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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0190600-00
CDS Infomation

cds chromosome:IRGSP-1.0:2:5028576:5030493:-1 gene:Os02g0190600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lycopene e-cyclase, lycopene beta-cyclase description:Lycopene beta and epsilon cyclase domain containing protein. (Os02t0190600-00)
Sequence

ATGGCCACCACCGCCCTCCTCCTCCGCGCCCACCCCTCCTGCAAGCCCCCTCCCCCTCCC
TCGCCGTCGCCGCGCCCCACGCGCGCGCTCGTCTGCCGCGCCGCCGCCGCCGGCGAGGCG
CTGCGGTCGCTGGCCCCGCCGTCACGCCCCGAGCTGCTCTCCCTCGACCTCCCCCGCTAC
GACCCCGCCCGCTCCACCCCCGTCGACCTCGCCGTCGTCGGCGGCGGCCCCGCCGGCCTC
GCCGTCGCGCAGCGCGTCGCGGAGGCGGGCCTCTCCGTCTGCGCCATCGACCCCTCCCCC
GCCCTCGTCTGGCCCAACAACTACGGCGTCTGGGTCGACGAGTTCGACGCCATGGGACTC
TCCCACTGCCTCGACGCCGTCTGGCCCTCCGCCACCGTCTTCACCCACGACGACGGCGCC
GCCAAGTCGCTCCACCGCCCCTACGCCCGCGTCGCCCGCCGCAAGCTCAAGTCCACCATG
ATGGACCGCTGCGTCGCCCATGGCGTCACGTTCCACAAGGCCAGGGTCGTCAAGGCCGTC
CACGGCGAGGCATCCTCCCTCCTCATCTGCGACGACGGCGTCGCCGTCCCGGCCACCGTC
GTGCTCGACGCCACGGGGTTCTCCCGGTGCCTCGTCCAGTACGACAAGCCGTACGACCCG
GGGTACCAGGTCGCCTATGGCATCCTCGCCGAGGTGGACGGACACCCGTTCGACATCGAC
AAGATGCTGTTCATGGACTGGCGCGACGCGCACCTCCCCGAGGGGTCCGAGATCAGGGAG
CGCAACCGCCGCATCCCGACGTTCCTCTACGCCATGCCCTTCTCCCCGACGAGGATCTTC
CTCGAGGAGACCTCCCTCGTGGCGCGCCCGGGCCTCGCCATGGACGACATCCAGGAGCGC
ATGGCGGCGAGGCTGCGCCACCTCGGGATACGCGTCCGCGCCGTGGAGGAGGACGAGCGG
TGCGTCATCCCCATGGGCGGCCCGCTCCCGGTGCTCCCGCAGCGGGTCGTCGGCATCGGC
GGCACCGCCGGGATGGTGCACCCGTCCACGGGCTACATGGTGGCGCGCACCCTCGCCACT
GCGCCCATCGTGGCGGACGCCATCGTGCGCTTCCTCGACACCGGCAGCGGCGACAGCGCG
TTCGCCGGCGACGCGCTGTCGGCGGAGGTGTGGAGGGAGCTGTGGCCGGCGCAGAGGAGG
AGGCAGAGGGAGTTCTTCTGCTTCGGCATGGACATCCTCCTCAAGCTCGACCTCGACGGC
ACGCGGCGATTCTTCGACGCCTTCTTCGACCTGGAGCCGCGCTACTGGCACGGCTTCCTG
TCGTCGAGGCTCTTCTTGCCGGAGCTCGCCATGTTCGGCCTCTCCCTCTTCGCCAAGGCC
TCCAACACGTCGCGCCTCGAGATCATGGCCAAGGGCACCGCCCCTCTCGCCAAGATGATC
GGCAACCTCATCCAGGACAGAGATAGGTGA

Peptide Sequence

PEP ID

Os02t0190600-00
PEP Infomation

pep chromosome:IRGSP-1.0:2:5028576:5030493:-1 gene:Os02g0190600 transcript:Os02t0190600-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lycopene e-cyclase, lycopene beta-cyclase description:Lycopene beta and epsilon cyclase domain containing protein. (Os02t0190600-00)
Sequence

MATTALLLRAHPSCKPPPPPSPSPRPTRALVCRAAAAGEALRSLAPPSRPELLSLDLPRY
DPARSTPVDLAVVGGGPAGLAVAQRVAEAGLSVCAIDPSPALVWPNNYGVWVDEFDAMGL
SHCLDAVWPSATVFTHDDGAAKSLHRPYARVARRKLKSTMMDRCVAHGVTFHKARVVKAV
HGEASSLLICDDGVAVPATVVLDATGFSRCLVQYDKPYDPGYQVAYGILAEVDGHPFDID
KMLFMDWRDAHLPEGSEIRERNRRIPTFLYAMPFSPTRIFLEETSLVARPGLAMDDIQER
MAARLRHLGIRVRAVEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAT
APIVADAIVRFLDTGSGDSAFAGDALSAEVWRELWPAQRRRQREFFCFGMDILLKLDLDG
TRRFFDAFFDLEPRYWHGFLSSRLFLPELAMFGLSLFAKASNTSRLEIMAKGTAPLAKMI
GNLIQDRDR

Transcript Sequence

Transcript ID

Os02t0190600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:5028576:5030493:-1 gene:Os02g0190600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lycopene e-cyclase, lycopene beta-cyclase description:Lycopene beta and epsilon cyclase domain containing protein. (Os02t0190600-00)
Sequence

CCCCCCTACCACTCTCCCTGACCTCGCGGCCGCCCCACCCGCAATAAGAGGAAGAAAAGC
TTATCAGGATTGCACGGCGATTCCCCACCTCCCGCGCCACGCCGCGCCGCCATGGCCACC
ACCGCCCTCCTCCTCCGCGCCCACCCCTCCTGCAAGCCCCCTCCCCCTCCCTCGCCGTCG
CCGCGCCCCACGCGCGCGCTCGTCTGCCGCGCCGCCGCCGCCGGCGAGGCGCTGCGGTCG
CTGGCCCCGCCGTCACGCCCCGAGCTGCTCTCCCTCGACCTCCCCCGCTACGACCCCGCC
CGCTCCACCCCCGTCGACCTCGCCGTCGTCGGCGGCGGCCCCGCCGGCCTCGCCGTCGCG
CAGCGCGTCGCGGAGGCGGGCCTCTCCGTCTGCGCCATCGACCCCTCCCCCGCCCTCGTC
TGGCCCAACAACTACGGCGTCTGGGTCGACGAGTTCGACGCCATGGGACTCTCCCACTGC
CTCGACGCCGTCTGGCCCTCCGCCACCGTCTTCACCCACGACGACGGCGCCGCCAAGTCG
CTCCACCGCCCCTACGCCCGCGTCGCCCGCCGCAAGCTCAAGTCCACCATGATGGACCGC
TGCGTCGCCCATGGCGTCACGTTCCACAAGGCCAGGGTCGTCAAGGCCGTCCACGGCGAG
GCATCCTCCCTCCTCATCTGCGACGACGGCGTCGCCGTCCCGGCCACCGTCGTGCTCGAC
GCCACGGGGTTCTCCCGGTGCCTCGTCCAGTACGACAAGCCGTACGACCCGGGGTACCAG
GTCGCCTATGGCATCCTCGCCGAGGTGGACGGACACCCGTTCGACATCGACAAGATGCTG
TTCATGGACTGGCGCGACGCGCACCTCCCCGAGGGGTCCGAGATCAGGGAGCGCAACCGC
CGCATCCCGACGTTCCTCTACGCCATGCCCTTCTCCCCGACGAGGATCTTCCTCGAGGAG
ACCTCCCTCGTGGCGCGCCCGGGCCTCGCCATGGACGACATCCAGGAGCGCATGGCGGCG
AGGCTGCGCCACCTCGGGATACGCGTCCGCGCCGTGGAGGAGGACGAGCGGTGCGTCATC
CCCATGGGCGGCCCGCTCCCGGTGCTCCCGCAGCGGGTCGTCGGCATCGGCGGCACCGCC
GGGATGGTGCACCCGTCCACGGGCTACATGGTGGCGCGCACCCTCGCCACTGCGCCCATC
GTGGCGGACGCCATCGTGCGCTTCCTCGACACCGGCAGCGGCGACAGCGCGTTCGCCGGC
GACGCGCTGTCGGCGGAGGTGTGGAGGGAGCTGTGGCCGGCGCAGAGGAGGAGGCAGAGG
GAGTTCTTCTGCTTCGGCATGGACATCCTCCTCAAGCTCGACCTCGACGGCACGCGGCGA
TTCTTCGACGCCTTCTTCGACCTGGAGCCGCGCTACTGGCACGGCTTCCTGTCGTCGAGG
CTCTTCTTGCCGGAGCTCGCCATGTTCGGCCTCTCCCTCTTCGCCAAGGCCTCCAACACG
TCGCGCCTCGAGATCATGGCCAAGGGCACCGCCCCTCTCGCCAAGATGATCGGCAACCTC
ATCCAGGACAGAGATAGGTGAGGTGAGGATCTGCATCATCTCTCATCTCAAGATCTGCAT
TTGGATCACTGAATTTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGAATGTATCCAAGATT
TGCAAAGATGAGAACACCATTAGCAGCAGCAAGCTAGGAGACAATCCATCCAGGAGATGA
AGTGTGTGAGTTGAGTAACAATTGCTGCTGCAAAACACACTCTTTTTTAAGCCTGGTGAT
TACAAAATTTGAGCTGTATAGTTCATATTTGAGGTATGATGATGTGCCTCTCAATGTACT
GTATAAATGTCATGATGTCAAACACACAGATCAATATTTCCCCAGACATATGGTAAAA