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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0214500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:6404019:6405861:1 gene:Os02g0214500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:THERMOSENSITIVE MALE STERILITY 5 description:No apical meristem (NAM) protein domain containing protein. (Os02t0214500-01)
Sequence

ATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCG
ACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGCAGCCATGCGTT
ACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATG
GCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAG
GCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTC
GTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTC
GGCCACCACCAACCATCGGGCAGCAACAACAACAACAAAACATCATGGATCATGCATGAG
TACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCGTCTT
CCCACTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCTCCAACAAGGACCTGCCT
AAACCACCCTTCATCCACAACAGCTTGTTGCAGTTCTCTTCAGTGGGGTTGAATGGTGAT
GGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATGGAGTATCCTAATGTT
GGCATTGGTAATGTTGATGATGCTGCTGCTGGTACTGATGATCCGGGTGACCTTGATGAG
GAGATTGATGATAGCATGCAAAGAAACCATGGTGGCTAG

Peptide Sequence

PEP ID

Os02t0214500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:6404019:6405861:1 gene:Os02g0214500 transcript:Os02t0214500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:THERMOSENSITIVE MALE STERILITY 5 description:No apical meristem (NAM) protein domain containing protein. (Os02t0214500-01)
Sequence

MAMTPQLAFSRMPPGFRFQPTDEQLVVDYLQRRTAAQPCVTPDITDIDVYNVDPWQLPAM
AMYGSDHDRYFFTMAAREAQARRTTPSGFWKPTGTKKTIFVVAGGHEVPTAVKRRFVFYL
GHHQPSGSNNNNKTSWIMHEYRLMNSPRAAVPSSSSVNRLPTDDLTEEMVLCRISNKDLP
KPPFIHNSLLQFSSVGLNGDGYNYLILDHLEPPAMEYPNVGIGNVDDAAAGTDDPGDLDE
EIDDSMQRNHGG

Transcript Sequence

Transcript ID

Os02t0214500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:6404019:6405861:1 gene:Os02g0214500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:THERMOSENSITIVE MALE STERILITY 5 description:No apical meristem (NAM) protein domain containing protein. (Os02t0214500-01)
Sequence

ATCACAAAACACATAAAACTATATCATCATCTTCCATAGCTGTACACATCCTATATTTTC
ATTCATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCA
GCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGCAGCCATG
CGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGC
CATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGC
GCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGAT
CTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTA
CCTCGGCCACCACCAACCATCGGGCAGCAACAACAACAACAAAACATCATGGATCATGCA
TGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCG
TCTTCCCACTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCTCCAACAAGGACCT
GCCTAAACCACCCTTCATCCACAACAGCTTGTTGCAGTTCTCTTCAGTGGGGTTGAATGG
TGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATGGAGTATCCTAA
TGTTGGCATTGGTAATGTTGATGATGCTGCTGCTGGTACTGATGATCCGGGTGACCTTGA
TGAGGAGATTGATGATAGCATGCAAAGAAACCATGGTGGCTAGAATTAACCAGTAGCATC
ATGAGTGAATGGTTTTGCGGGAGATTTGAGTTAAATATCAGATAATAAAATAATAATACA
AAGAATAAAAAGAAAAACAAACCTGTATAGTTAGCAGGTTTTGATTCATTTCGTTGAACT
TTGTGTGCTTGTTAGCTAGCCTATATACCAAACATGCCTTGGCGAGGCTTTCTATTTGTA
TATAGCTTTTTTTCTTTTTTCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAA
CATTATGCAATTTATGTAACATATTGTCTAT