Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0177600-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:4280502:4285929:1 gene:Os02g0177600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-COUMARATE:COENZYME A LIGASE 3 description:4-coumarate:coenzyme A ligase, Lignin biosynthesis, Defense against wounding (Os02t0177600-01)
Sequence	ATGGGGTCGGTGGCGGCGGAGGAGGTGGTGGTGTTCCGGTCGAAGCTGCCGGACATCGAG ATCGACAACAGCATGACGCTGCAGGAGTACTGCTTCGCGAGGATGGCGGAGGTCGGGGCG CGGCCGTGCCTGATCGACGGGCAGACCGGGGAGTCGTACACGTACGCGGAGGTGGAGTCC GCGTCGCGGCGCGCCGCGGCGGGGCTCCGGCGGATGGGGGTGGGCAAGGGCGACGTGGTG ATGAGCCTCCTCCGCAACTGCCCCGAGTTCGCCTTCTCCTTCCTCGGCGCGGCCAGGCTG GGCGCCGCCACCACGACGGCGAACCCGTTCTACACGCCGCACGAGGTCCACCGCCAGGCG GAGGCCGCGGGCGCCAGGGTGATCGTCACCGAGGCGTGCGCCGTCGAGAAGGTGCGGGAG TTCGCCGCGGAGAGGGGCGTCCCCGTGGTCACCGTGGACGGCGCGTTCGACGGCTGCGTG GAGTTCCGCGAGGTGCTCGCCGCGGAGGAGCTCGACGCCGACGCCGACGTCCACCCCGAC GACGTCGTCGCCCTCCCCTACTCCTCCGGCACCACCGGCCTCCCCAAGGGCGTCATGCTC ACCCACCGCAGCCTCATCACCAGCGTCGCCCAGCAGGTGGATGGAGAGAACCCTAACCTG TACTTCAGCAAGGATGATGTTATACTATGCCTGCTGCCACTGTTCCACATCTACTCGCTC AACTCCGTGCTGCTGGCTGGCCTGCGTGCCGGGTCGACCATCGTGATCATGCGGAAGTTT GATCTTGGCGCGCTCGTCGACCTTGTGCGCAAGCACAACATCACCATCGCCCCCTTCGTG CCCCCCATCGTGGTGGAGATCGCCAAGAGCCCCCGCGTCACCGCGGAGGACCTCGCCTCC ATCCGCATGGTCATGTCCGGTGCCGCGCCCATGGGGAAGGACCTTCAGGATGCATTCATG GCCAAGATCCCCAATGCCGTCCTCGGACAGGGTTACGGTATGACTGAGGCTGGGCCAGTG CTGGCAATGTGCCTGGCGTTTGCCAAGGAGCCCTTCAAGGTTAAGTCCGGGTCGTGCGGT ACAGTGGTGCGCAACGCGGAGCTGAAGATCGTCGACCCCGACACCGGCACCTCCCTCGGC CGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAGGCTATCTGAAT GATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGTGGCTGCACACCGGAGACATC GGCTTCGTCGACGACGACGACGAGATCTTCATCGTGGACAGGCTCAAGGAGATCATCAAG TACAAGGGGTTCCAGGTGCCACCGGCCGAGCTGGAGGCGCTGCTCATCACTCACCCGGAG ATCAAGGACGCCGCCGTCGTCTCGATGAAGGATGATCTTGCCGGTGAAGTGCCAGTCGCC TTCATTGTCCGGACAGAAGGCTCAGAAATCACCGAGGATGAGATCAAGAAATTCGTTGCA AAAGAGGTGGTGTTCTACAAGAGGATCAACAAGGTGTTCTTCACCGATTCCATCCCCAAG AACCCTTCCGGCAAGATCCTCAGGAAGGACTTGAGAGCCAGGCTCGCCGCCGGCATCCCC GACGCCGTCGCCGCCGCCGCCGCCGATGCGCCCAAAAGCAGCTAA

Peptide Sequence

PEP ID	Os02t0177600-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:4280502:4285929:1 gene:Os02g0177600 transcript:Os02t0177600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-COUMARATE:COENZYME A LIGASE 3 description:4-coumarate:coenzyme A ligase, Lignin biosynthesis, Defense against wounding (Os02t0177600-01)
Sequence	MGSVAAEEVVVFRSKLPDIEIDNSMTLQEYCFARMAEVGARPCLIDGQTGESYTYAEVES ASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGAATTTANPFYTPHEVHRQA EAAGARVIVTEACAVEKVREFAAERGVPVVTVDGAFDGCVEFREVLAAEELDADADVHPD DVVALPYSSGTTGLPKGVMLTHRSLITSVAQQVDGENPNLYFSKDDVILCLLPLFHIYSL NSVLLAGLRAGSTIVIMRKFDLGALVDLVRKHNITIAPFVPPIVVEIAKSPRVTAEDLAS IRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTEAGPVLAMCLAFAKEPFKVKSGSCG TVVRNAELKIVDPDTGTSLGRNQSGEICIRGEQIMKGYLNDPEATKNTIDEDGWLHTGDI GFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPVA FIVRTEGSEITEDEIKKFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDLRARLAAGIP DAVAAAAADAPKSS

Transcript Sequence

Transcript ID	Os02t0177600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:4280502:4285929:1 gene:Os02g0177600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-COUMARATE:COENZYME A LIGASE 3 description:4-coumarate:coenzyme A ligase, Lignin biosynthesis, Defense against wounding (Os02t0177600-01)
Sequence	AGGAGACCTCGCCGCCGATCGATCAATCGCCGCCGCCGTCTCCTCGTGTAACCCTAGCTT AGTGGATTAGTTTAAGTGTTTGCCGGAGATTATGGGGTCGGTGGCGGCGGAGGAGGTGGT GGTGTTCCGGTCGAAGCTGCCGGACATCGAGATCGACAACAGCATGACGCTGCAGGAGTA CTGCTTCGCGAGGATGGCGGAGGTCGGGGCGCGGCCGTGCCTGATCGACGGGCAGACCGG GGAGTCGTACACGTACGCGGAGGTGGAGTCCGCGTCGCGGCGCGCCGCGGCGGGGCTCCG GCGGATGGGGGTGGGCAAGGGCGACGTGGTGATGAGCCTCCTCCGCAACTGCCCCGAGTT CGCCTTCTCCTTCCTCGGCGCGGCCAGGCTGGGCGCCGCCACCACGACGGCGAACCCGTT CTACACGCCGCACGAGGTCCACCGCCAGGCGGAGGCCGCGGGCGCCAGGGTGATCGTCAC CGAGGCGTGCGCCGTCGAGAAGGTGCGGGAGTTCGCCGCGGAGAGGGGCGTCCCCGTGGT CACCGTGGACGGCGCGTTCGACGGCTGCGTGGAGTTCCGCGAGGTGCTCGCCGCGGAGGA GCTCGACGCCGACGCCGACGTCCACCCCGACGACGTCGTCGCCCTCCCCTACTCCTCCGG CACCACCGGCCTCCCCAAGGGCGTCATGCTCACCCACCGCAGCCTCATCACCAGCGTCGC CCAGCAGGTGGATGGAGAGAACCCTAACCTGTACTTCAGCAAGGATGATGTTATACTATG CCTGCTGCCACTGTTCCACATCTACTCGCTCAACTCCGTGCTGCTGGCTGGCCTGCGTGC CGGGTCGACCATCGTGATCATGCGGAAGTTTGATCTTGGCGCGCTCGTCGACCTTGTGCG CAAGCACAACATCACCATCGCCCCCTTCGTGCCCCCCATCGTGGTGGAGATCGCCAAGAG CCCCCGCGTCACCGCGGAGGACCTCGCCTCCATCCGCATGGTCATGTCCGGTGCCGCGCC CATGGGGAAGGACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACA GGGTTACGGTATGACTGAGGCTGGGCCAGTGCTGGCAATGTGCCTGGCGTTTGCCAAGGA GCCCTTCAAGGTTAAGTCCGGGTCGTGCGGTACAGTGGTGCGCAACGCGGAGCTGAAGAT CGTCGACCCCGACACCGGCACCTCCCTCGGCCGGAACCAGTCCGGCGAGATCTGCATCCG CGGAGAACAGATCATGAAAGGCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGA CGAGGACGGGTGGCTGCACACCGGAGACATCGGCTTCGTCGACGACGACGACGAGATCTT CATCGTGGACAGGCTCAAGGAGATCATCAAGTACAAGGGGTTCCAGGTGCCACCGGCCGA GCTGGAGGCGCTGCTCATCACTCACCCGGAGATCAAGGACGCCGCCGTCGTCTCGATGAA GGATGATCTTGCCGGTGAAGTGCCAGTCGCCTTCATTGTCCGGACAGAAGGCTCAGAAAT CACCGAGGATGAGATCAAGAAATTCGTTGCAAAAGAGGTGGTGTTCTACAAGAGGATCAA CAAGGTGTTCTTCACCGATTCCATCCCCAAGAACCCTTCCGGCAAGATCCTCAGGAAGGA CTTGAGAGCCAGGCTCGCCGCCGGCATCCCCGACGCCGTCGCCGCCGCCGCCGCCGATGC GCCCAAAAGCAGCTAAGGCCAACGCCGACGTTTTCTCTATTTTCAGTCACACAACCGGTG AAAAAAAAATGCAGAGATATGATGTTGCTGTCCATGAAAATGGAGGCAGAAATGGAGCAG AGGAAGTTTATAGTTTGGTTTGTTGGTTGGTTGATGCTGCTGCAGCAGCTTGTGCAATGT TCATAAAATGGCATTAATAATATTATTATTATTATTATACATAGATGATGTATTGTTTTT GACCATAAGAACAAGGCTGATTACAAAATAATACAGTGTATTAATTACGCCCTGTTTCTC TCT