Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0180100-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:4455016:4457715:-1 gene:Os02g0180100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 family protein. (Os02t0180100-01)
Sequence

ATGTCTTGGGCTGCAATCGAGAATGATCCTGGCATTTTTACTGAACTGTTGCAACAGATG
CAACTGAAGGGTCTTCAAGTTGATGAACTCTATTCACTCGATCTGGATGCCCTCAATGAT
CTTCAGCCAGTTTATGGGCTCATTGTGCTGTACAAATGGCAACCTCCAGAAAAAGATGAG
CGTCCTATCAAGGACCCAATCCCAAACCTTTTCTTTGCTAAGCAGATAATTAACAATGCA
TGTGCCACCCAAGCTATCGTTTCTGTTCTATTAAACTCTCCGGGTATCACCCTTAGTGAG
GAGCTCAAAAAGCTAAAGGAGTTTGCAAAGGACTTGCCACCAGATCTCAAAGGATTGGCT
ATAGTCAATTCTGAGAGCATCCGTTTGGCCAGTAATTCATTTGCAAGGCCGGAAGTCCCC
GAGGAGCAGAAATCATCTGTCAAGGATGATGATGTCTACCATTTCATTAGCTATGTTCCT
GTGGACGGTGTCCTGTATGAGCTTGATGGGCTAAAGGAAGGGCCAATAAGCCTGGGGAAA
TGCCCAGGTGGCGTTGGCGACATAGGTTGGCTGAGGATGGTGCAGCCTGTCATTCAGGAA
CGCATCGATCGGTTCTCTCAGAATGAGATAAGGTTCAGCGTCATGGCTATCCTAAAGAAC
CGGAGGGAGAAGTTCACTTTAGAACTCAAGGAGCTTCAGAGGAAGAGGGAGAACCTCCTG
GCACAGATGGGTGATCCTTCCGCCAATAGGCACGCGCCATCTGTTGAGCACTCTCTTGCG
GAGGTTGCTGCTCATATTGAGGCTGTAACAGAGAAGATCATAATGGAGGAAGAGAAGTGG
AAGAAGTGGAAGACAGAGAACATCAGGAGGAAGCACAACTATGTGCCATTCTTGTTCAAT
TTCCTCAAGATTCTTGAGGAGAGGCAGCAGTTGAAGCCCCTGATAGAGAAGGCGAAACAG
AAGTCTCACAGCTCTGCTAATCCTAGGTGA

Peptide Sequence

PEP ID

Os02t0180100-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:4455016:4457715:-1 gene:Os02g0180100 transcript:Os02t0180100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 family protein. (Os02t0180100-01)
Sequence

MSWAAIENDPGIFTELLQQMQLKGLQVDELYSLDLDALNDLQPVYGLIVLYKWQPPEKDE
RPIKDPIPNLFFAKQIINNACATQAIVSVLLNSPGITLSEELKKLKEFAKDLPPDLKGLA
IVNSESIRLASNSFARPEVPEEQKSSVKDDDVYHFISYVPVDGVLYELDGLKEGPISLGK
CPGGVGDIGWLRMVQPVIQERIDRFSQNEIRFSVMAILKNRREKFTLELKELQRKRENLL
AQMGDPSANRHAPSVEHSLAEVAAHIEAVTEKIIMEEEKWKKWKTENIRRKHNYVPFLFN
FLKILEERQQLKPLIEKAKQKSHSSANPR

Transcript Sequence

Transcript ID

Os02t0180100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4455016:4457715:-1 gene:Os02g0180100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 family protein. (Os02t0180100-01)
Sequence

CTCCAGTCCAATCTCACCCATCGCCGACGACCCACGCACGCAGTCCACCAACGCGCCGCC
GCCGCCGAATCCGCTTCGCTCCCTCCGCCGCGCCGCGCGCCACCTCCGTCGACGCTGGCC
CGACGCGCGCGGTTCGTGAAGGAGGAGGAGGAGGAGGAGCTTCTGCCGGGTCGGACCGTC
GGTTTCTCTCGTTGACCTGCAGGAGGGTGCGCAGGGTTTCTTCTTCGACATGTCTTGGGC
TGCAATCGAGAATGATCCTGGCATTTTTACTGAACTGTTGCAACAGATGCAACTGAAGGG
TCTTCAAGTTGATGAACTCTATTCACTCGATCTGGATGCCCTCAATGATCTTCAGCCAGT
TTATGGGCTCATTGTGCTGTACAAATGGCAACCTCCAGAAAAAGATGAGCGTCCTATCAA
GGACCCAATCCCAAACCTTTTCTTTGCTAAGCAGATAATTAACAATGCATGTGCCACCCA
AGCTATCGTTTCTGTTCTATTAAACTCTCCGGGTATCACCCTTAGTGAGGAGCTCAAAAA
GCTAAAGGAGTTTGCAAAGGACTTGCCACCAGATCTCAAAGGATTGGCTATAGTCAATTC
TGAGAGCATCCGTTTGGCCAGTAATTCATTTGCAAGGCCGGAAGTCCCCGAGGAGCAGAA
ATCATCTGTCAAGGATGATGATGTCTACCATTTCATTAGCTATGTTCCTGTGGACGGTGT
CCTGTATGAGCTTGATGGGCTAAAGGAAGGGCCAATAAGCCTGGGGAAATGCCCAGGTGG
CGTTGGCGACATAGGTTGGCTGAGGATGGTGCAGCCTGTCATTCAGGAACGCATCGATCG
GTTCTCTCAGAATGAGATAAGGTTCAGCGTCATGGCTATCCTAAAGAACCGGAGGGAGAA
GTTCACTTTAGAACTCAAGGAGCTTCAGAGGAAGAGGGAGAACCTCCTGGCACAGATGGG
TGATCCTTCCGCCAATAGGCACGCGCCATCTGTTGAGCACTCTCTTGCGGAGGTTGCTGC
TCATATTGAGGCTGTAACAGAGAAGATCATAATGGAGGAAGAGAAGTGGAAGAAGTGGAA
GACAGAGAACATCAGGAGGAAGCACAACTATGTGCCATTCTTGTTCAATTTCCTCAAGAT
TCTTGAGGAGAGGCAGCAGTTGAAGCCCCTGATAGAGAAGGCGAAACAGAAGTCTCACAG
CTCTGCTAATCCTAGGTGAAATCAACTGTTATTTGTCTCGATTGCCGTGGTTTTTGTCAA
TGTAGAGATGGCTGACTAGCCTTTTGTTTTCGCGGTAGTGTTTGAACCATGTGATGATTA
TTATCTTTAGTTATAGATATTCGGTCGAATTTAGATG