Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0180500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:4486531:4489409:-1 gene:Os02g0180500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase). (Os02t0180500-01)
Sequence

ATGGGCGAGGCGGAGCTGAGCCTGGCGGCGGTGCGCGACGCGCTGGTGCGGGAGGAGGAC
TCCATCGTCTTCGCCCTCATCGAGCGCGCCAGGCGCCCGCGCAACGCGCCGGCATACGCG
GCCGCCGCCGCCGCCGGCGGCCGATCCCTCGCCGAGTTCTTCGTCCGGGAAGCCGAGGTT
CTGCACGCCAAGGCCGGACAATACCAAAAGCCAGAAGATGTTCCATTCTTTCCCCAAGAT
CTCCCTTCACCTCTATTTCCTACCAAAGATTACCCAAAGGTTTTGCACTCTTTTGCATCA
TCAGTCAGTGTGAATGATGCAATATGGAAGATGTATTTCAACGAGTTGCTTCCACTATTC
ACTGTGGATGGAGATGATGGTAACTATGCAGAAACAGTTGCATTAGATTTTGCATGTCTG
AAGGCCCTGTCAAGAAGAATTCATATTGGTAAATATGTTGCTGAGGTGAAGTTCAAAGAT
GCTTCCCAAGATTATAGTCCACTAATCCGTGCAAAGGATACCAAGGCTCTGATGAATCTG
CTAACATTCAAGGCGGTTGAAGAGAAGGTGAAAAGGAGAGTAGAGAAGAAGGCCAGGATA
TTTGGTCAGAATGTCACTTTGGAGGACAATGCTGACAAGCAAGAAGGCAATGCAGGTGAC
AGTGAGTGCAAAGTTAATCCTGAAGTGCTATCTAAGCTATATGATCTGTGGGTAATGCCT
TTGACGAAGGATGTTGAAGTTGAGTATCTTCTCCGCCGTCTTGACTGA

Peptide Sequence

PEP ID

Os02t0180500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:4486531:4489409:-1 gene:Os02g0180500 transcript:Os02t0180500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase). (Os02t0180500-01)
Sequence

MGEAELSLAAVRDALVREEDSIVFALIERARRPRNAPAYAAAAAAGGRSLAEFFVREAEV
LHAKAGQYQKPEDVPFFPQDLPSPLFPTKDYPKVLHSFASSVSVNDAIWKMYFNELLPLF
TVDGDDGNYAETVALDFACLKALSRRIHIGKYVAEVKFKDASQDYSPLIRAKDTKALMNL
LTFKAVEEKVKRRVEKKARIFGQNVTLEDNADKQEGNAGDSECKVNPEVLSKLYDLWVMP
LTKDVEVEYLLRRLD

Transcript Sequence

Transcript ID

Os02t0180500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4486531:4489409:-1 gene:Os02g0180500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase). (Os02t0180500-01)
Sequence

TGTGGAGGATCAGCAGCAGCAGCTTTCCCTTAGCTCGCGAGCTCATCAGTCATCACAGGG
CGGATCGAGAGATCATCGATGGGCGAGGCGGAGCTGAGCCTGGCGGCGGTGCGCGACGCG
CTGGTGCGGGAGGAGGACTCCATCGTCTTCGCCCTCATCGAGCGCGCCAGGCGCCCGCGC
AACGCGCCGGCATACGCGGCCGCCGCCGCCGCCGGCGGCCGATCCCTCGCCGAGTTCTTC
GTCCGGGAAGCCGAGGTTCTGCACGCCAAGGCCGGACAATACCAAAAGCCAGAAGATGTT
CCATTCTTTCCCCAAGATCTCCCTTCACCTCTATTTCCTACCAAAGATTACCCAAAGGTT
TTGCACTCTTTTGCATCATCAGTCAGTGTGAATGATGCAATATGGAAGATGTATTTCAAC
GAGTTGCTTCCACTATTCACTGTGGATGGAGATGATGGTAACTATGCAGAAACAGTTGCA
TTAGATTTTGCATGTCTGAAGGCCCTGTCAAGAAGAATTCATATTGGTAAATATGTTGCT
GAGGTGAAGTTCAAAGATGCTTCCCAAGATTATAGTCCACTAATCCGTGCAAAGGATACC
AAGGCTCTGATGAATCTGCTAACATTCAAGGCGGTTGAAGAGAAGGTGAAAAGGAGAGTA
GAGAAGAAGGCCAGGATATTTGGTCAGAATGTCACTTTGGAGGACAATGCTGACAAGCAA
GAAGGCAATGCAGGTGACAGTGAGTGCAAAGTTAATCCTGAAGTGCTATCTAAGCTATAT
GATCTGTGGGTAATGCCTTTGACGAAGGATGTTGAAGTTGAGTATCTTCTCCGCCGTCTT
GACTGATTCGCCAAAATATTTTCAGCTGCAAATATGATGAACACAATTATGTAAGCACAT
ATAAATAGACTTATTGAATGTGGCATGAGGAAATCCATCAAGAACAGCTAACAGCGGTGA
CTTGCTGTAGAATTTCCGGTACTGTATCTTGGATCTTTCTTCATCTCCGTTTTCGGAGCT
GAGACATATAGGGCCTGTTTGGTACAGCTCTAACTCCTAAATTTAGCTCCAAGAGTTGGG
TCTGGAGTGGAGTTGTGGAGCTGCCTAAACCCAGCTCCACAACTCTAGTTCATTTTGTGA
GAGAGCTCCACCCAGCTCCACTCCCAGTTTTGGTGGAGCTGAAACTGTTTGGCTGAGCTC
CAGCTCCAGGAGGGGTAGAGCTGGAGCTGGAGCTGTGCCAAACAGGCCCATAGATTGATG
GCAATGATCTGCAACCCAAAAGGTTCATCCTACCTAACTGTGGTGGCTGATACTGAGGGC
CTGGTGAATTCCCAGCAAAGATGCTGCAACTCCAGTTTCTGTAACAATCTGTAACTCCTG
TTATTATATCACCATAGTTTTGTGCTACTTCTTGGTAGTAGCATTTCTGTTC