Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0165000-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:3495330:3500112:-1 gene:Os02g0165000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0165000-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0165000-02)
Sequence

ATGGATAGCCCCGGTGGTGCGGCGGCGGCGGCGGCGGCGGCGGAGTCCAGCAATCGCGCG
GGAGAAGATGCTAAAAGTGATGGTGTATCTTGTCAGAATTCGCGACGGCCAAACCTTTCA
TTACAAATACCAAACAGGGCATTTGATGACACTCTGCCAACGTCAACTAGAATCAAAATA
TCACCCAGCCCAAATTCTGCAAGAAGTGGTTTACCACCAAGGCCGAATTCAACTAGAACA
AAATCATCCATCAGGGGCATCATTCCACAAAGGAGCTTCAAAGCAAAGAGTTCATTACAG
GATGGTGACCAGACAATTCTTCTAATTCCTGACACACCATCATCATCAGGACAGCAGGTG
AAGGCAACTACATCAAGATCATTTTCTTTCACAAAGGTCATCAACTCCTTATCAGCGAAG
CGAACCCACTCTCTTCCAGTTACTCCTGTTGCAGCTTCAGGACCTTCTTCTCATGAAGGT
CATGCAGACAACCTGCCAAGTACAGTTAAGAATGAGGTTGAAACACAAATTAGGCGCTCA
CTCTCAGCACCAGGAAATCATGATAGTAAGGATCTGAGGAGGACGGCTTCATCAGGCCTT
ATACGTGTGATTCCCACAACCCCACGACCTGTTCCTGTTGAAACTGTTGCATCAAATGAT
GGCATTGAAGAAGCAGTAGATGCTCCTGAAGATGGAGGTGAAGACATTCCTGAAGAAGAT
GCTGTCTGCAGAATTTGCCTAGTTGAACTCAATGAAGGAGGTGAAACACTTAAATTGGAG
TGCAGCTGCAAGGGAGAACTTGCTCTTGCACACCAGGAGTGTGCAATAAAATGGTTTAGC
ATCAAGGGAAACAAGACATGCGATGTTTGCAGGCAGGAAGTTCAGAATCTACCTGTGACT
TTATTGAGAATACAGATTCGAACTGTTAACAGACAACCGCGGAATGGTGTTCAGCAAAGA
GCAGCACATCCACACAGATTTTGGAAGGAGACTCCAGTTCTAGTCATGGTCAGCACGCTT
GCGTACTTCTGTTTCTTGGAGCAACTCTTGGTTGCTGATATGAAGTCACGTGCACTAGCT
ATTTCTTTGCCTTTCTCCTGTCTCCTGGGCATATTTTCTTCCATCCTCGCATCCACAATG
GCAACCGATAATTACCTATGGGCTTTCGCTACGTTCCAGTTTGCTTTCCTAATCCTATTT
GCTCATATTTTCTACAACTTGTTAAAAATGGGGGCAGTCCTTGCAATCCTACTTGCATCG
TTCACTGGTTTCGGCATCGCTATTAGTCTAAATGCAATGCTAATAGAATACCTGAGGTGG
AGACTCCTGCGGAATCAACGGTTAACTCAACGTAGAAATCACAGACATGGTCAATCTGGA
AACAATGCTTCAAACGAGAACACTGCAAGTAATGCTAGGCAGCAAGGCAGCGGAAGCGAT
CAACAGTCTGCAGAACATGGCTGA

Peptide Sequence

PEP ID

Os02t0165000-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:3495330:3500112:-1 gene:Os02g0165000 transcript:Os02t0165000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0165000-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0165000-02)
Sequence

MDSPGGAAAAAAAAESSNRAGEDAKSDGVSCQNSRRPNLSLQIPNRAFDDTLPTSTRIKI
SPSPNSARSGLPPRPNSTRTKSSIRGIIPQRSFKAKSSLQDGDQTILLIPDTPSSSGQQV
KATTSRSFSFTKVINSLSAKRTHSLPVTPVAASGPSSHEGHADNLPSTVKNEVETQIRRS
LSAPGNHDSKDLRRTASSGLIRVIPTTPRPVPVETVASNDGIEEAVDAPEDGGEDIPEED
AVCRICLVELNEGGETLKLECSCKGELALAHQECAIKWFSIKGNKTCDVCRQEVQNLPVT
LLRIQIRTVNRQPRNGVQQRAAHPHRFWKETPVLVMVSTLAYFCFLEQLLVADMKSRALA
ISLPFSCLLGIFSSILASTMATDNYLWAFATFQFAFLILFAHIFYNLLKMGAVLAILLAS
FTGFGIAISLNAMLIEYLRWRLLRNQRLTQRRNHRHGQSGNNASNENTASNARQQGSGSD
QQSAEHG

Transcript Sequence

Transcript ID

Os02t0165000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:3495330:3500112:-1 gene:Os02g0165000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0165000-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0165000-02)
Sequence

ACCTACTCTCTCTCTCTGTCTCTCGCTCTCGCCGTCGCCGAGCTAGTTGAGCCGCGGATG
GATAGCCCCGGTGGTGCGGCGGCGGCGGCGGCGGCGGCGGAGTCCAGCAATCGCGCGGGA
GAAGATGCTAAAAGTGATGGTGTATCTTGTCAGAATTCGCGACGGCCAAACCTTTCATTA
CAAATACCAAACAGGGCATTTGATGACACTCTGCCAACGTCAACTAGAATCAAAATATCA
CCCAGCCCAAATTCTGCAAGAAGTGGTTTACCACCAAGGCCGAATTCAACTAGAACAAAA
TCATCCATCAGGGGCATCATTCCACAAAGGAGCTTCAAAGCAAAGAGTTCATTACAGGAT
GGTGACCAGACAATTCTTCTAATTCCTGACACACCATCATCATCAGGACAGCAGGTGAAG
GCAACTACATCAAGATCATTTTCTTTCACAAAGGTCATCAACTCCTTATCAGCGAAGCGA
ACCCACTCTCTTCCAGTTACTCCTGTTGCAGCTTCAGGACCTTCTTCTCATGAAGGTCAT
GCAGACAACCTGCCAAGTACAGTTAAGAATGAGGTTGAAACACAAATTAGGCGCTCACTC
TCAGCACCAGGAAATCATGATAGTAAGGATCTGAGGAGGACGGCTTCATCAGGCCTTATA
CGTGTGATTCCCACAACCCCACGACCTGTTCCTGTTGAAACTGTTGCATCAAATGATGGC
ATTGAAGAAGCAGTAGATGCTCCTGAAGATGGAGGTGAAGACATTCCTGAAGAAGATGCT
GTCTGCAGAATTTGCCTAGTTGAACTCAATGAAGGAGGTGAAACACTTAAATTGGAGTGC
AGCTGCAAGGGAGAACTTGCTCTTGCACACCAGGAGTGTGCAATAAAATGGTTTAGCATC
AAGGGAAACAAGACATGCGATGTTTGCAGGCAGGAAGTTCAGAATCTACCTGTGACTTTA
TTGAGAATACAGATTCGAACTGTTAACAGACAACCGCGGAATGGTGTTCAGCAAAGAGCA
GCACATCCACACAGATTTTGGAAGGAGACTCCAGTTCTAGTCATGGTCAGCACGCTTGCG
TACTTCTGTTTCTTGGAGCAACTCTTGGTTGCTGATATGAAGTCACGTGCACTAGCTATT
TCTTTGCCTTTCTCCTGTCTCCTGGGCATATTTTCTTCCATCCTCGCATCCACAATGGCA
ACCGATAATTACCTATGGGCTTTCGCTACGTTCCAGTTTGCTTTCCTAATCCTATTTGCT
CATATTTTCTACAACTTGTTAAAAATGGGGGCAGTCCTTGCAATCCTACTTGCATCGTTC
ACTGGTTTCGGCATCGCTATTAGTCTAAATGCAATGCTAATAGAATACCTGAGGTGGAGA
CTCCTGCGGAATCAACGGTTAACTCAACGTAGAAATCACAGACATGGTCAATCTGGAAAC
AATGCTTCAAACGAGAACACTGCAAGTAATGCTAGGCAGCAAGGCAGCGGAAGCGATCAA
CAGTCTGCAGAACATGGCTGAAGATGATCCATCTGTGGTTTTGCAGGTATCATGGTGATG
ATAAAATTCAAAATCAAAAGTGTTAATGAATGAATGGAATAAAGGCGCCACTGGTAAAAC
CGCAAATCTGCAATTCCAAGAATGCCATGGCCGGTTGCCACCTAAGTTGATCGTGAAACA
AAGTTATTATTCAGAAAAAGGGGGCTCTCAAGTCTCTCAACTCTGAACCAAAAAGGTCCA
GCAGTCTCCATTTACTCCCGGTTATAGTTTAGTAGTCCAGTGTGATATGTGTGTTTATGA
AATGTATAAATTGCGAAAGCAAATACTACACACCGACCTTTGTATCACAACCATGAACAA
ACTGTATATAGCTCATCGTTGTCGATTTT