Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0188500-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:4908958:4911255:-1 gene:Os02g0188500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA50 description:Ubiquitin domain containing protein. (Os02t0188500-01);Ubiquitin domain containing protein. (Os02t0188500-02)
Sequence

ATGAAGGGCGAGGCGGGTCTCGATCGGTGGAGGGGGAAAGATTTCTCCTCCAGTTTTCCT
CTAGTTTTGATCCTGGAGGAGGTGGCTGCTGCATCTTCTTCTTCACCGAAGATTGGAGGA
GTGGATTTCGTGTGGTTGTTGCGGCCGACCGCTTTCTTGCTCTCTTGGCTCGTCGGCCTC
CGCCGCCGATGCTGCGGGATGCCGTCCCCCGACGCCGCCGCCGGCGATATTGAGAGCGCC
CTCGACGACTTCGCCCGCGCCGACGCCGACTGCATCGCCGCCGCCCTCGCCTGCGGCCGC
ACCAGCTTCTCCTACCGCCGCCTCCCCGAGCCGCGCCGCCTCCGCCTCACCGTCCGCAAG
CTCGACGACTCCTACTTCGATGTGCAAATCGCGAGGTCAGCCGCGGTGTGGGAGCTCAAG
GCGGCCATCGAGGACGTGTTCGCCGCGCTCTACGATGAAACGGACAACAAGGCCATCTCT
TGGCAGCACGTGTGGAGCCACTTTTGCTTATGTTTCAAGGACGAGAAATTGACAGATGAC
AAGGCAACATTGCGTGCATTTGGTATAAGAGATGGTGATGAGGTTCATTTTGCCCAGCAT
CTTTCTGTTGAATACAGACCCTGCAAGTCCCTTTCCCTCAGAAGGTCAAGGACTTCATTG
GATGATTTCAGTGCTAGGTCAAGGAGTTTGTTGGACGATCTCGGCGAAGATGATGGTGAT
AAGTTTATCGACACGAGGCATTCTACTAGTGTTTTGGAGGAAGGGCTATATGTTTATCAG
CACGATGAGGAGCGCATGGAAGAGAGTCGCAAGAAGGGAGGCTTCTTTAGCGGTTGGTTC
TCCTATTCTAGATTGAGGGGCAACAGTAGGACACATTCAGAGGATGCCATCCAATCCTCC
TGCGAAAAGAGAGATACTCGAACTCGGCCAAAGCTGGGGAGATGGTTGTCTTCCAAAAAA
ACTAAAGGCACATAG

Peptide Sequence

PEP ID

Os02t0188500-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:4908958:4911255:-1 gene:Os02g0188500 transcript:Os02t0188500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA50 description:Ubiquitin domain containing protein. (Os02t0188500-01);Ubiquitin domain containing protein. (Os02t0188500-02)
Sequence

MKGEAGLDRWRGKDFSSSFPLVLILEEVAAASSSSPKIGGVDFVWLLRPTAFLLSWLVGL
RRRCCGMPSPDAAAGDIESALDDFARADADCIAAALACGRTSFSYRRLPEPRRLRLTVRK
LDDSYFDVQIARSAAVWELKAAIEDVFAALYDETDNKAISWQHVWSHFCLCFKDEKLTDD
KATLRAFGIRDGDEVHFAQHLSVEYRPCKSLSLRRSRTSLDDFSARSRSLLDDLGEDDGD
KFIDTRHSTSVLEEGLYVYQHDEERMEESRKKGGFFSGWFSYSRLRGNSRTHSEDAIQSS
CEKRDTRTRPKLGRWLSSKKTKGT

Transcript Sequence

Transcript ID

Os02t0188500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4908958:4911255:-1 gene:Os02g0188500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsSTA50 description:Ubiquitin domain containing protein. (Os02t0188500-01);Ubiquitin domain containing protein. (Os02t0188500-02)
Sequence

ACGGGGAACCATCTCTCTCTCCTCGCCCCCGCCGCCGCCGCTGCTCCTCCTCCGATCGGT
GGAGCAGCAGCCTTCATGAAGGGCGAGGCGGGTCTCGATCGGTGGAGGGGGAAAGATTTC
TCCTCCAGTTTTCCTCTAGTTTTGATCCTGGAGGAGGTGGCTGCTGCATCTTCTTCTTCA
CCGAAGATTGGAGGAGTGGATTTCGTGTGGTTGTTGCGGCCGACCGCTTTCTTGCTCTCT
TGGCTCGTCGGCCTCCGCCGCCGATGCTGCGGGATGCCGTCCCCCGACGCCGCCGCCGGC
GATATTGAGAGCGCCCTCGACGACTTCGCCCGCGCCGACGCCGACTGCATCGCCGCCGCC
CTCGCCTGCGGCCGCACCAGCTTCTCCTACCGCCGCCTCCCCGAGCCGCGCCGCCTCCGC
CTCACCGTCCGCAAGCTCGACGACTCCTACTTCGATGTGCAAATCGCGAGGTCAGCCGCG
GTGTGGGAGCTCAAGGCGGCCATCGAGGACGTGTTCGCCGCGCTCTACGATGAAACGGAC
AACAAGGCCATCTCTTGGCAGCACGTGTGGAGCCACTTTTGCTTATGTTTCAAGGACGAG
AAATTGACAGATGACAAGGCAACATTGCGTGCATTTGGTATAAGAGATGGTGATGAGGTT
CATTTTGCCCAGCATCTTTCTGTTGAATACAGACCCTGCAAGTCCCTTTCCCTCAGAAGG
TCAAGGACTTCATTGGATGATTTCAGTGCTAGGTCAAGGAGTTTGTTGGACGATCTCGGC
GAAGATGATGGTGATAAGTTTATCGACACGAGGCATTCTACTAGTGTTTTGGAGGAAGGG
CTATATGTTTATCAGCACGATGAGGAGCGCATGGAAGAGAGTCGCAAGAAGGGAGGCTTC
TTTAGCGGTTGGTTCTCCTATTCTAGATTGAGGGGCAACAGTAGGACACATTCAGAGGAT
GCCATCCAATCCTCCTGCGAAAAGAGAGATACTCGAACTCGGCCAAAGCTGGGGAGATGG
TTGTCTTCCAAAAAAACTAAAGGCACATAGCAATCTAGATTGCCAACTGTATCTCACACG
TGTTGCTTTGTTCTTCTGAAATGAAAATCAAAATTACATTCTTGTC