Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0178500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:4334610:4338102:-1 gene:Os02g0178500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DEM2. (Os02t0178500-01)
Sequence

ATGGGAGGCTCGCACAGCCGGGAGGACCTCGACCTCTCCGACTCCGAGGACGACGACTCC
GCCTCCCACGCCTCCGACGCCTCCTCCGACTTCGCCACCCCACCCCCCTCCTCCTCCGCC
AAGCCCAGCGCCGCCAAGTCCTCGGCCGCGGCGGCCACCCCGGCCTCCATCGACGCGATC
GACCGCCACCTCCGCAGCCTCCACCTCAAGTACGCCGAGCCCATCTCCCCCAACCCTAGC
CCCTCCCCCACCTCCGCCGCCGCCCCCGCCGCCCTCAACGCCGTCAAGCTCTACCTCCAC
ATCGGCGGCTCCTCCCCCTCCGCGCGCTGGATCATCTCCGACCGCCTCGCCGCCGCCTCC
TTCGTCCGCGCCGGGGACGACGACGACGACGACGCCCCCTCCTCCGGCCCATGGTGCCTC
GTCGTGGGGTCCAAGATCCGGGCCAGGGTCGGGCCCGAGCTGCAGCTCAAGACGTTCCCC
GCGCAGCGCCGGGTCGACTTCGTCGCCGACGGCGTCTGGGCGCTCAAGTTTCTCCACGCC
GATGGCTACCCGAATTTCTACGCCAAGTACCAGAGCTGCCTGTTCGAGAACAGCTACGGC
GTCGCCGCCACCGATGAGGGCCGCGCCAAGGTGTTCGGGAAGGATTTTGCGGCGTGGGCG
CGCCCGGAGGACGGGGACGAGTCCATCTGGGAGGACGCGACAGACGGGTTTGTGCCGAGC
CCGAGTCGCAGCCCGATGCCGTCGCGTAGCCCCATTCTGAAGCCGCTCATGGAGGACTTG
AGGGAGTATGAGGAGCCAGTGGAGGAAGGTGGAGGGATACAGAGCCTTGCGCTTGGTGCA
TTGGACAACAGTTTCTTGGTTGGTGATTCGGGAATCCAGGTGGTGAGGAATTTCGAGCAT
GGGATACACGGAAAGGGCGTGTCGGTCAAGTTCTCCGGAGGGAGCACAAACTTCTCGACA
CCCAAGAAGGCGCTTCTTATGCGTGCGGAGACAAACATGCTCCTGATGAGCCCGGCAACT
GATGGGAAGCCTCATGCCAAGGGTGTCCATCAGCTGGACATTGAGACCGGAAAGGTCGTC
TCAGAATGGAAATTTGGGAAGGACGGAGCAGATATTAACATGAGGGATATCACAAATGAT
TCCAAGGGTGCGCAAATGGACCCATCAGAGTCTACCTTCTTGGGGCTTGATGACAACAGG
TTATGCCGTTGGGACATGAGGGACCGTCGGGGGATTGTGCAGAACATAGCCAGTGCTACA
GAGTCGCCGGTCCTGCAATGGACACAGGGGCATCAGTTCTCTAGGGGCACCAACTTCCAG
TGTTTCGCGTCAACAGGAGATGGGTCAATTGTTGTTGGTTCACTTGATGGGAAAGTCCGT
CTGTACTCGAAGAGTTCTATGAGAATGGCAAAGACAGCCTTCCCAGGGCTGGGTTCACCA
ATTACTCATGTCGACGTCACCTACGATGGAAAGTGGATCCTCGGAACTACTGACACGTAC
TTGATTCTTATATGCACCATCTTCATTGACAAGGATGGGAAGGAAAAGACAGGGTTTGGA
GGGAGGATGGGCAACAGAATTGCTGCCCCAAGGTTGCTCAAGCTGACCCCGCTTGATTCA
CATCTTGCTGGACAGAATAATATATTCCGTGAAGGGAGGTTCTCATGGGTGACCGAGAAC
GGGAAGCAGGAGAGGCATCTGGTGGCGACGGTGGGGAAGTACAGCGTGGTGTGGAACTTC
CTCCAGGTGAAGAACAGCCACCACGAGTGCTACCAGTGCCAGGAGGGGCTCAAGAGCTGC
TACTGCTACAAGGTGATCCCCAAGGACGAGTCCATCGTCGCCAGCCGCTTCATGCACGAG
AAGTACGCCGTCAGCGACACCCCGGAGGCGCCGCTGGTGGTGGCCACCCCCATGAAGGTC
ACCTCCTTCAGCATCTCCAGCAAGCACTAG

Peptide Sequence

PEP ID

Os02t0178500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:4334610:4338102:-1 gene:Os02g0178500 transcript:Os02t0178500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DEM2. (Os02t0178500-01)
Sequence

MGGSHSREDLDLSDSEDDDSASHASDASSDFATPPPSSSAKPSAAKSSAAAATPASIDAI
DRHLRSLHLKYAEPISPNPSPSPTSAAAPAALNAVKLYLHIGGSSPSARWIISDRLAAAS
FVRAGDDDDDDAPSSGPWCLVVGSKIRARVGPELQLKTFPAQRRVDFVADGVWALKFLHA
DGYPNFYAKYQSCLFENSYGVAATDEGRAKVFGKDFAAWARPEDGDESIWEDATDGFVPS
PSRSPMPSRSPILKPLMEDLREYEEPVEEGGGIQSLALGALDNSFLVGDSGIQVVRNFEH
GIHGKGVSVKFSGGSTNFSTPKKALLMRAETNMLLMSPATDGKPHAKGVHQLDIETGKVV
SEWKFGKDGADINMRDITNDSKGAQMDPSESTFLGLDDNRLCRWDMRDRRGIVQNIASAT
ESPVLQWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKVRLYSKSSMRMAKTAFPGLGSP
ITHVDVTYDGKWILGTTDTYLILICTIFIDKDGKEKTGFGGRMGNRIAAPRLLKLTPLDS
HLAGQNNIFREGRFSWVTENGKQERHLVATVGKYSVVWNFLQVKNSHHECYQCQEGLKSC
YCYKVIPKDESIVASRFMHEKYAVSDTPEAPLVVATPMKVTSFSISSKH

Transcript Sequence

Transcript ID

Os02t0178500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4334610:4338102:-1 gene:Os02g0178500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to DEM2. (Os02t0178500-01)
Sequence

CCATTTCCTTCCGCTCCCAAATTTCAAATTCCCTCCCCTTCCCCCTCCCCCTCCCCCTCC
TCGCCGAAACCCTAATCGCCGCCGCCGCCGCCATGGGAGGCTCGCACAGCCGGGAGGACC
TCGACCTCTCCGACTCCGAGGACGACGACTCCGCCTCCCACGCCTCCGACGCCTCCTCCG
ACTTCGCCACCCCACCCCCCTCCTCCTCCGCCAAGCCCAGCGCCGCCAAGTCCTCGGCCG
CGGCGGCCACCCCGGCCTCCATCGACGCGATCGACCGCCACCTCCGCAGCCTCCACCTCA
AGTACGCCGAGCCCATCTCCCCCAACCCTAGCCCCTCCCCCACCTCCGCCGCCGCCCCCG
CCGCCCTCAACGCCGTCAAGCTCTACCTCCACATCGGCGGCTCCTCCCCCTCCGCGCGCT
GGATCATCTCCGACCGCCTCGCCGCCGCCTCCTTCGTCCGCGCCGGGGACGACGACGACG
ACGACGCCCCCTCCTCCGGCCCATGGTGCCTCGTCGTGGGGTCCAAGATCCGGGCCAGGG
TCGGGCCCGAGCTGCAGCTCAAGACGTTCCCCGCGCAGCGCCGGGTCGACTTCGTCGCCG
ACGGCGTCTGGGCGCTCAAGTTTCTCCACGCCGATGGCTACCCGAATTTCTACGCCAAGT
ACCAGAGCTGCCTGTTCGAGAACAGCTACGGCGTCGCCGCCACCGATGAGGGCCGCGCCA
AGGTGTTCGGGAAGGATTTTGCGGCGTGGGCGCGCCCGGAGGACGGGGACGAGTCCATCT
GGGAGGACGCGACAGACGGGTTTGTGCCGAGCCCGAGTCGCAGCCCGATGCCGTCGCGTA
GCCCCATTCTGAAGCCGCTCATGGAGGACTTGAGGGAGTATGAGGAGCCAGTGGAGGAAG
GTGGAGGGATACAGAGCCTTGCGCTTGGTGCATTGGACAACAGTTTCTTGGTTGGTGATT
CGGGAATCCAGGTGGTGAGGAATTTCGAGCATGGGATACACGGAAAGGGCGTGTCGGTCA
AGTTCTCCGGAGGGAGCACAAACTTCTCGACACCCAAGAAGGCGCTTCTTATGCGTGCGG
AGACAAACATGCTCCTGATGAGCCCGGCAACTGATGGGAAGCCTCATGCCAAGGGTGTCC
ATCAGCTGGACATTGAGACCGGAAAGGTCGTCTCAGAATGGAAATTTGGGAAGGACGGAG
CAGATATTAACATGAGGGATATCACAAATGATTCCAAGGGTGCGCAAATGGACCCATCAG
AGTCTACCTTCTTGGGGCTTGATGACAACAGGTTATGCCGTTGGGACATGAGGGACCGTC
GGGGGATTGTGCAGAACATAGCCAGTGCTACAGAGTCGCCGGTCCTGCAATGGACACAGG
GGCATCAGTTCTCTAGGGGCACCAACTTCCAGTGTTTCGCGTCAACAGGAGATGGGTCAA
TTGTTGTTGGTTCACTTGATGGGAAAGTCCGTCTGTACTCGAAGAGTTCTATGAGAATGG
CAAAGACAGCCTTCCCAGGGCTGGGTTCACCAATTACTCATGTCGACGTCACCTACGATG
GAAAGTGGATCCTCGGAACTACTGACACGTACTTGATTCTTATATGCACCATCTTCATTG
ACAAGGATGGGAAGGAAAAGACAGGGTTTGGAGGGAGGATGGGCAACAGAATTGCTGCCC
CAAGGTTGCTCAAGCTGACCCCGCTTGATTCACATCTTGCTGGACAGAATAATATATTCC
GTGAAGGGAGGTTCTCATGGGTGACCGAGAACGGGAAGCAGGAGAGGCATCTGGTGGCGA
CGGTGGGGAAGTACAGCGTGGTGTGGAACTTCCTCCAGGTGAAGAACAGCCACCACGAGT
GCTACCAGTGCCAGGAGGGGCTCAAGAGCTGCTACTGCTACAAGGTGATCCCCAAGGACG
AGTCCATCGTCGCCAGCCGCTTCATGCACGAGAAGTACGCCGTCAGCGACACCCCGGAGG
CGCCGCTGGTGGTGGCCACCCCCATGAAGGTCACCTCCTTCAGCATCTCCAGCAAGCACT
AGCATCTCGCCTTTCTGCTACGACATTTGGCGGTTTGTCGTCCGTCCCATATGTTGTCTT
GTAACACTCACTACAGATGAACCGTGTGCCCTTTGGTTTGCCTTTAACCTCTCTTCTTTT
CTTTTCTTTTTTACCTTTGTTTTTTTACATTATATAAGTACGATGATGATCATCATCAAT
TCAGCATCATCGTCTATGGGTTGTGCTTTTGTTTTTCAAGTACGATGATAATCATCATCG
TCATGAGTTGTGCCCAGGTTTCTATGTACTCCATATATTGTAGTATTGACG