Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0177700-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:4286999:4288829:-1 gene:Os02g0177700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os02t0177700-01)
Sequence

ATGGCGGCGACGACGGCGGCGGCGGCGGTGCCGGGGGTGGTGAGGGCGGAGAGGCTCCTG
CGCGGCGGGTGCGTGGTGATGGCGGCGACGGCGGCGCTGCTCCTCGGGTTCAGCGCCGAG
ACCAAGACGGTGCTCTTCGTCCGCAAGACCGCCGTCGCCAAGGACGTCCAAGCCCTCTGG
GTGCTCACCGTGGCGGCGGCGGCGGCGGCGGGGTACCAATTCGCGCAGCTCGTCAGGTGC
ATGTACTGCTCCTCCTCCGGCGACGCCGGCGCCATGGCGGTGGCGTGGACATCTTTCCTG
CTCGACAAGGGATGCGCGTACGTGGTGTTCGCGAGCACGGCGGCGGCGCTGCAGGCGTGT
ATGGTGGGGCTGATCGGCGTGGAGGCCTTGCAGTGGAGCAAGCTCTGCAACATCTACACC
CGCTTCTGCGAGCAGGCCGCCGCCGGCATGCTCTGCAGCTTCCTCGCCGCCGCCGGCATG
GCCGTCCTCTCCGCCTTCTCCGCCCGCCGCCTCTTCCGCCTCTACTCGCCGGCCGGCCAC
CGCCGCAGCTGCCCGCGCGCGGCAGTACTAGCTACCTCTCCGCACTAG

Peptide Sequence

PEP ID

Os02t0177700-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:4286999:4288829:-1 gene:Os02g0177700 transcript:Os02t0177700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os02t0177700-01)
Sequence

MAATTAAAAVPGVVRAERLLRGGCVVMAATAALLLGFSAETKTVLFVRKTAVAKDVQALW
VLTVAAAAAAGYQFAQLVRCMYCSSSGDAGAMAVAWTSFLLDKGCAYVVFASTAAALQAC
MVGLIGVEALQWSKLCNIYTRFCEQAAAGMLCSFLAAAGMAVLSAFSARRLFRLYSPAGH
RRSCPRAAVLATSPH

Transcript Sequence

Transcript ID

Os02t0177700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4286999:4288829:-1 gene:Os02g0177700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os02t0177700-01)
Sequence

CAACGGCGCCACGCCACCAACCTCCGATCGATCGATCGATCGAGCATAGCTAGTCGCTGT
CCGATCCTGCAGCCATGGCGGCGACGACGGCGGCGGCGGCGGTGCCGGGGGTGGTGAGGG
CGGAGAGGCTCCTGCGCGGCGGGTGCGTGGTGATGGCGGCGACGGCGGCGCTGCTCCTCG
GGTTCAGCGCCGAGACCAAGACGGTGCTCTTCGTCCGCAAGACCGCCGTCGCCAAGGACG
TCCAAGCCCTCTGGGTGCTCACCGTGGCGGCGGCGGCGGCGGCGGGGTACCAATTCGCGC
AGCTCGTCAGGTGCATGTACTGCTCCTCCTCCGGCGACGCCGGCGCCATGGCGGTGGCGT
GGACATCTTTCCTGCTCGACAAGGGATGCGCGTACGTGGTGTTCGCGAGCACGGCGGCGG
CGCTGCAGGCGTGTATGGTGGGGCTGATCGGCGTGGAGGCCTTGCAGTGGAGCAAGCTCT
GCAACATCTACACCCGCTTCTGCGAGCAGGCCGCCGCCGGCATGCTCTGCAGCTTCCTCG
CCGCCGCCGGCATGGCCGTCCTCTCCGCCTTCTCCGCCCGCCGCCTCTTCCGCCTCTACT
CGCCGGCCGGCCACCGCCGCAGCTGCCCGCGCGCGGCAGTACTAGCTACCTCTCCGCACT
AGAAATCTCTAATTCTAGAGATAGAGATGAATCTGAATATAAGTATGTTCAGATACATCT
CAGAATTATAGCTACTAGCTATAGGAGGCCAGCAAGTACATATGTAATTTGAAGCTACGT
ATGGCTGCTTTTTAGCAACGTCTGACATTGCAGACTATGTAAGTTTTCAGATAATGGAAG
AGCAAAAATAAAAAAGTTATGAACTCC