGTATTACTGC CTGAATGTCCCGCTGGATGATGGAATTGATGATGACAGCTACCAGTCCATCTTCAAGCCG ATCATCAGCAAAGTCATGGAGATGTATCGTCCTGGTGCAGTCGTGCTTCAGTGCGGCGCT GATTCGTTGTCCGGTGATAGGTTGGGCTGTTTCAATCTCTCAGGGAAAGGTCATGCTGAA TGTGTTAAGTTCATGAGGTCTTTCAATGTTCCGTTGCTTCTTCTTGGTGGTGGTGGATAT ACCATAAGAAATGTTGCACGCTGCTGGTGTTACGAGACAGGAGTTGCACTTGGTGAAGAG CTACAGGAGAAGTTGCCTTACAATGAGTATTATGAATATTTTGGTCCAGAATACAGTCTT TACGTTGCAGCAAGTAACATGGAGAACAGAAATACAAACAAGCAACTGGAGGAAATAAAA TGCAATATTCTGGACAATCTTTCAAAACTTCAACATGCACCTAGCGTCCAATTTCAAGAG CGAATTCCTGAAACAAAGCTACCTGAGCCAGATGAAGATCAAGAGGATCCAGATGAAAGG CACGACCCTGACTCTGATATGGTGTTGGATGATCACAAACCTACGGGACACTCAGCAAGA AGCCTTATTCACAACATCGGAGTAAAGAGAGAAATTACTGAAACAGAGACCAAAGATCAG CATGGTAAGAGATTAACAACCGAACATAAAGGACCAGAACCGATGGCAGAGGATCTTGGT TCCTCCAAGCAAGCTCCTACTGCGGATGCAAATGCGGTGGCCGTCAACGCGCCAGGCAAC GCCAGGAATGAACCGGGAAGCTCACCCAAATGA

Peptide Sequence

PEP ID	Os02t0214900-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:6424577:6430587:-1 gene:Os02g0214900 transcript:Os02t0214900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS-1 TYPE HISTONE DEACETYLASE 3 description:Class-I type histone deacetylase, Reproductive development, Seed morphology (Os02t0214900-01);Similar to Histone deacetylase. (Os02t0214900-02)
Sequence	MDPSSAGAGGNSLASASCGDAQKRRVCYFYDPEVGNYYYGQGHPMKPHRVRMTHALLAHY GLLAPAKMEVLRPLPARGIDLCRFHSDDYVAFLRAVTPETQLGQVRALRRFNIGPDCPVF DGLYAYCQTYAGASVGAAVKLNHGTHDIAINWSGGLHHAKKSEASGFCYVNDIVLAILEL LKLHERVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFGDYFPGTGDIRDIGYSEGKYYC LNVPLDDGIDDDSYQSIFKPIISKVMEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHAE CVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGEELQEKLPYNEYYEYFGPEYSL YVAASNMENRNTNKQLEEIKCNILDNLSKLQHAPSVQFQERIPETKLPEPDEDQEDPDER HDPDSDMVLDDHKPTGHSARSLIHNIGVKREITETETKDQHGKRLTTEHKGPEPMAEDLG SSKQAPTADANAVAVNAPGNARNEPGSSPK

Transcript Sequence

Transcript ID	Os02t0214900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:6424577:6430587:-1 gene:Os02g0214900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS-1 TYPE HISTONE DEACETYLASE 3 description:Class-I type histone deacetylase, Reproductive development, Seed morphology (Os02t0214900-01);Similar to Histone deacetylase. (Os02t0214900-02)
Sequence	CAGCAAGCACCCGACCACAACACACACGCGAGCTCCTCGAGAGAGGAAAAAAACCCAACC CCGAATTCGGCGGCGGCGGCGGAGGCGGAGGCGGCGATGGACCCCTCGTCGGCGGGCGCG GGCGGCAACTCGCTGGCGTCGGCGTCGTGCGGCGACGCGCAGAAGCGGCGGGTGTGCTAC TTCTACGACCCGGAGGTGGGCAACTACTACTACGGTCAGGGCCACCCGATGAAGCCCCAC CGGGTGAGGATGACCCACGCGCTGCTCGCCCACTACGGCCTCCTCGCCCCGGCCAAGATG GAGGTGCTCCGCCCGCTCCCCGCCCGCGGCATCGACCTCTGCCGCTTCCACTCCGACGAC TACGTCGCCTTCCTCCGCGCCGTCACCCCGGAGACCCAGCTCGGCCAGGTCCGCGCCCTC CGCCGCTTCAACATCGGCCCGGACTGCCCCGTCTTCGACGGCCTCTACGCCTACTGCCAG ACCTACGCGGGGGCCTCCGTCGGCGCCGCCGTCAAGCTCAACCACGGCACCCACGACATC GCCATCAACTGGTCCGGCGGGTTGCACCACGCCAAGAAGTCCGAGGCCTCCGGCTTCTGC TACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAGCTCCATGAGCGAGTTCTG TATATTGATATTGATATCCATCATGGAGATGGAGTTGAGGAGGCATTCTACACAACAAAC AGGGTTATGACAGTCTCATTTCACAAGTTTGGGGATTATTTCCCGGGAACAGGGGATATC CGCGACATTGGGTATTCAGAAGGGAAGTATTACTGCCTGAATGTCCCGCTGGATGATGGA ATTGATGATGACAGCTACCAGTCCATCTTCAAGCCGATCATCAGCAAAGTCATGGAGATG TATCGTCCTGGTGCAGTCGTGCTTCAGTGCGGCGCTGATTCGTTGTCCGGTGATAGGTTG GGCTGTTTCAATCTCTCAGGGAAAGGTCATGCTGAATGTGTTAAGTTCATGAGGTCTTTC AATGTTCCGTTGCTTCTTCTTGGTGGTGGTGGATATACCATAAGAAATGTTGCACGCTGC TGGTGTTACGAGACAGGAGTTGCACTTGGTGAAGAGCTACAGGAGAAGTTGCCTTACAAT GAGTATTATGAATATTTTGGTCCAGAATACAGTCTTTACGTTGCAGCAAGTAACATGGAG AACAGAAATACAAACAAGCAACTGGAGGAAATAAAATGCAATATTCTGGACAATCTTTCA AAACTTCAACATGCACCTAGCGTCCAATTTCAAGAGCGAATTCCTGAAACAAAGCTACCT GAGCCAGATGAAGATCAAGAGGATCCAGATGAAAGGCACGACCCTGACTCTGATATGGTG TTGGATGATCACAAACCTACGGGACACTCAGCAAGAAGCCTTATTCACAACATCGGAGTA AAGAGAGAAATTACTGAAACAGAGACCAAAGATCAGCATGGTAAGAGATTAACAACCGAA CATAAAGGACCAGAACCGATGGCAGAGGATCTTGGTTCCTCCAAGCAAGCTCCTACTGCG GATGCAAATGCGGTGGCCGTCAACGCGCCAGGCAACGCCAGGAATGAACCGGGAAGCTCA CCCAAATGACCGAACCCACCAGCAGCTATGCACCAGAAGACCATGATTTAGCTACCTTCA GGACACGAGCTCTCTGTCAAGGTTTCCTGCATGCTCTTAAGTTGGCAGAAACTGGAGTTG ATCTGTATACTGCATCTTGACATTTCAAACTTAAAAATCGACACAAATCAAGAGCAAACA CTGTTTGATTGTTTCTTCTGTAGGAGTTTACCATTGTTTCTTTTGTTGAAGAAGTCCATA ATGTTCAGGCAATACTGGACGTGGAGGCATTAGTCTGACTGACCAATGTAGTACAAAACA AAACATGTAACGTGAAGCAAGTTAAAATGTACAGTCTGTTAGACTGTTAGATGGAGATAT GGAATTTCAGGCGAAAA