Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0179800-00
CDS Infomation	cds chromosome:IRGSP-1.0:2:4432918:4438267:-1 gene:Os02g0179800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Integrase, N-terminal zinc-binding domain domain containing protein. (Os02t0179800-00)
Sequence	ATGAGTTCCGGGTCGGCGGTGACGGGCGGCGGCGGCGGCGGGGCGGAGGACGCGGCGGCG GTGGCGCTGGGGCAGAAGCTGCCGGTGCACGTGGCGGAGAACGGCCACACCTTCGAGTTC AAGTGCGGCGGCGAGACCCCCGTGGAGGCAATCCAGCGCACCATCGAGGGCCTCTGCGGC ATCCCGCCGGCCGACCAGCTCCTCCTCTGCGGGAACACCTCGCTCGACGGCGCCCACCAT CTCGCCTACTACCAGCTGCCCCGCGACGACCGGGAGGTGTTCCTGTACAACAAGGCCCGG CTCCACGACGGCGCGCCGCGCCCCGCGCCGGAGTCGATCGAAATCCCCCAGCCGTCGATC CCGCCGCCGCCCCGGCCACAGGATTCCCCGCCGCTGGATGTGTCCTCCGACCCGGCGCTG AAGGCCCTGGTGTCCTACGAGACCACGTTCAGATACCACTTCCAGGTGGGGAATGCCGTG TATCAGTCTAGCGTGGCGAAGCACGAGGTGTGCTGCCGGCTGCTGCGGGAGGGGCAGGTG CAGGAGCGGGCACTCGACACCGCCCGGAGCAACCTGGAGCACACGGCCCGGAAGCTCACG CAGCGGTATTCGGATTTCGTCAAGTGCTTCTCGCAGCAGCATCGTGGCCATGCCGAGATG CTGGCGAATTTCGAGAGGGATGTGGAGAGGCTGCGCGCCGTGAGGCTTCACCCGGCGCTG CAATGCGAGGGGAGGCGCTCCTTGATTGACCTCGTTAAGGAGAATGACCTGAGGAAGCTG GCAGATGGGTGCTTCAGCTCACATAAACAGTTTGATGTTAAGGTCTCACAGCACAAGGCC AAATTCATGGAATTGAAGAAGAGGCTTGAAAATTTGTTTAATATTATGAGCTCGACTGGG TGCAAGGATCTTGAGGCGATGATAAAGGAACACGAGAAATTCATCGGTGACCAGAAAATC ATCATGCAGTCTCTAAGTAAAGATGTGACTACTTCAAAAAAGCTTGTTGATGACTGCTCA AACTGCCAGCTTTCTGCATCTCTCCGCCCTCATGATGCGGTTTCTGCAGTTGGCCGCATC TATGAAGTACATGAAAAGGACAACTTGCCCAGTGTCCATAATATCGATCGCTTGTTCACA AAGTTGCTGGAGAAATGCAAAGCCAAGAAGAATGAAATGAATACCTTGGTACATGTTAGC ATGCAAAGGGTCAAATCTGCTCAGATTGTTATCAAGGAAATGATGAACGAACTCCATGCA TTCCAAGAGGTGATGGGTCATCAAGATAAAATTTTCGATAGCCTAAAACTTGCCAGTGGC ATGGGTCATGCGTACAGGGCTTGTCTTGCTGAGGTCGTACGAAGAAAGTCTTCTTTTAAG CTTTATACTGGCTTGGCAGGGCAGCTTGCTGAAAAGCTAGCCACTGAGCGTGAAGCTGAG GTAAGAAGGCGAGAGGCCTTCTTTAGGACATGGAGTAAGTACATTCCAGAAGATATCATG GGTTCCATGGGACTTTTTGATTCCCCAAGCCAGTGCGATGTAACAGTTGCTCCATTTGAT TGCAATCTTCTCTCAATTGATGTTGATGATGTGGAAAAACTTGCACCCCAATCTTTGGTC GGGTCTTTTCTGAAATCTGAGAGATCACAACTGCCAAAGTCCTCCTTGAGCAATTCTGGT ACCAGTGGAAATTTGAGTAAATCCGAGCAATATCCGCCGAATGCTGATGATAAGATGGAT TTCCAAGACTTTCTGGGGGGTTTTGACAGTGTGGATATTGCTGGAACTAGTAAATTGGAA GTTGAAAATGCCAGATTAAAAGCAGAACTTGCTTCTGCAATTGCAGTTCTCTGCAGTTTT GGCGCCGAATATGGATATGAATCTATTGATGAAGGGCAAATTGATAATGTACTGAAAGAT GCAAGGGAAAAAACAGCTGCAGCACTTTCTGCAAAGGATGAGTATGCTAATCACCTGCAG GCAATGCTTACAGCAAAGCAGAATCAAAATTTGTCCTATGAGAAGCGCATCCAGGAGCTT GAGGAGCAATTAGCAAACCAGTACATACAAGGGCACGTGATTTCTGGAAGCAAAGATGCA TCTGATTCCCTCCTTTCTGCATTTAAAGCTAATGACTGCAACTTGCACATATCTGGAGGG AGGCAAACCCAAGTACGCGATGAATCAAGTGTGGCCATGGATGAGGCCTCTTCAACATCT GAGCAGCCATCTAAACAAACAGAAGGTGGGGATGAGAATATGACCGACATTTCAGGTGCA CTGAACTTGCAATTGCTCGATCCAATAGCACGCACTAATTTGGATGCTTTCATGGCAGAA TTGCCACCTGATAGTGAACATAAAATTGTTGATTCTGATAAGGAAGGGCAAGTATTGACA CAGTTTACTACGACTGATACTTCTGGGGTTCCTATAGAAGATCCTCTTGGCATCTTAAAC TCCAGAACTAACGAGCATCATACCTCAGAGCTGAGAAACAAAGAGCTGCTTGTGTCAGAG TTGCAAAGTACTCTGGAAGACAAATCAAAAAGGTTAGATGAAACTGAAAGCAAGCTTAAT GCCTTGGTGGATGAGGTCAACTCTCTGAAGAAAGAACTTGAACACACCCAGGGTCTGCTT GATGAGTCTCAGATGAACTGTGTGCAACTGGAGAACTGCTTACACGAGGCAAGAGAAGAG GCCCGCACAAACAAATGTTCAGCTGACAGAAGGGCTGTTGAGTATGATGCCCTGCGTTCA TCTGCTCTGAGGATACATGGTCTGTTTGAGAGACTAAATAACTGTGTCACTGCACCAGGC ATGTCTGGTTTTGCGGACTCACTGCGTGCTTTAGCTCTCTCATTAGCAAGTGCAAAGAAG GATGAAGGTGATACAACCATTCAGTTTCAGCAATGCATCAAGATCCTGGCAGACAAAGTT GGTTTTCTATCACGACAGAGTGCTGAGCTGCTAGAACGCTACTCAAGGATTGTAAGAGTG TTGGAGGAGAAGAAAGAGTCGATTAAAAATTTGTACAGTAAGCTTCAACTGGAAAAACAG GCTAGTAAGGAGAAGATATCATTCGGCCGTTTCGAAGTTCATGAGCTCGCGGTCTTTGTT CGGAACCCTGCTGGGCATTACGAAGCAATCAACCGGAACTGCTCAAACTACTACCTATCA GAGGAATCAGTGGCCCTATTCACGGAGCAGCATCCACGGCACCCAGCTTACATAATCGGG CAGATTGTGCACATCGAACGGCGCATAGCAAAGCTGCCCTCGCACGGTGACCAGATGGAA GCTTCACGCCTTGATAGCGGTGGCCGCCGGTCGCCCGCTTCCATGCTGAACCCGTACAAT CTGCCTGTGGGATGTGAGTACTTCCTGGTGACGGTCGCGATGATACCTGACAATATTCGT TGA

Peptide Sequence

PEP ID	Os02t0179800-00
PEP Infomation	pep chromosome:IRGSP-1.0:2:4432918:4438267:-1 gene:Os02g0179800 transcript:Os02t0179800-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Integrase, N-terminal zinc-binding domain domain containing protein. (Os02t0179800-00)
Sequence	MSSGSAVTGGGGGGAEDAAAVALGQKLPVHVAENGHTFEFKCGGETPVEAIQRTIEGLCG IPPADQLLLCGNTSLDGAHHLAYYQLPRDDREVFLYNKARLHDGAPRPAPESIEIPQPSI PPPPRPQDSPPLDVSSDPALKALVSYETTFRYHFQVGNAVYQSSVAKHEVCCRLLREGQV QERALDTARSNLEHTARKLTQRYSDFVKCFSQQHRGHAEMLANFERDVERLRAVRLHPAL QCEGRRSLIDLVKENDLRKLADGCFSSHKQFDVKVSQHKAKFMELKKRLENLFNIMSSTG CKDLEAMIKEHEKFIGDQKIIMQSLSKDVTTSKKLVDDCSNCQLSASLRPHDAVSAVGRI YEVHEKDNLPSVHNIDRLFTKLLEKCKAKKNEMNTLVHVSMQRVKSAQIVIKEMMNELHA FQEVMGHQDKIFDSLKLASGMGHAYRACLAEVVRRKSSFKLYTGLAGQLAEKLATEREAE VRRREAFFRTWSKYIPEDIMGSMGLFDSPSQCDVTVAPFDCNLLSIDVDDVEKLAPQSLV GSFLKSERSQLPKSSLSNSGTSGNLSKSEQYPPNADDKMDFQDFLGGFDSVDIAGTSKLE VENARLKAELASAIAVLCSFGAEYGYESIDEGQIDNVLKDAREKTAAALSAKDEYANHLQ AMLTAKQNQNLSYEKRIQELEEQLANQYIQGHVISGSKDASDSLLSAFKANDCNLHISGG RQTQVRDESSVAMDEASSTSEQPSKQTEGGDENMTDISGALNLQLLDPIARTNLDAFMAE LPPDSEHKIVDSDKEGQVLTQFTTTDTSGVPIEDPLGILNSRTNEHHTSELRNKELLVSE LQSTLEDKSKRLDETESKLNALVDEVNSLKKELEHTQGLLDESQMNCVQLENCLHEAREE ARTNKCSADRRAVEYDALRSSALRIHGLFERLNNCVTAPGMSGFADSLRALALSLASAKK DEGDTTIQFQQCIKILADKVGFLSRQSAELLERYSRIVRVLEEKKESIKNLYSKLQLEKQ ASKEKISFGRFEVHELAVFVRNPAGHYEAINRNCSNYYLSEESVALFTEQHPRHPAYIIG QIVHIERRIAKLPSHGDQMEASRLDSGGRRSPASMLNPYNLPVGCEYFLVTVAMIPDNIR

Transcript Sequence

Transcript ID	Os02t0179800-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:4432918:4438267:-1 gene:Os02g0179800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Integrase, N-terminal zinc-binding domain domain containing protein. (Os02t0179800-00)
Sequence	TTGGGTGGGCGCGCCGCGCGTTCTTGCGAGATTGGGTGGTTGGTTTTGATTGTGGTGGTA TGGTAGAAAAACTGCAGATTTAATCTGAACTGCGTTGGGGGGAGTGGAAGAGGAGGAAGA AAGATCGGGTTTCGAGGCGGGGGGGGGGGAGATGAGTTCCGGGTCGGCGGTGACGGGCGG CGGCGGCGGCGGGGCGGAGGACGCGGCGGCGGTGGCGCTGGGGCAGAAGCTGCCGGTGCA CGTGGCGGAGAACGGCCACACCTTCGAGTTCAAGTGCGGCGGCGAGACCCCCGTGGAGGC AATCCAGCGCACCATCGAGGGCCTCTGCGGCATCCCGCCGGCCGACCAGCTCCTCCTCTG CGGGAACACCTCGCTCGACGGCGCCCACCATCTCGCCTACTACCAGCTGCCCCGCGACGA CCGGGAGGTGTTCCTGTACAACAAGGCCCGGCTCCACGACGGCGCGCCGCGCCCCGCGCC GGAGTCGATCGAAATCCCCCAGCCGTCGATCCCGCCGCCGCCCCGGCCACAGGATTCCCC GCCGCTGGATGTGTCCTCCGACCCGGCGCTGAAGGCCCTGGTGTCCTACGAGACCACGTT CAGATACCACTTCCAGGTGGGGAATGCCGTGTATCAGTCTAGCGTGGCGAAGCACGAGGT GTGCTGCCGGCTGCTGCGGGAGGGGCAGGTGCAGGAGCGGGCACTCGACACCGCCCGGAG CAACCTGGAGCACACGGCCCGGAAGCTCACGCAGCGGTATTCGGATTTCGTCAAGTGCTT CTCGCAGCAGCATCGTGGCCATGCCGAGATGCTGGCGAATTTCGAGAGGGATGTGGAGAG GCTGCGCGCCGTGAGGCTTCACCCGGCGCTGCAATGCGAGGGGAGGCGCTCCTTGATTGA CCTCGTTAAGGAGAATGACCTGAGGAAGCTGGCAGATGGGTGCTTCAGCTCACATAAACA GTTTGATGTTAAGGTCTCACAGCACAAGGCCAAATTCATGGAATTGAAGAAGAGGCTTGA AAATTTGTTTAATATTATGAGCTCGACTGGGTGCAAGGATCTTGAGGCGATGATAAAGGA ACACGAGAAATTCATCGGTGACCAGAAAATCATCATGCAGTCTCTAAGTAAAGATGTGAC TACTTCAAAAAAGCTTGTTGATGACTGCTCAAACTGCCAGCTTTCTGCATCTCTCCGCCC TCATGATGCGGTTTCTGCAGTTGGCCGCATCTATGAAGTACATGAAAAGGACAACTTGCC CAGTGTCCATAATATCGATCGCTTGTTCACAAAGTTGCTGGAGAAATGCAAAGCCAAGAA GAATGAAATGAATACCTTGGTACATGTTAGCATGCAAAGGGTCAAATCTGCTCAGATTGT TATCAAGGAAATGATGAACGAACTCCATGCATTCCAAGAGGTGATGGGTCATCAAGATAA AATTTTCGATAGCCTAAAACTTGCCAGTGGCATGGGTCATGCGTACAGGGCTTGTCTTGC TGAGGTCGTACGAAGAAAGTCTTCTTTTAAGCTTTATACTGGCTTGGCAGGGCAGCTTGC TGAAAAGCTAGCCACTGAGCGTGAAGCTGAGGTAAGAAGGCGAGAGGCCTTCTTTAGGAC ATGGAGTAAGTACATTCCAGAAGATATCATGGGTTCCATGGGACTTTTTGATTCCCCAAG CCAGTGCGATGTAACAGTTGCTCCATTTGATTGCAATCTTCTCTCAATTGATGTTGATGA TGTGGAAAAACTTGCACCCCAATCTTTGGTCGGGTCTTTTCTGAAATCTGAGAGATCACA ACTGCCAAAGTCCTCCTTGAGCAATTCTGGTACCAGTGGAAATTTGAGTAAATCCGAGCA ATATCCGCCGAATGCTGATGATAAGATGGATTTCCAAGACTTTCTGGGGGGTTTTGACAG TGTGGATATTGCTGGAACTAGTAAATTGGAAGTTGAAAATGCCAGATTAAAAGCAGAACT TGCTTCTGCAATTGCAGTTCTCTGCAGTTTTGGCGCCGAATATGGATATGAATCTATTGA TGAAGGGCAAATTGATAATGTACTGAAAGATGCAAGGGAAAAAACAGCTGCAGCACTTTC TGCAAAGGATGAGTATGCTAATCACCTGCAGGCAATGCTTACAGCAAAGCAGAATCAAAA TTTGTCCTATGAGAAGCGCATCCAGGAGCTTGAGGAGCAATTAGCAAACCAGTACATACA AGGGCACGTGATTTCTGGAAGCAAAGATGCATCTGATTCCCTCCTTTCTGCATTTAAAGC TAATGACTGCAACTTGCACATATCTGGAGGGAGGCAAACCCAAGTACGCGATGAATCAAG TGTGGCCATGGATGAGGCCTCTTCAACATCTGAGCAGCCATCTAAACAAACAGAAGGTGG GGATGAGAATATGACCGACATTTCAGGTGCACTGAACTTGCAATTGCTCGATCCAATAGC ACGCACTAATTTGGATGCTTTCATGGCAGAATTGCCACCTGATAGTGAACATAAAATTGT TGATTCTGATAAGGAAGGGCAAGTATTGACACAGTTTACTACGACTGATACTTCTGGGGT TCCTATAGAAGATCCTCTTGGCATCTTAAACTCCAGAACTAACGAGCATCATACCTCAGA GCTGAGAAACAAAGAGCTGCTTGTGTCAGAGTTGCAAAGTACTCTGGAAGACAAATCAAA AAGGTTAGATGAAACTGAAAGCAAGCTTAATGCCTTGGTGGATGAGGTCAACTCTCTGAA GAAAGAACTTGAACACACCCAGGGTCTGCTTGATGAGTCTCAGATGAACTGTGTGCAACT GGAGAACTGCTTACACGAGGCAAGAGAAGAGGCCCGCACAAACAAATGTTCAGCTGACAG AAGGGCTGTTGAGTATGATGCCCTGCGTTCATCTGCTCTGAGGATACATGGTCTGTTTGA GAGACTAAATAACTGTGTCACTGCACCAGGCATGTCTGGTTTTGCGGACTCACTGCGTGC TTTAGCTCTCTCATTAGCAAGTGCAAAGAAGGATGAAGGTGATACAACCATTCAGTTTCA GCAATGCATCAAGATCCTGGCAGACAAAGTTGGTTTTCTATCACGACAGAGTGCTGAGCT GCTAGAACGCTACTCAAGGATTGTAAGAGTGTTGGAGGAGAAGAAAGAGTCGATTAAAAA TTTGTACAGTAAGCTTCAACTGGAAAAACAGGCTAGTAAGGAGAAGATATCATTCGGCCG TTTCGAAGTTCATGAGCTCGCGGTCTTTGTTCGGAACCCTGCTGGGCATTACGAAGCAAT CAACCGGAACTGCTCAAACTACTACCTATCAGAGGAATCAGTGGCCCTATTCACGGAGCA GCATCCACGGCACCCAGCTTACATAATCGGGCAGATTGTGCACATCGAACGGCGCATAGC AAAGCTGCCCTCGCACGGTGACCAGATGGAAGCTTCACGCCTTGATAGCGGTGGCCGCCG GTCGCCCGCTTCCATGCTGAACCCGTACAATCTGCCTGTGGGATGTGAGTACTTCCTGGT GACGGTCGCGATGATACCTGACAATATTCGTTGAAAACGCCTTCCTGATCATGCCTATGG CTGCTGAAATGAAGGGAGAAACTCTCAACTGTAAATATACTGAAACTGAAATTTATAGAC TTCCTTGGTTGCTTGTGGCTTCTTCATCCTTTGTACATAATGATGATGATCAGGTTCCTT TGTAAATAGACTCTCAGCTACCACTGATGTTATCATCTTCGTTC