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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0178700-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:4350872:4351973:1 gene:Os02g0178700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 157 description:Helix-loop-helix DNA-binding domain containing protein. (Os02t0178700-01)
Sequence

ATGAGAGGCCCTAGCACCACCACCATGGCCACCTTCAAGCAAAGCTTCCTCAAGAACCTC
CTCTCGAGCCTCAAAAGCTCCAGCAAAAACAAGGCCGCCATGTCGACCCTGAGTGAGAGG
AAGCGTGCCATCAAGTCCTCCGCCGACATCGCCATGGCCACCGCCCGCACCGGCATCGCC
GGAGCAGCACGGTGGCCACATGCCATCTTGGCATCATCATCATCGTCTTCTTCATCTTCA
TCTTCATCTTCATCGTCATCGTCGATGCCGAGAACTACATTTCCATGCAAGATGATGCAA
GGGAAGGTGAGGAGGAGGTGCAAGAGCATCGTGAGGAGGAGGACGCCATTGATGAGTAGT
AGTAGTGAGGTTGCGAGGAGACTGGTGAAGAAGAGGGACAAGGTGCTGAGGAGGATGATA
CCCGGAGGCGAGCTCATCGCCGACGAGATCTCGCTGCTGCACGAGGCCATGGATTACGTC
GTTCATCTGCACGCCCAGGTCGACGTGCTCCGCCGCGTCTCGAGAGCCGCCGTGGCGCGG
AGATCCAGTGCGTCTTCTTCTTCTTCAGGTGGGCTTGCACAATTGAAGGAACGGACGGTT
CAGATCTCTGGTGAAACGGAGAACCCATGCTAG

Peptide Sequence

PEP ID

Os02t0178700-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:4350872:4351973:1 gene:Os02g0178700 transcript:Os02t0178700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 157 description:Helix-loop-helix DNA-binding domain containing protein. (Os02t0178700-01)
Sequence

MRGPSTTTMATFKQSFLKNLLSSLKSSSKNKAAMSTLSERKRAIKSSADIAMATARTGIA
GAARWPHAILASSSSSSSSSSSSSSSSSMPRTTFPCKMMQGKVRRRCKSIVRRRTPLMSS
SSEVARRLVKKRDKVLRRMIPGGELIADEISLLHEAMDYVVHLHAQVDVLRRVSRAAVAR
RSSASSSSSGGLAQLKERTVQISGETENPC

Transcript Sequence

Transcript ID

Os02t0178700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4350872:4351973:1 gene:Os02g0178700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 157 description:Helix-loop-helix DNA-binding domain containing protein. (Os02t0178700-01)
Sequence

ACCTCTGCCAACCTAGCTTAGCTAGAGCCTAGAGGAGTCATCTCCATTTCTTAGCTTCTC
TCCTCACCAGAAGCCACCATGAGAGGCCCTAGCACCACCACCATGGCCACCTTCAAGCAA
AGCTTCCTCAAGAACCTCCTCTCGAGCCTCAAAAGCTCCAGCAAAAACAAGGCCGCCATG
TCGACCCTGAGTGAGAGGAAGCGTGCCATCAAGTCCTCCGCCGACATCGCCATGGCCACC
GCCCGCACCGGCATCGCCGGAGCAGCACGGTGGCCACATGCCATCTTGGCATCATCATCA
TCGTCTTCTTCATCTTCATCTTCATCTTCATCGTCATCGTCGATGCCGAGAACTACATTT
CCATGCAAGATGATGCAAGGGAAGGTGAGGAGGAGGTGCAAGAGCATCGTGAGGAGGAGG
ACGCCATTGATGAGTAGTAGTAGTGAGGTTGCGAGGAGACTGGTGAAGAAGAGGGACAAG
GTGCTGAGGAGGATGATACCCGGAGGCGAGCTCATCGCCGACGAGATCTCGCTGCTGCAC
GAGGCCATGGATTACGTCGTTCATCTGCACGCCCAGGTCGACGTGCTCCGCCGCGTCTCG
AGAGCCGCCGTGGCGCGGAGATCCAGTGCGTCTTCTTCTTCTTCAGGTGGGCTTGCACAA
TTGAAGGAACGGACGGTTCAGATCTCTGGTGAAACGGAGAACCCATGCTAGATAGTAGGA
TGTGATTCTGAAAAGAGGAGCAAGATGTGTTGCAGATATTGGAGAAATATCCAAGAGGGT
GATCAGATTTATGTCCCTGATCACACTTGATAAGCAAGTGCAGAAGTGCCCGGAGAAATA
GAAGTGGAAGAGTGGTGGAGAGTAATCAAGATTCGTACTGTTCAAAGATGAATGAGAGGA
AATTTGTAAGTTGGTGGTACTAATTGTAGTAGCCACTTTTGTACCAGAAGTAAAAGTGAA
ATTGATTAATTATAATGC