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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0187600-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:4859744:4862765:1 gene:Os02g0187600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tic21. (Os02t0187600-01);Similar to Tic21. (Os02t0187600-02)
Sequence

ATGCAGGCGGCGCTCCTACTCCCAGCGCGGCCGTCGGCGGCGGCGCCGCCTACGCTCTTG
CGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCCACTCCCCTCCCTGCGGGGCGC
CTCAGCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACCGTGGCGGCGGCGGGGTCGTCG
TCGTCGTCGTCGGGCCCTCTCTACCCGACGCCTCCCCCCACCGAGCAGGACATCGAGCGG
GCCAAGTTCGAGCAGGTTGTCAAGAGACTGGGGAAAACAGCGAGGTATTTCAAGAATTTG
GGTACTCTTGGGTTCTGGTCCCAGTTGGTGTCCACAGTTGTTTCCGCTGGAATTTTGTCA
TTTTCTACAGTTATTACTGGGAAGGTGACAGCACCTTTTACATTCTATGCAACTGCTGCT
GGTATTGCCGCGGGTTTTATTTCAGTCTTCTGGTCATTTGGTTACATCCGCCTTTCTGAA
AGACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAATTAGA
AGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATG
CAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTAT
CAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTAGATGTTTTCCTAGTTCAGGCT
TCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGCTGCGC
TCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGA

Peptide Sequence

PEP ID

Os02t0187600-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:4859744:4862765:1 gene:Os02g0187600 transcript:Os02t0187600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tic21. (Os02t0187600-01);Similar to Tic21. (Os02t0187600-02)
Sequence

MQAALLLPARPSAAAPPTLLRRGAASASSARAPTPLPAGRLSGGVLSAVRRLTVAAAGSS
SSSSGPLYPTPPPTEQDIERAKFEQVVKRLGKTARYFKNLGTLGFWSQLVSTVVSAGILS
FSTVITGKVTAPFTFYATAAGIAAGFISVFWSFGYIRLSERLRKTASEPAKAPPRADVIR
SLKNGIVLNMLGMGAAVLGMQATVGALVAKALTTSAVPYYQATSPGQSPVLALDVFLVQA
SANIILSHFLGLASSLELLRSVAIPPAEAAAA

Transcript Sequence

Transcript ID

Os02t0187600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4859744:4862765:1 gene:Os02g0187600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Tic21. (Os02t0187600-01);Similar to Tic21. (Os02t0187600-02)
Sequence

AGCAGCATCACAATCAGCGAGATGCAGGCGGCGCTCCTACTCCCAGCGCGGCCGTCGGCG
GCGGCGCCGCCTACGCTCTTGCGGCGGGGGGCGGCTTCTGCGTCCTCCGCGCGCGCTCCC
ACTCCCCTCCCTGCGGGGCGCCTCAGCGGCGGCGTGCTGAGCGCTGTGCGGCGCCTTACC
GTGGCGGCGGCGGGGTCGTCGTCGTCGTCGTCGGGCCCTCTCTACCCGACGCCTCCCCCC
ACCGAGCAGGACATCGAGCGGGCCAAGTTCGAGCAGGTTGTCAAGAGACTGGGGAAAACA
GCGAGGTATTTCAAGAATTTGGGTACTCTTGGGTTCTGGTCCCAGTTGGTGTCCACAGTT
GTTTCCGCTGGAATTTTGTCATTTTCTACAGTTATTACTGGGAAGGTGACAGCACCTTTT
ACATTCTATGCAACTGCTGCTGGTATTGCCGCGGGTTTTATTTCAGTCTTCTGGTCATTT
GGTTACATCCGCCTTTCTGAAAGACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCT
CCACGTGCTGATGTAATTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATG
GGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGGGCTTTGGTAGCGAAGGCTCTTACT
ACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGCTCTA
GATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCG
AGCTCCCTGGAGTTGCTGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGA
GCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCGTTGATCATCTTGCTCTTCATTTGC
TGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTCTTGT
CCAGACAAAATTTAAAAAAAATCTAGCTTTCACTGCGT