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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0187800-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:4870185:4872957:-1 gene:Os02g0187800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GOLD HULL AND INTERNODE 2 description:Cinnamyl-alcohol dehydrogenase, Lignin biosynthesis, Monolignol biosynthesis (Os02t0187800-01);Similar to Cinnamyl alcohol dehydrogenase 1a. (Os02t0187800-02)
Sequence

TTGTATTGTGGTATCTGCCATACTGACATCCACCAGGCCAAGAACCACCTTGGTGCTTCC
AAGTACCCCATGGTCCCTGGCCATGAGGTGGTCGGCGAGGTGGTGGAGGTCGGGCCGGAG
GTGACCAAGTACAGCGCCGGCGACGTCGTCGGCGTCGGCGTCATCGTCGGCTGCTGCCGC
GAGTGCCATCCGTGCAAGGCCAATGTGGAGCAGTACTGCAACAAGAGGATTTGGTCCTAC
AACGACGTCTACACCGACGGCCGGCCAACCCAGGGCGGCTTCGCCTCCGCCATGGTCGTC
GACCAGAAGTTTGTGGTGAAGATCCCGGCGGGGCTAGCGCCGGAGCAGGCGGCGCCGCTG
CTGTGCGCCGGGCTGACGGTGTACAGCCCACTGAAGCACTTCGGGCTGATGTCGCCAGGT
CTCCGCGGCGGCGTCCTGGGGCTCGGCGGCGTGGGGCACATGGGCGTGAAGGTGGCCAAG
TCGATGGGGCACCACGTGACGGTGATCAGCTCGTCGGCGAGGAAGCGCGGCGAGGCCATG
GACGACCTGGGCGCCGACGCCTACCTCGTCAGCTCCGACGCGGCGGCGATGGCGGCCGCC
GGCGACTCGCTGGACTACATCATCGACACCGTGCCGGTGCACCACCCGCTGGAGCCGTAC
CTGGCGCTGCTGAAGCTGGACGGGAAGCTGATCCTGATGGGGGTGATCAACCAGCCGCTG
AGCTTCATCTCGCCCATGGTGATGCTCGGCCGGAAGGCCATCACCGGCAGCTTCATCGGG
AGCATGGCCGAGACGGAGGAGGTGCTCAACTTCTGCGTCGACAAGGGGCTCACCTCCCAG
ATCGAGGTCGTCAAGATGGACTACGTCAACCAGGCCCTCGAGCGCCTCGAGCGCAACGAC
GTCCGCTACCGCTTCGTCGTCGACGTCGCCGGCAGCAACATCGACGACGCCGACGCGCCG
CCCGCCTGA

Peptide Sequence

PEP ID

Os02t0187800-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:4870185:4872957:-1 gene:Os02g0187800 transcript:Os02t0187800-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GOLD HULL AND INTERNODE 2 description:Cinnamyl-alcohol dehydrogenase, Lignin biosynthesis, Monolignol biosynthesis (Os02t0187800-01);Similar to Cinnamyl alcohol dehydrogenase 1a. (Os02t0187800-02)
Sequence

LYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVTKYSAGDVVGVGVIVGCCR
ECHPCKANVEQYCNKRIWSYNDVYTDGRPTQGGFASAMVVDQKFVVKIPAGLAPEQAAPL
LCAGLTVYSPLKHFGLMSPGLRGGVLGLGGVGHMGVKVAKSMGHHVTVISSSARKRGEAM
DDLGADAYLVSSDAAAMAAAGDSLDYIIDTVPVHHPLEPYLALLKLDGKLILMGVINQPL
SFISPMVMLGRKAITGSFIGSMAETEEVLNFCVDKGLTSQIEVVKMDYVNQALERLERND
VRYRFVVDVAGSNIDDADAPPA

Transcript Sequence

Transcript ID

Os02t0187800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4870185:4872957:-1 gene:Os02g0187800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GOLD HULL AND INTERNODE 2 description:Cinnamyl-alcohol dehydrogenase, Lignin biosynthesis, Monolignol biosynthesis (Os02t0187800-01);Similar to Cinnamyl alcohol dehydrogenase 1a. (Os02t0187800-02)
Sequence

TTTGTATTGTGGTATCTGCCATACTGACATCCACCAGGCCAAGAACCACCTTGGTGCTTC
CAAGTACCCCATGGTCCCTGGCCATGAGGTGGTCGGCGAGGTGGTGGAGGTCGGGCCGGA
GGTGACCAAGTACAGCGCCGGCGACGTCGTCGGCGTCGGCGTCATCGTCGGCTGCTGCCG
CGAGTGCCATCCGTGCAAGGCCAATGTGGAGCAGTACTGCAACAAGAGGATTTGGTCCTA
CAACGACGTCTACACCGACGGCCGGCCAACCCAGGGCGGCTTCGCCTCCGCCATGGTCGT
CGACCAGAAGTTTGTGGTGAAGATCCCGGCGGGGCTAGCGCCGGAGCAGGCGGCGCCGCT
GCTGTGCGCCGGGCTGACGGTGTACAGCCCACTGAAGCACTTCGGGCTGATGTCGCCAGG
TCTCCGCGGCGGCGTCCTGGGGCTCGGCGGCGTGGGGCACATGGGCGTGAAGGTGGCCAA
GTCGATGGGGCACCACGTGACGGTGATCAGCTCGTCGGCGAGGAAGCGCGGCGAGGCCAT
GGACGACCTGGGCGCCGACGCCTACCTCGTCAGCTCCGACGCGGCGGCGATGGCGGCCGC
CGGCGACTCGCTGGACTACATCATCGACACCGTGCCGGTGCACCACCCGCTGGAGCCGTA
CCTGGCGCTGCTGAAGCTGGACGGGAAGCTGATCCTGATGGGGGTGATCAACCAGCCGCT
GAGCTTCATCTCGCCCATGGTGATGCTCGGCCGGAAGGCCATCACCGGCAGCTTCATCGG
GAGCATGGCCGAGACGGAGGAGGTGCTCAACTTCTGCGTCGACAAGGGGCTCACCTCCCA
GATCGAGGTCGTCAAGATGGACTACGTCAACCAGGCCCTCGAGCGCCTCGAGCGCAACGA
CGTCCGCTACCGCTTCGTCGTCGACGTCGCCGGCAGCAACATCGACGACGCCGACGCGCC
GCCCGCCTGATCGCCGCCGTGCACCCTCATGGCAGCATCCGTATGATCCGTTCTTGAACT
TGTTTGTGTGAGACTCTGACGACTTGTCCATGTAACGTCCGTGTGCCTTTCCGGTATAAA
TTCGGCCTCGCAATATATGGACC