Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0175500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:4129142:4133817:1 gene:Os02g0175500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF266, plant family protein. (Os02t0175500-01)
Sequence

ATGAAGGCATCGCAGGTGTGGCAACGGGGCAGCAAGGACATGACAGCCATGCCCCCTCCG
CGCCAACGAGGCGCCGCCAAGAAGCCCATGTGGATAATCGTGCTGCTGTCGCTGGTGTGC
GTCGCGCTCATCGGGGCCTACGCGTACCCTCCGCGCCGCTACTCCGCGTGCTACTTCTTC
GCTTCGAGCGTCTGCACTCCTTTCAAGGATTGGCTCCCTACTGTGACCCGACGGGAGCGA
ACAGACGAAGAGATCGTCTCGTCTGTTGTTATGAGGGATCTCCTTGCAATGCCCATGCCT
GTCTCGAAGAATCCAAAGATTGCCTTGATGTTCTTAACACCAGGTTCATTGCCCTTTGAG
AAACTATGGGAGAAATTTCTACAGGGTCATGAGGATCGATATTCCATTTATATCCATGCA
TCGCGTGAAAGACCTGTACATTCTAGTTCTTTGTTTGTTGGCCGAGAGATTCATAGTGAA
AAGGTTGTATGGGGGAGGATTTCAATGGTTGATGCGGAGAAGAGGCTGCTAGCAAATGCA
TTGGAAGATGTTGATAATCAATTTTTCGTCTTGCTATCGGACAGCTGTGTTCCACTACAT
ACATTTGATTACATATATAATTTTTTGATGGGAACAAACGTCAGCTTCATTGATTGCTTC
CTTGATCCTGGACCACATGGAAGCGGAAGGTATTCTGTGGAAATGCTCCCTGAAATAGAA
CAGAGGGACTTCAGGAAGGGTGCCCAGTGGTTTGCTGTAACACGAAGGCATGCTTTACTG
ATTTTAGCAGACCACCTTTACTACAATAAGTTCGAGCTGTATTGCAAGCCAGCAGAGGGA
CGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAATATGGTAGATCCTGGT
GGAATCTCTAATTGGTCAGTGACACATGTTGATTGGTCTGAAGGAAAATGGCATCCAAGG
TCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACGGCTATCAAAGAG
AACTTCCGTATTACAAGTGATGATAAGAAAGTTGTGACAATGACACCCTGTATGTGGAAC
GGAACAAAGAGACCATGCTACCTTTTTGCTAGAAAGTTTTACCCAGAAGCTCTCAACAAC
CTACTGAAGCACTCCAGCTACACGTCCACTTGA

Peptide Sequence

PEP ID

Os02t0175500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:4129142:4133817:1 gene:Os02g0175500 transcript:Os02t0175500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF266, plant family protein. (Os02t0175500-01)
Sequence

MKASQVWQRGSKDMTAMPPPRQRGAAKKPMWIIVLLSLVCVALIGAYAYPPRRYSACYFF
ASSVCTPFKDWLPTVTRRERTDEEIVSSVVMRDLLAMPMPVSKNPKIALMFLTPGSLPFE
KLWEKFLQGHEDRYSIYIHASRERPVHSSSLFVGREIHSEKVVWGRISMVDAEKRLLANA
LEDVDNQFFVLLSDSCVPLHTFDYIYNFLMGTNVSFIDCFLDPGPHGSGRYSVEMLPEIE
QRDFRKGAQWFAVTRRHALLILADHLYYNKFELYCKPAEGRNCIADEHYLPTLFNMVDPG
GISNWSVTHVDWSEGKWHPRSYRAIDVTYALLKNITAIKENFRITSDDKKVVTMTPCMWN
GTKRPCYLFARKFYPEALNNLLKHSSYTST

Transcript Sequence

Transcript ID

Os02t0175500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4129142:4133817:1 gene:Os02g0175500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF266, plant family protein. (Os02t0175500-01)
Sequence

AGATGATCTGACCAAGAGGAGAAGAAGAAGAGAGAGGATCCCAACCCCACCACCTCTCCT
CCTCCTCCTCTCTCTCTCTCCGATCTGCCTCGCCGCCGCCGCGGCTGCTCTTCTCCTCTC
GCCTCGCCTCGTGCGCGCGGCGAGTTCGACCTCCTCCTCCTCCTCTCCGAGCCCCCGCCT
CCCCTGGCTGCGGGCGGGGGGTTTCGAGGGGGTGGACGCGGCCTCCGTGTCGGCTTCGGC
TCGGATCGAATTCAAAGAAGAGGTTGGAAACCTTGGTGGTGTAGTTAGTGCCACCGCCCC
TGTCTGGAGTGGCATGTAGTTTTCGCAAGGCTTTGTTTATGATTTTGTCGATGGCGAGGA
GATGAAGGCATCGCAGGTGTGGCAACGGGGCAGCAAGGACATGACAGCCATGCCCCCTCC
GCGCCAACGAGGCGCCGCCAAGAAGCCCATGTGGATAATCGTGCTGCTGTCGCTGGTGTG
CGTCGCGCTCATCGGGGCCTACGCGTACCCTCCGCGCCGCTACTCCGCGTGCTACTTCTT
CGCTTCGAGCGTCTGCACTCCTTTCAAGGATTGGCTCCCTACTGTGACCCGACGGGAGCG
AACAGACGAAGAGATCGTCTCGTCTGTTGTTATGAGGGATCTCCTTGCAATGCCCATGCC
TGTCTCGAAGAATCCAAAGATTGCCTTGATGTTCTTAACACCAGGTTCATTGCCCTTTGA
GAAACTATGGGAGAAATTTCTACAGGGTCATGAGGATCGATATTCCATTTATATCCATGC
ATCGCGTGAAAGACCTGTACATTCTAGTTCTTTGTTTGTTGGCCGAGAGATTCATAGTGA
AAAGGTTGTATGGGGGAGGATTTCAATGGTTGATGCGGAGAAGAGGCTGCTAGCAAATGC
ATTGGAAGATGTTGATAATCAATTTTTCGTCTTGCTATCGGACAGCTGTGTTCCACTACA
TACATTTGATTACATATATAATTTTTTGATGGGAACAAACGTCAGCTTCATTGATTGCTT
CCTTGATCCTGGACCACATGGAAGCGGAAGGTATTCTGTGGAAATGCTCCCTGAAATAGA
ACAGAGGGACTTCAGGAAGGGTGCCCAGTGGTTTGCTGTAACACGAAGGCATGCTTTACT
GATTTTAGCAGACCACCTTTACTACAATAAGTTCGAGCTGTATTGCAAGCCAGCAGAGGG
ACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAATATGGTAGATCCTGG
TGGAATCTCTAATTGGTCAGTGACACATGTTGATTGGTCTGAAGGAAAATGGCATCCAAG
GTCGTATAGAGCTATTGATGTTACCTATGCACTCTTGAAGAACATAACGGCTATCAAAGA
GAACTTCCGTATTACAAGTGATGATAAGAAAGTTGTGACAATGACACCCTGTATGTGGAA
CGGAACAAAGAGACCATGCTACCTTTTTGCTAGAAAGTTTTACCCAGAAGCTCTCAACAA
CCTACTGAAGCACTCCAGCTACACGTCCACTTGAGCTCTACACGATTCTTTGCTTTTGGC
CTAGGAATTCCCTAGGATTTATTTCTTCTTCTATTTTATGTAAATTGTGAAATTGATATT
TAGCTGCGTAACACAGATTCAGGGCCAGAGACATATCAACGTTGCTGCGGCAATGGCGAT
GTCTTGCAAATTCTGAGTCCCTAGGTAGGGCTGAGGCGATATTTATTTAGTTTTGATACA
GCCCTCATTGTAACATGTTGTGCTTTTTTGTATGTTGCTATGAGCTGCTCTTCACGCCCA
CATTTTCTCTCTTTTCTTTCTAGTTTCCTAGCTCCTCCCATCTGTTGAGGAATAGGCGTT
TTTGTCAGATTGGAACTGTTATTATATGATCCATTCTTTGTAGACATGAAGAGATTATTA
TGACACCAGCACAACCTTACAGTTAATCTGCCCTCTTGAGTTTTGTTT