Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0205500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:5930298:5933077:-1 gene:Os02g0205500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Fatty acid elongase 1. (Os02t0205500-01)
Sequence

ATGGACAACAACGCCGAGGCAGCGAATGACGGCGCCGGCGCCGGCGAGCGGCGGCGGCTG
CCGGACTTCCAGCAGTCGGTGCGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATC
ACCAACGGCGTGTACCTCCTCCTGACGCCGCTCATCGCCCTCGTCGCCGTCCACCTCTCC
ACGCTCACCGCCGGCGACGTCGCCGGCCTCTGGTCGCACCTCCGCTTCAACCTCGTCTCC
GTCGTCGCCTGCACCACCCTCCTCGTCTTCCTCTCCACCGTCCGCTTCCTCACCCGCCCG
CGCCCCGTCTACCTCGTCGACTTCGCCTGCTACAAGCCGCCGCCGGAGCGCCGGTGCAGC
CGGGACGCCTTCATGCGGTGCTCCAGGCTCGCCGGATGCTTCACCGCCGCCAGCCTCGAC
TTCCAGCGCAGGATCGTCGAGCGCTCGGGCCTCGGCGACGACACCTACCTCCCCGCCGCC
GTGCTCCGGGAGCCGCCCAACCCGAGCATGGCGGAGGCGCGGCGCGAGGCCGAGGCCGTC
ATGTTCGGCGCCGTCGACGACCTCCTCGCCAAGACCGGCGTGAGCGCCAAGGAGATCGGC
GTCCTCGTCGTCAACTGCAGCCTCTTCAACCCGACGCCGTCGCTGTCCGCCATGGTGGTG
AACCACTACAAGCTCCGCGGCAACATCGTCAGCTACAACCTCGGCGGCATGGGCTGCAGC
GCCGGCCTCCTCGCCATCGATCTCGCCAAGGACCTCCTCCAGGTGCACCGAAACTCGTAC
GCGCTCGTCATCAGCATGGAGAACATCACGCTCAACTGGTACTCCGGCAACGACCGGTCG
ATGCTGGTGTCCAACTGCCTCTTCCGGATGGGCGGCGCGGCGATCCTGCTGTCGAACAGG
TGGTCGGAGAGGCGCCGGTCCAAGTACGAGCTGGTGCACACGGTGCGGACGCACAAGGGC
GGCGACGACAAGTGCTTCGGTTGCGTCACCCAGGAGGAGGACGGCGAGGGCAATGTCGGC
GTCGCGCTGTCCAAGGACCTCATGGCGGTCGCCGGCGACGCGCTGAAGACGAACATCACG
ACGCTGGGTCCCCTCGTCCTGCCGCTGTCGGAGCAGCTCCTGTTCATGGCGACGCTGGTC
GCCAAGAAGCTGCTCAAGATGAAGAACGTCAAGCCCTACATCCCCGACTTCAAGCTGGCG
TTCGAGCACTTCTGCGTGCACGCCGGCGGCAGGGCGGTGCTGGACGAGATCGAGAAGAAC
TTGTCGCTGGGGGAGTGGCAGATGGAGCCGTCACGGATGACGCTGTACAGGTTTGGGAAC
ACGTCGAGCAGCTCGCTGTGGTACGAGCTGGCGTACAGCGAGGCGAAGGGGAGGGTGAGG
AGGAGGGACAGGGTGTGGCAGATCGCGTTCGGGTCCGGGTTCAAGTGCAACAGCGCGGTG
TGGAGGGCGCTCCGGTCGGTGGACCCGGAGGAGGAGGCGCTGAAGAAGAACCCGTGGATG
GATGAGATCGATCGGTTCCCCGTGGTTGTTCCCAGGGTGTCCAGGATTTCAACCGACTGA

Peptide Sequence

PEP ID

Os02t0205500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:5930298:5933077:-1 gene:Os02g0205500 transcript:Os02t0205500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Fatty acid elongase 1. (Os02t0205500-01)
Sequence

MDNNAEAANDGAGAGERRRLPDFQQSVRLKYVKLGYHYLITNGVYLLLTPLIALVAVHLS
TLTAGDVAGLWSHLRFNLVSVVACTTLLVFLSTVRFLTRPRPVYLVDFACYKPPPERRCS
RDAFMRCSRLAGCFTAASLDFQRRIVERSGLGDDTYLPAAVLREPPNPSMAEARREAEAV
MFGAVDDLLAKTGVSAKEIGVLVVNCSLFNPTPSLSAMVVNHYKLRGNIVSYNLGGMGCS
AGLLAIDLAKDLLQVHRNSYALVISMENITLNWYSGNDRSMLVSNCLFRMGGAAILLSNR
WSERRRSKYELVHTVRTHKGGDDKCFGCVTQEEDGEGNVGVALSKDLMAVAGDALKTNIT
TLGPLVLPLSEQLLFMATLVAKKLLKMKNVKPYIPDFKLAFEHFCVHAGGRAVLDEIEKN
LSLGEWQMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRVRRRDRVWQIAFGSGFKCNSAV
WRALRSVDPEEEALKKNPWMDEIDRFPVVVPRVSRISTD

Transcript Sequence

Transcript ID

Os02t0205500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:5930298:5933077:-1 gene:Os02g0205500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Fatty acid elongase 1. (Os02t0205500-01)
Sequence

ACGTGCAACCGCTCGCGAAAAGCCAGTGCGACACAGCGGCGGCGGCGAGATCGTCTGCGT
CTTCTTCGCCGTCGTCGTGGTCTCCGTTCTGCTTCGTTTTTTTACCGGTCTCCATGGACA
ACAACGCCGAGGCAGCGAATGACGGCGCCGGCGCCGGCGAGCGGCGGCGGCTGCCGGACT
TCCAGCAGTCGGTGCGGCTCAAGTACGTGAAGCTGGGGTACCACTACCTCATCACCAACG
GCGTGTACCTCCTCCTGACGCCGCTCATCGCCCTCGTCGCCGTCCACCTCTCCACGCTCA
CCGCCGGCGACGTCGCCGGCCTCTGGTCGCACCTCCGCTTCAACCTCGTCTCCGTCGTCG
CCTGCACCACCCTCCTCGTCTTCCTCTCCACCGTCCGCTTCCTCACCCGCCCGCGCCCCG
TCTACCTCGTCGACTTCGCCTGCTACAAGCCGCCGCCGGAGCGCCGGTGCAGCCGGGACG
CCTTCATGCGGTGCTCCAGGCTCGCCGGATGCTTCACCGCCGCCAGCCTCGACTTCCAGC
GCAGGATCGTCGAGCGCTCGGGCCTCGGCGACGACACCTACCTCCCCGCCGCCGTGCTCC
GGGAGCCGCCCAACCCGAGCATGGCGGAGGCGCGGCGCGAGGCCGAGGCCGTCATGTTCG
GCGCCGTCGACGACCTCCTCGCCAAGACCGGCGTGAGCGCCAAGGAGATCGGCGTCCTCG
TCGTCAACTGCAGCCTCTTCAACCCGACGCCGTCGCTGTCCGCCATGGTGGTGAACCACT
ACAAGCTCCGCGGCAACATCGTCAGCTACAACCTCGGCGGCATGGGCTGCAGCGCCGGCC
TCCTCGCCATCGATCTCGCCAAGGACCTCCTCCAGGTGCACCGAAACTCGTACGCGCTCG
TCATCAGCATGGAGAACATCACGCTCAACTGGTACTCCGGCAACGACCGGTCGATGCTGG
TGTCCAACTGCCTCTTCCGGATGGGCGGCGCGGCGATCCTGCTGTCGAACAGGTGGTCGG
AGAGGCGCCGGTCCAAGTACGAGCTGGTGCACACGGTGCGGACGCACAAGGGCGGCGACG
ACAAGTGCTTCGGTTGCGTCACCCAGGAGGAGGACGGCGAGGGCAATGTCGGCGTCGCGC
TGTCCAAGGACCTCATGGCGGTCGCCGGCGACGCGCTGAAGACGAACATCACGACGCTGG
GTCCCCTCGTCCTGCCGCTGTCGGAGCAGCTCCTGTTCATGGCGACGCTGGTCGCCAAGA
AGCTGCTCAAGATGAAGAACGTCAAGCCCTACATCCCCGACTTCAAGCTGGCGTTCGAGC
ACTTCTGCGTGCACGCCGGCGGCAGGGCGGTGCTGGACGAGATCGAGAAGAACTTGTCGC
TGGGGGAGTGGCAGATGGAGCCGTCACGGATGACGCTGTACAGGTTTGGGAACACGTCGA
GCAGCTCGCTGTGGTACGAGCTGGCGTACAGCGAGGCGAAGGGGAGGGTGAGGAGGAGGG
ACAGGGTGTGGCAGATCGCGTTCGGGTCCGGGTTCAAGTGCAACAGCGCGGTGTGGAGGG
CGCTCCGGTCGGTGGACCCGGAGGAGGAGGCGCTGAAGAAGAACCCGTGGATGGATGAGA
TCGATCGGTTCCCCGTGGTTGTTCCCAGGGTGTCCAGGATTTCAACCGACTGAGCTTGAA
TAGATTAATTTGGTGCTCCTTTGGAATTGGCACTTTTGTTAGGTGGATGCACCAAGGTGA
TTACGGATTGTTGGGTTTTGTGGTACTTGCAAATTGTTTTTGATCTTTTAATCTATTGTT
AGGGTAGGAACAGGAGTGTGTTGTTGTGTCTGTCTTGTGGTTGTACGTTCACCACTTCAG
CTTGGGTGTGTGATCAGTCCTCCAAATTTTCTGATTATGGACCAAATTTGGCGAATTTTG
ATTGGACG