Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0199800-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:5587185:5593645:-1 gene:Os02g0199800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA54 description:Similar to No pollen. (Os02t0199800-01)
Sequence

ATGGCGAGATCGGTGGGCGGCGGCAGCGGCGGTGGCGGGGAGCGGCCGGGGAGCGCGCCG
ATGCGGCTGTGCGTGCACGTGCTGGAGGCGCGGGGGCTCCAGGCGGCGTACCTCACCGGG
CACAGCGACCCCTACGTGCGGCTGCAGATGGGGAGGCGGAGGGCGAAGACGACGGTGGTG
AAGAGGTGCCTCAGCCCCCTGTGGGACGAGGAGTTCGGGTTCGCCGTCGGCGACGCCGAG
GAGGAGCTCGTCGTGTCCGTGCTCAACGAGGAGGGGTACTTCGGCGGGGGGTTCCTGGGG
CGGGTCAAGGTGCCCCTCTCGACCGTCATGGCGGCGGACGGCCTCTCCCTCGGCACGGCG
TGGTACCACCTCCACTCCAAGGGCGGCAGGTTCAGGAAGAAACGGCGCGTTGCGGGTGAA
ATTCGCTTGAGGATTTACTTATCTAGGACAGCCATTTGCGACGAACCGAGAAACATGCCA
ATGCAACTTATCAATGATACACCATGCAGCTCAATGAGGTCAGTTGGAACCACTGCCTCG
TCCTTATCAGCGAGGTCAGTAGGAACCACTGCCTCGTCCTTATCAGCGAGGTCAGTTGGA
ACCACTGCCTCGTCCTTATCGGCTTCTGTTAGTAGCCTTGATCTGTCAGCCTGTCCTAGC
ATGGAAAGGGCATCCTGCAGCAGTATGGATAAGTTGAGCCAGGGCATCATGGATCAGCAA
GGCCGTCGAAGCCCAGGGCAACTGTCTTGTATCAGCACAGAAAGATCTATTCTTTTGGAG
CCCGAGGAAGATGACAATGATGCCACCACCAATGCATCATCAGTAGTGGAAGTCATGTCT
CGCTACTTTTGTCGGAAACCTGTTGACGCCGCACCTTCTGCCACATCAGATCATGAGCAG
TTTCAAGATACACAAATGAACTCTGAATCTTGTGAAAATGGTGATAATGGGGCGCTCCCT
GAAACTAGTTTAAATGAGCTAATGAAATCCCTGGAGTCTAAAGATAAAGGTTCTGAAATG
CCAGAAAACTTGCGTGGTGGTATACTCGTGGACCAATCTTATGTTCTTCAACCAACTGAA
ATGAATTCCATGTTGTTTTCTGCACATTCAGATTTCTGGCCAGCAGTTGCAGAAGTTCAA
GGGTTAAGCGGATTCCAAACTGACCCCTGGAAACTTGTAAGCAATGATTGTTTGAAAAGA
ACTTTAAGTTATACAAAAGCTGCAAGCAAATTAGTTAAAGCTGTAAAAATTACTGAAGAG
CAGACATACTTAAAGGCAGCTGGAAATTCTTTTGCTGTTCTTTCCAGTGTTAGCAGTCCT
GAGGTTCCCTGTGGTAATTGTTTCAAGGTGGAGATTCTGTACTGTATAACACCAGGTCCA
CAGTTGCCATCTAAAGAACAAACATCACATCTTACTATAAGTTGGCGTCTGAACTTTGTC
CAGAGTACAATGTTGAAAGGGATGATCGAGAGCGGGACAAAACAAGGACTCCGAGAGGGA
TATGCACAGTTTACTGAAGTACTGTCCCAGAAGACCAAAGTGATTGCGCCTGATGATTCT
AACTTAAGCAAAGACGAGATTTTAAGCTCATTGCAGACACAGGAAGAATCAATTTGGAAA
CTGGCTGCCCGCTTCCTTGGAAACTTTGCATTCATATTCTCTCTCTGTATAGCACTGTAT
GCCACTGCACATCTTCGTCTAGTTAAGCCAAATATGGTGCATGGGCTCGAATATTTTGGT
ATTGATCTCCCAGATTCAATTTGGGAGGTTGTATTTTGTGCCATTTTGATAATTCAGGGG
CAGAATATCTTCAAATCAGGACGGCGGTTTTTGTATGCATGGAAACAAAGAGGTAGTGAT
CATGGGGTGAAAGCTCATGGTGATGGTTGGTTGCTGACTGTTGCACTTATTGAGGGAAGC
GGTGTAGTAGGTTCAGGTACACCTGGCTTGCCTGATCCTTATGTTGTTTTTACCTGTAAT
GGAAAGAGGAAAACAAGCTCAGTTAAATTCCAGACATCCGAACCGAAATGGAACGAGATA
TTTGAATTCAATGCAATGGATGATCCTCCATCAAGGTTGGAAGTAGTTGTGCATGATTCA
GAGGGACCACATAATAAAATTCCTATTGGTCAAACAGAAGTGAACTTTTTGAAAAACAAT
TTGTCAGATTTGGGTGACATGTGGCTTCCTCTTGATGGAAGGTTTCCCCAGGGATGTGAG
CCTAAGTTACACTTGCGAATCTTTTTGAACAACTCGCGTGGGACTGAAATTGTTATGAAT
TATCTGGCAAAGATGGGGAAAGAAGTAGGTAAGAAGATACACCTGCGGTCTGCTCAGACA
AATTCAGCGTTCCGTAAGCTCTTTAGTCTTCCTCCAGAAGAATTTCTTATCGATGATTTC
ACTTGTTATCTAAAGCGGAAAATGCCACTTCAGGGGCGCATTTTTCTCTCCTCAAGAATA
CTTGGATTCTATTCCAATATATTAGGCCGAAAAACCAAATTTTTCTTTCTTTGGGACGAC
ATTGATGATATCCAGGTTGCTCCACCAACCCTAGCAAAAGTTGGAAGTCCATCCTTGATG
ATCATTCTCCGCAAGGACAGAGGTCTAGAAGCCAGACATGGAGCCAAAACACTGGATCCT
CAAGGAAAACTGAAATACCATTTCCAGACATTTGTTTCATTCAATGATGCTCACAGAATT
ATTATGGCACTTTGGAAAATGAGGTCAGTGGATCCAGAACAGAAGGGAGAGATGATTGAC
AAAAATTCTGAACTGAAACAGCTCCCTTGTGAAGAAGGTTCTCTATTAGCCAATGAAGAT
GTGAAAATGTCAGAAGTCTACTCGGCGGTTCTTTCTGTTGATATCAATTCCTTGATGGAT
ATGTTCTCCGGAGGTCCATTGGAGCACAAGGTGATGCAGAAAGCTGGTTGCGTCGATTAC
TCGCCTACAGAATGGGAGCTACTAAACCAAAACATATACCAGAGGCAAATCAGCTTTAAG
TTTGACAAAATCTTGTCGCGCTTTGGAGAGGCATCAACCACTCAACGAAAATATAACTTA
GCGAATCGAGATGGGTGGGTCATTGAGGAGGTGATGACCCTCCAAGGAGTCCAACATGAA
GACTACTCCAGTATCCAGCTCAAGTATCAGATGACTAGCACGTCCTTAAAACCAAGCACC
TGCAGCATTCAGGTATTGTTAGGGATTGCCTGGTTGAAGGGAGCTAAGCAGCAGAAGAAG
GTTGTGAAGAATGTTATGTCGAATTCTGCCAACAGGTTGAGGGAGATATTTTCAGAAGTT
GAGAAGGAGCTTGCATCAAAAAAAGGTGTGAGCTGA

Peptide Sequence

PEP ID

Os02t0199800-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:5587185:5593645:-1 gene:Os02g0199800 transcript:Os02t0199800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA54 description:Similar to No pollen. (Os02t0199800-01)
Sequence

MARSVGGGSGGGGERPGSAPMRLCVHVLEARGLQAAYLTGHSDPYVRLQMGRRRAKTTVV
KRCLSPLWDEEFGFAVGDAEEELVVSVLNEEGYFGGGFLGRVKVPLSTVMAADGLSLGTA
WYHLHSKGGRFRKKRRVAGEIRLRIYLSRTAICDEPRNMPMQLINDTPCSSMRSVGTTAS
SLSARSVGTTASSLSARSVGTTASSLSASVSSLDLSACPSMERASCSSMDKLSQGIMDQQ
GRRSPGQLSCISTERSILLEPEEDDNDATTNASSVVEVMSRYFCRKPVDAAPSATSDHEQ
FQDTQMNSESCENGDNGALPETSLNELMKSLESKDKGSEMPENLRGGILVDQSYVLQPTE
MNSMLFSAHSDFWPAVAEVQGLSGFQTDPWKLVSNDCLKRTLSYTKAASKLVKAVKITEE
QTYLKAAGNSFAVLSSVSSPEVPCGNCFKVEILYCITPGPQLPSKEQTSHLTISWRLNFV
QSTMLKGMIESGTKQGLREGYAQFTEVLSQKTKVIAPDDSNLSKDEILSSLQTQEESIWK
LAARFLGNFAFIFSLCIALYATAHLRLVKPNMVHGLEYFGIDLPDSIWEVVFCAILIIQG
QNIFKSGRRFLYAWKQRGSDHGVKAHGDGWLLTVALIEGSGVVGSGTPGLPDPYVVFTCN
GKRKTSSVKFQTSEPKWNEIFEFNAMDDPPSRLEVVVHDSEGPHNKIPIGQTEVNFLKNN
LSDLGDMWLPLDGRFPQGCEPKLHLRIFLNNSRGTEIVMNYLAKMGKEVGKKIHLRSAQT
NSAFRKLFSLPPEEFLIDDFTCYLKRKMPLQGRIFLSSRILGFYSNILGRKTKFFFLWDD
IDDIQVAPPTLAKVGSPSLMIILRKDRGLEARHGAKTLDPQGKLKYHFQTFVSFNDAHRI
IMALWKMRSVDPEQKGEMIDKNSELKQLPCEEGSLLANEDVKMSEVYSAVLSVDINSLMD
MFSGGPLEHKVMQKAGCVDYSPTEWELLNQNIYQRQISFKFDKILSRFGEASTTQRKYNL
ANRDGWVIEEVMTLQGVQHEDYSSIQLKYQMTSTSLKPSTCSIQVLLGIAWLKGAKQQKK
VVKNVMSNSANRLREIFSEVEKELASKKGVS

Transcript Sequence

Transcript ID

Os02t0199800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:5587185:5593645:-1 gene:Os02g0199800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA54 description:Similar to No pollen. (Os02t0199800-01)
Sequence

AATCCCCAATTCCCCGGAGAAAAACCAGAGATCGCCATCGCCATTGCCGCCTCCTCCTCC
TCCTCCTCGAATGGCGAGATCGGTGGGCGGCGGCAGCGGCGGTGGCGGGGAGCGGCCGGG
GAGCGCGCCGATGCGGCTGTGCGTGCACGTGCTGGAGGCGCGGGGGCTCCAGGCGGCGTA
CCTCACCGGGCACAGCGACCCCTACGTGCGGCTGCAGATGGGGAGGCGGAGGGCGAAGAC
GACGGTGGTGAAGAGGTGCCTCAGCCCCCTGTGGGACGAGGAGTTCGGGTTCGCCGTCGG
CGACGCCGAGGAGGAGCTCGTCGTGTCCGTGCTCAACGAGGAGGGGTACTTCGGCGGGGG
GTTCCTGGGGCGGGTCAAGGTGCCCCTCTCGACCGTCATGGCGGCGGACGGCCTCTCCCT
CGGCACGGCGTGGTACCACCTCCACTCCAAGGGCGGCAGGTTCAGGAAGAAACGGCGCGT
TGCGGGTGAAATTCGCTTGAGGATTTACTTATCTAGGACAGCCATTTGCGACGAACCGAG
AAACATGCCAATGCAACTTATCAATGATACACCATGCAGCTCAATGAGGTCAGTTGGAAC
CACTGCCTCGTCCTTATCAGCGAGGTCAGTAGGAACCACTGCCTCGTCCTTATCAGCGAG
GTCAGTTGGAACCACTGCCTCGTCCTTATCGGCTTCTGTTAGTAGCCTTGATCTGTCAGC
CTGTCCTAGCATGGAAAGGGCATCCTGCAGCAGTATGGATAAGTTGAGCCAGGGCATCAT
GGATCAGCAAGGCCGTCGAAGCCCAGGGCAACTGTCTTGTATCAGCACAGAAAGATCTAT
TCTTTTGGAGCCCGAGGAAGATGACAATGATGCCACCACCAATGCATCATCAGTAGTGGA
AGTCATGTCTCGCTACTTTTGTCGGAAACCTGTTGACGCCGCACCTTCTGCCACATCAGA
TCATGAGCAGTTTCAAGATACACAAATGAACTCTGAATCTTGTGAAAATGGTGATAATGG
GGCGCTCCCTGAAACTAGTTTAAATGAGCTAATGAAATCCCTGGAGTCTAAAGATAAAGG
TTCTGAAATGCCAGAAAACTTGCGTGGTGGTATACTCGTGGACCAATCTTATGTTCTTCA
ACCAACTGAAATGAATTCCATGTTGTTTTCTGCACATTCAGATTTCTGGCCAGCAGTTGC
AGAAGTTCAAGGGTTAAGCGGATTCCAAACTGACCCCTGGAAACTTGTAAGCAATGATTG
TTTGAAAAGAACTTTAAGTTATACAAAAGCTGCAAGCAAATTAGTTAAAGCTGTAAAAAT
TACTGAAGAGCAGACATACTTAAAGGCAGCTGGAAATTCTTTTGCTGTTCTTTCCAGTGT
TAGCAGTCCTGAGGTTCCCTGTGGTAATTGTTTCAAGGTGGAGATTCTGTACTGTATAAC
ACCAGGTCCACAGTTGCCATCTAAAGAACAAACATCACATCTTACTATAAGTTGGCGTCT
GAACTTTGTCCAGAGTACAATGTTGAAAGGGATGATCGAGAGCGGGACAAAACAAGGACT
CCGAGAGGGATATGCACAGTTTACTGAAGTACTGTCCCAGAAGACCAAAGTGATTGCGCC
TGATGATTCTAACTTAAGCAAAGACGAGATTTTAAGCTCATTGCAGACACAGGAAGAATC
AATTTGGAAACTGGCTGCCCGCTTCCTTGGAAACTTTGCATTCATATTCTCTCTCTGTAT
AGCACTGTATGCCACTGCACATCTTCGTCTAGTTAAGCCAAATATGGTGCATGGGCTCGA
ATATTTTGGTATTGATCTCCCAGATTCAATTTGGGAGGTTGTATTTTGTGCCATTTTGAT
AATTCAGGGGCAGAATATCTTCAAATCAGGACGGCGGTTTTTGTATGCATGGAAACAAAG
AGGTAGTGATCATGGGGTGAAAGCTCATGGTGATGGTTGGTTGCTGACTGTTGCACTTAT
TGAGGGAAGCGGTGTAGTAGGTTCAGGTACACCTGGCTTGCCTGATCCTTATGTTGTTTT
TACCTGTAATGGAAAGAGGAAAACAAGCTCAGTTAAATTCCAGACATCCGAACCGAAATG
GAACGAGATATTTGAATTCAATGCAATGGATGATCCTCCATCAAGGTTGGAAGTAGTTGT
GCATGATTCAGAGGGACCACATAATAAAATTCCTATTGGTCAAACAGAAGTGAACTTTTT
GAAAAACAATTTGTCAGATTTGGGTGACATGTGGCTTCCTCTTGATGGAAGGTTTCCCCA
GGGATGTGAGCCTAAGTTACACTTGCGAATCTTTTTGAACAACTCGCGTGGGACTGAAAT
TGTTATGAATTATCTGGCAAAGATGGGGAAAGAAGTAGGTAAGAAGATACACCTGCGGTC
TGCTCAGACAAATTCAGCGTTCCGTAAGCTCTTTAGTCTTCCTCCAGAAGAATTTCTTAT
CGATGATTTCACTTGTTATCTAAAGCGGAAAATGCCACTTCAGGGGCGCATTTTTCTCTC
CTCAAGAATACTTGGATTCTATTCCAATATATTAGGCCGAAAAACCAAATTTTTCTTTCT
TTGGGACGACATTGATGATATCCAGGTTGCTCCACCAACCCTAGCAAAAGTTGGAAGTCC
ATCCTTGATGATCATTCTCCGCAAGGACAGAGGTCTAGAAGCCAGACATGGAGCCAAAAC
ACTGGATCCTCAAGGAAAACTGAAATACCATTTCCAGACATTTGTTTCATTCAATGATGC
TCACAGAATTATTATGGCACTTTGGAAAATGAGGTCAGTGGATCCAGAACAGAAGGGAGA
GATGATTGACAAAAATTCTGAACTGAAACAGCTCCCTTGTGAAGAAGGTTCTCTATTAGC
CAATGAAGATGTGAAAATGTCAGAAGTCTACTCGGCGGTTCTTTCTGTTGATATCAATTC
CTTGATGGATATGTTCTCCGGAGGTCCATTGGAGCACAAGGTGATGCAGAAAGCTGGTTG
CGTCGATTACTCGCCTACAGAATGGGAGCTACTAAACCAAAACATATACCAGAGGCAAAT
CAGCTTTAAGTTTGACAAAATCTTGTCGCGCTTTGGAGAGGCATCAACCACTCAACGAAA
ATATAACTTAGCGAATCGAGATGGGTGGGTCATTGAGGAGGTGATGACCCTCCAAGGAGT
CCAACATGAAGACTACTCCAGTATCCAGCTCAAGTATCAGATGACTAGCACGTCCTTAAA
ACCAAGCACCTGCAGCATTCAGGTATTGTTAGGGATTGCCTGGTTGAAGGGAGCTAAGCA
GCAGAAGAAGGTTGTGAAGAATGTTATGTCGAATTCTGCCAACAGGTTGAGGGAGATATT
TTCAGAAGTTGAGAAGGAGCTTGCATCAAAAAAAGGTGTGAGCTGACATCCCGTGCAAGA
TGAGTAGTAGATTGATTCATGTGTTCTGAACAATTAGAAGACTAAACGAAGGCAGCAAAG
CTCAGTAGCCAACACGATCTGTGTTAGCTCGACGGTATCACTGCTTCCTTTAGCTCTGTT
CACTCTTCTGCTGCCAACCTATCGCCTATGTAAAATTGTGAATACCTTGATAGGAATCCA
ACAAATTTGCATATACATATTTAAAACTGTAAACACGTGATTACAGAATGGAACGAAAAG
AATGAACTTATTTCTGGTGGCAGTAATTTTCTATAAAGATATTTGACCC