Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0176900-00
CDS Infomation

cds chromosome:IRGSP-1.0:2:4220950:4223647:-1 gene:Os02g0176900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to apospory-associated protein C. (Os02t0176900-00)
Sequence

ATGGCCGGCGGGGTGTCGTCCGTGGAGGTCGTGAAGGACGGCGCCACTGGGCTGGAGAAG
CTCGTCCTGCGCGAGGCCCATGGCTGCTCCGTCCAGGTATTTCTGTACGGAGGCCAAGTG
ATCTTTTGGGAAAATGAATATCGAGAACAACTGCTCTTTGTTAGTAGAAAGGCTTATTTC
AAACCACCAAAGGCTATTCGTGGGGGCATACAAATTTGCTTTCCTCAATTTGGGAACCAT
GGAGTTCTTGAACAACATGGATTTGCAAGGAACCGATTATGGAGTGTTGATGAAACTCCC
CCTCCTTTTCCAGCTACCACTTCAAACTGTCATATTGACTTGATACTCAAGCAGTCCCCA
GAAGATTTGAAGATCTGGCCGCATAGTTTTGAGTTTAGGCTGCGAGTTGCTCTTAGCCCT
ACAGGAGATCTGATGCTCACATCTCGAATAAAAAATACCAATGCAGATGGGAAGCCATTC
AAATTTGGATTTTCATATAACACATATTTTTCAGTCTCTGACATCAGTGAAGTACGGGTT
GAGGGTTTGGAGACCTTGGACTACATTGACAACCTGCAATGTGGAAAACGTTGTACTGAA
CAAGGAGATGCCGTTGTATTCGAATCTGAAGCGGAGAAGGTATATTTGAGTGCTCCACCC
AAGATTGTGATCATTGACCATGACAAGAAGAGAACTTTTGAGTTAAGGAAAGAGGGACTT
CCTGATGTTGTTGTTTGGAACCCATGGGACAGGAAAGCAAAAACGATACTGGATTTTGGG
GAGGAAGAGTACAAATGCATGCTATGTGTAGGGGCTGCAAATGCTGAGAAGCCAATTACA
TTAAGGCCTGGTGAAGAGTGGCAAGGAAGGCAAGAGATATCTGTTGTTCCATCCAGTTAC
AGCAGCGGACAATGGGATCCTGAAATAATTCATCGGATACAGGACATCTGA

Peptide Sequence

PEP ID

Os02t0176900-00
PEP Infomation

pep chromosome:IRGSP-1.0:2:4220950:4223647:-1 gene:Os02g0176900 transcript:Os02t0176900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to apospory-associated protein C. (Os02t0176900-00)
Sequence

MAGGVSSVEVVKDGATGLEKLVLREAHGCSVQVFLYGGQVIFWENEYREQLLFVSRKAYF
KPPKAIRGGIQICFPQFGNHGVLEQHGFARNRLWSVDETPPPFPATTSNCHIDLILKQSP
EDLKIWPHSFEFRLRVALSPTGDLMLTSRIKNTNADGKPFKFGFSYNTYFSVSDISEVRV
EGLETLDYIDNLQCGKRCTEQGDAVVFESEAEKVYLSAPPKIVIIDHDKKRTFELRKEGL
PDVVVWNPWDRKAKTILDFGEEEYKCMLCVGAANAEKPITLRPGEEWQGRQEISVVPSSY
SSGQWDPEIIHRIQDI

Transcript Sequence

Transcript ID

Os02t0176900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4220950:4223647:-1 gene:Os02g0176900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to apospory-associated protein C. (Os02t0176900-00)
Sequence

CGCCGGTTTCCGTTTCCTCCCCGGCGGCGGCGGCGGCGGCTAGGATCGATGGCCGGCGGG
GTGTCGTCCGTGGAGGTCGTGAAGGACGGCGCCACTGGGCTGGAGAAGCTCGTCCTGCGC
GAGGCCCATGGCTGCTCCGTCCAGGTATTTCTGTACGGAGGCCAAGTGATCTTTTGGGAA
AATGAATATCGAGAACAACTGCTCTTTGTTAGTAGAAAGGCTTATTTCAAACCACCAAAG
GCTATTCGTGGGGGCATACAAATTTGCTTTCCTCAATTTGGGAACCATGGAGTTCTTGAA
CAACATGGATTTGCAAGGAACCGATTATGGAGTGTTGATGAAACTCCCCCTCCTTTTCCA
GCTACCACTTCAAACTGTCATATTGACTTGATACTCAAGCAGTCCCCAGAAGATTTGAAG
ATCTGGCCGCATAGTTTTGAGTTTAGGCTGCGAGTTGCTCTTAGCCCTACAGGAGATCTG
ATGCTCACATCTCGAATAAAAAATACCAATGCAGATGGGAAGCCATTCAAATTTGGATTT
TCATATAACACATATTTTTCAGTCTCTGACATCAGTGAAGTACGGGTTGAGGGTTTGGAG
ACCTTGGACTACATTGACAACCTGCAATGTGGAAAACGTTGTACTGAACAAGGAGATGCC
GTTGTATTCGAATCTGAAGCGGAGAAGGTATATTTGAGTGCTCCACCCAAGATTGTGATC
ATTGACCATGACAAGAAGAGAACTTTTGAGTTAAGGAAAGAGGGACTTCCTGATGTTGTT
GTTTGGAACCCATGGGACAGGAAAGCAAAAACGATACTGGATTTTGGGGAGGAAGAGTAC
AAATGCATGCTATGTGTAGGGGCTGCAAATGCTGAGAAGCCAATTACATTAAGGCCTGGT
GAAGAGTGGCAAGGAAGGCAAGAGATATCTGTTGTTCCATCCAGTTACAGCAGCGGACAA
TGGGATCCTGAAATAATTCATCGGATACAGGACATCTGA