Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0173900-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:4044609:4052188:1 gene:Os02g0173900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SSADH. (Os02t0173900-01)
Sequence

ATGGCGATGGCGATGGCGATGCGACGCGCGGCGGCGCTCGGCGCGCGCCACATCCTCGCC
GCCTCGTCCACCTCCTCCTCCGGCGTCCTCCTCCGCCGCCACATGAGCGTGGACGCGGGG
GCGGCGATGGAGAAGGTACGGGCGGCGGGGCTGCTCCGGACGCAGGGGCTCATCGGCGGC
AAATGGGTGGACGCCTACGACGGCAAGACCATCGAGGTTCAAAATCCAGCAACTGGAGAG
ACTCTTGCCAATGTGTCCTGTATGGGCAGCAAAGAAACATCTGATGCAATAGCTTCAGCT
CACAGTACATTCTATTCTTGGAGCAAACTCACTGCAAATGAGAGGAGCAAGGCTCTAAGA
AAATGGCATGATTTAATTATCTCACACAAGGAAGAACTTGCACTTCTCATGACACTGGAG
CAAGGGAAACCTATGAAAGAGGCTCTTGTTGAGGTCACATATGGTGCAAGTTTTATTGAA
TACTTTGCTGAAGAAGCAAAGCGTATATATGGTGATATTATTCCCCCAACTCTATCTGAT
CGTAGATTATTGGTTTTGAAGCAGCCTGTTGGAGTAGTTGGAGCTGTTACACCATGGAAT
TTTCCTTTAGCGATGATAACCAGAAAGGTTGGACCAGCATTGGCTTGTGGCTGCACTGTC
GTTGTCAAGCCATCAGAGTTCACACCTTTGACAGCACTTGCTGCAGCAGATCTTGCTCTT
CAAGCTGGAATACCAGCTGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGT
GATGCTCTACTCCAGAGTACACAGGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTT
GGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGGTATTTATGAAAAATTTG
CAAGTGCGTTTATCAAGGCTGTTCAGAGTTTGA

Peptide Sequence

PEP ID

Os02t0173900-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:4044609:4052188:1 gene:Os02g0173900 transcript:Os02t0173900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SSADH. (Os02t0173900-01)
Sequence

MAMAMAMRRAAALGARHILAASSTSSSGVLLRRHMSVDAGAAMEKVRAAGLLRTQGLIGG
KWVDAYDGKTIEVQNPATGETLANVSCMGSKETSDAIASAHSTFYSWSKLTANERSKALR
KWHDLIISHKEELALLMTLEQGKPMKEALVEVTYGASFIEYFAEEAKRIYGDIIPPTLSD
RRLLVLKQPVGVVGAVTPWNFPLAMITRKVGPALACGCTVVVKPSEFTPLTALAAADLAL
QAGIPAGAINVVMGNAPEIGDALLQSTQVRKITFTGSTAVGKKLMAGSANTVKKVFMKNL
QVRLSRLFRV

Transcript Sequence

Transcript ID

Os02t0173900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:4044609:4052188:1 gene:Os02g0173900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SSADH. (Os02t0173900-01)
Sequence

ACTGATCCGAACAGAACAGGTGGTCCGATCGCCACCCGCCTCGTCGTCTTCCTCGCGAAC
TCTCCACCCCCACCACCATGGCGATGGCGATGGCGATGCGACGCGCGGCGGCGCTCGGCG
CGCGCCACATCCTCGCCGCCTCGTCCACCTCCTCCTCCGGCGTCCTCCTCCGCCGCCACA
TGAGCGTGGACGCGGGGGCGGCGATGGAGAAGGTACGGGCGGCGGGGCTGCTCCGGACGC
AGGGGCTCATCGGCGGCAAATGGGTGGACGCCTACGACGGCAAGACCATCGAGGTTCAAA
ATCCAGCAACTGGAGAGACTCTTGCCAATGTGTCCTGTATGGGCAGCAAAGAAACATCTG
ATGCAATAGCTTCAGCTCACAGTACATTCTATTCTTGGAGCAAACTCACTGCAAATGAGA
GGAGCAAGGCTCTAAGAAAATGGCATGATTTAATTATCTCACACAAGGAAGAACTTGCAC
TTCTCATGACACTGGAGCAAGGGAAACCTATGAAAGAGGCTCTTGTTGAGGTCACATATG
GTGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGTATATATGGTGATATTATTC
CCCCAACTCTATCTGATCGTAGATTATTGGTTTTGAAGCAGCCTGTTGGAGTAGTTGGAG
CTGTTACACCATGGAATTTTCCTTTAGCGATGATAACCAGAAAGGTTGGACCAGCATTGG
CTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAGTTCACACCTTTGACAGCACTTGCTG
CAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTGGCGCAATAAATGTTGTGATGGGTA
ATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGGTCAGAAAGATTACATTCA
CAGGGTCAACAGCTGTTGGCAAAAAACTGATGGCTGGATCAGCAAATACTGTGAAGAAGG
TATTTATGAAAAATTTGCAAGTGCGTTTATCAAGGCTGTTCAGAGTTTGAAGGTTGGTAA
TGGGCTTGAAGAGAGTACATCACAGGGCCCTCTGATCAATGAAGCTGCTGTTCAGAAGGT
AGAGAAGTTCATAAATGACGCCACTTCAAAGGGAGCAAACATCATGCTTGGTGGTAAAAG
GCACAGCCTTGGGATGTCATTCTATGAGCCAACTGTAGTAGGGAACGTCAGCAATGATAT
GCTTCTTTTCAGGGAAGAAGTCTTTGGTCCAGTTGCACCACTTGTACCATTCAAAACTGA
GGAAGATGCAATCCGTATGGCCAATGATACCAACGCAGGCTTAGCTGCATATATCTTCAC
AAAGAGCATACCTCGTTCATGGCGCGTTTCGGAAGCTCTTGAATATGGACTAGTCGGTGT
GAACGAGGGGATCATCTCAACAGAGGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCT
TGGGAGAGAAGGATCAAAATACGGCATGGACGAGTACCTGGAGCTCAAGTACATTTGCAT
GGGAAACCTGAACTGATCCACTTGAGAGTACCGTGCGTCTTAAAACCGAAGTACCTGGCT
GGTGATGAATCGAAGCCGGGGGCAAGAGTAGCTGCAAGAACTGAAGAGCACTGAGGCTAC
TTGCACCTGCAGGACAGGTTAGAAACTTAGAATAATAATAAGAAGAAATAATAAAAATAA
AGTGGAGTAAGCTAAGCCAGGGAGCCGGAATAAAAAGTTCCCCAATGAGTTGTACATGAT
GTGAACCGTAAAGCACGGCTTCATCTCCGAGCTTTGTTTGGTACTAGTACTACCTGAGAA
ATCATCACGCTACTC