Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0179100-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:4384188:4387935:1 gene:Os02g0179100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Metal-dependent phosphohydrolase, HD region domain containing protein. (Os02t0179100-01)
Sequence

ATGGGTGGGAGCCGAGCCCTTCCCCTCTCCTCCCTCCTCGCCGCCGCCACCAAATCCCCC
CTCCTCCACCACCGCCCCCTCCCGCTCCGCCTCGCCGCCTCCATGTCGTCGTCGTCCCCT
TCCCCCTCTCCCGCTGCTCCGGCCTCCGCCTCCGCCATCGACTTCCTCACGCTCTGCTAC
CGCCTCAAGACGACGAAGAGGGCCGGGTGGGTGAGGCGCGGGGTGCAGGGGCCGGAGTCC
GTCGCCGACCACATGTACCGGATGGGCGTCATGGCGCTCGTCGCCGCCGACCTGCCCAGC
GGCGTGAACCGCGACAGGTGTGTCAAGATGGCGATCGTGCACGACATAGCCGAAGCTATT
GTTGGTGATATCACCCCTTCAGATGGCGTGCCGAAGGAAGAAAAGAGCCGCAGAGAGCAA
GAAGCATTGGACCATATGTGCAGTTTGCTCGGTGGTGGTCCGAGAGCTGAAGAAATCCGT
GAACTTTGGATGGAATATGAGCAGAATGCCACTTTGGAAGCAAAGGTTGTGAAAGATTTT
GACAAGGTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGGAGCAAGGGCTGGACCTA
GAAGAGTTTTTCCAGTCAACAGCAGGGAAATTTCAGACAGACGTTGGAAAAGCATGGGCA
GCAGAGGTAGCATCAAGAAGAAAGTGA

Peptide Sequence

PEP ID

Os02t0179100-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:4384188:4387935:1 gene:Os02g0179100 transcript:Os02t0179100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Metal-dependent phosphohydrolase, HD region domain containing protein. (Os02t0179100-01)
Sequence

MGGSRALPLSSLLAAATKSPLLHHRPLPLRLAASMSSSSPSPSPAAPASASAIDFLTLCY
RLKTTKRAGWVRRGVQGPESVADHMYRMGVMALVAADLPSGVNRDRCVKMAIVHDIAEAI
VGDITPSDGVPKEEKSRREQEALDHMCSLLGGGPRAEEIRELWMEYEQNATLEAKVVKDF
DKVEMILQALEYEKEQGLDLEEFFQSTAGKFQTDVGKAWAAEVASRRK

Transcript Sequence

Transcript ID

Os02t0179100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4384188:4387935:1 gene:Os02g0179100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Metal-dependent phosphohydrolase, HD region domain containing protein. (Os02t0179100-01)
Sequence

ACTCCGCCATTCCCGGACGCCTCCCCACCTCACGCTCCTCCTCCTTCTAATAACCCCAGC
GATGGGTGGGAGCCGAGCCCTTCCCCTCTCCTCCCTCCTCGCCGCCGCCACCAAATCCCC
CCTCCTCCACCACCGCCCCCTCCCGCTCCGCCTCGCCGCCTCCATGTCGTCGTCGTCCCC
TTCCCCCTCTCCCGCTGCTCCGGCCTCCGCCTCCGCCATCGACTTCCTCACGCTCTGCTA
CCGCCTCAAGACGACGAAGAGGGCCGGGTGGGTGAGGCGCGGGGTGCAGGGGCCGGAGTC
CGTCGCCGACCACATGTACCGGATGGGCGTCATGGCGCTCGTCGCCGCCGACCTGCCCAG
CGGCGTGAACCGCGACAGGTGTGTCAAGATGGCGATCGTGCACGACATAGCCGAAGCTAT
TGTTGGTGATATCACCCCTTCAGATGGCGTGCCGAAGGAAGAAAAGAGCCGCAGAGAGCA
AGAAGCATTGGACCATATGTGCAGTTTGCTCGGTGGTGGTCCGAGAGCTGAAGAAATCCG
TGAACTTTGGATGGAATATGAGCAGAATGCCACTTTGGAAGCAAAGGTTGTGAAAGATTT
TGACAAGGTTGAGATGATTCTTCAAGCATTGGAGTATGAAAAGGAGCAAGGGCTGGACCT
AGAAGAGTTTTTCCAGTCAACAGCAGGGAAATTTCAGACAGACGTTGGAAAAGCATGGGC
AGCAGAGGTAGCATCAAGAAGAAAGTGAAATTAACCAATCACATGACATTTGACAGGCCC
CCTTTGGTGTTTCTTTTCCAAAGATAACCTCAAGGTTTCTGTTAAACTTCACCCTTAAAG
ACTTTGTTAGCTCTGGGCCATTTGGACCCGATGCTTAGAGCTTGAGAATTGAGATCAGCT
GGTTTCAGAGGCTAGTTGTTTTTTTTTGCTTAAGCTGGGTTCTTGTAGCTCACCTGCCTG
CCTCCGGGATGCTGATTCACTAGGAAAGCCTTATTGGCCGTCCTCGTTGTTGTGATGTAA
AATCAACTAATTCAGTTTTTATGCCAATCGAGTTTCCTCGTCTC