Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0164900-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:3487434:3492876:1 gene:Os02g0164900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 6A description:Similar to Auxin response factor 3. (Os02t0164900-01);Similar to Auxin response factor 3. (Os02t0164900-02)
Sequence

ATGAAGCTCTCGCCGTCGGCCGGCGGCGTCTCCGACCAGCCGCCGTCGCCGCCGGAAGTT
GCAGAGGAGCAGAAGTGCCTAAATTCTGAGTTGTGGCATGCATGCGCCGGCCCTCTCGTT
TCGCTGCCTGCGGTCGGTAGTCGGGTGGTTTATTTTCCTCAAGGCCACAGTGAGCAGGTA
GCTGCATCAACAAATAAGGAAATGGAGTCTCAGATCCCCAACTATCCTAACCTGCCGCCG
CAGCTTATATGCCAGCTACATAATGTGACCATGCACGCCGATGCAGAGACGGATGAAGTC
TATGCGCAAATGACGCTGCAGCCACTCAGCCCGCAAGAGCTCAAGGATCCATTCCTACCC
GCCGAGCTAGGCACTGCCAGCAAGCAGCCAACAAATTATTTCTGCAAAACGTTAACTGCT
AGTGACACAAGTACACATGGTGGATTCTCTGTTCCCCGTCGAGCAGCAGAGAAAGTATTT
CCTCCGCTGGATTTCACTCAGCAGCCTCCAGCTCAAGAGTTGATGGCGAAAGACCTCCAT
GGAAATGAATGGAAATTCCGTCATATCTTTCGTGGCCAACCGAAGCGGCATCTTCTGACT
ACGGGTTGGAGCGTCTTTGTAAGTGCAAAGAGACTGGTTGCTGGAGACTCTGTCCTTTTT
ATCTGGAATGACAGTAATCAGCTGCTTCTGGGAATTCGTCGGGCAAATAGGCCACAAACG
GTCATGCCATCATCAGTATTGTCTAGTGACAGCATGCATATTGGTCTGCTTGCTGCAGCT
GCTCACGCCGCATCAACAAATAGCCGGTTTACTATTTTCTATAATCCAAGAGCAAGCCCT
TCGGAGTTTGTTATACCACTGGCTAAATATGTAAAGGCTGTCTACCATACCCGCATATCG
GTGGGCATGCGTTTCCGGATGCTTTTTGAAACAGAAGAATCCAGTGTTAGGAGATACATG
GGGACAATAACAGGAATAAGTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGC
TCTGTCAAGGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTT
TGGGAGATCGAGCCTCTGACAACTTTCCCGATGTATCCATCTCCTTTTCCTCTCAGACTA
AAGCGTCCATGGCCAACAGGCTTACCTTCTTTATATGGCGGAAAGGAGGATGACTTGGCT
TCTTCTCTTATGTGGCTTCGAGATAGTCAAAACACAGGTTTCCAATCTCTGAATTTTGGA
GGACTTGGTATGAGTCCGTGGATGCAGCCAAGGCTGGATAGTTCCCTACTTGGTCTGCAA
CCTGACATGTACCAAACGATAGCGGCGGCGGCGGCTTTACAGAACACCACTAAGCAAGTA
TCACCTGCCATGCTGCAGTTCCAGCAGCCGCAAAACATTGTCGGTAGATCTTCTCTTCTA
TCCAGTCAGATTCTGCAGCAAGCACAGCCTCAATTTCAGCAGATGTACCACCAAAACATC
AATGGCAACTCAATCCAAGGCCATAGTCAGCCTGAGTACCTCCAGCAACCGCTTCAACAT
TGCCAATCATTTAACGAACAGAAGCCTCAGTTGCAGCCGCAGCAACAGCAGCAAGAATCA
CACCAGCAGCAACCTCAGCATCAACAAATGCAACAACAGAAACACTTGTCCAACTTTCAG
ACTGTACCAAATGCATTGTCGGTTTTTTCACAGCTTTCCTCCACCCCTCAGTCTACACCC
TCCACATTGCAGACAGTTTCACCATTCTCACAGCAACATAATTTCCCTGACACAAATATC
AGTTGTCTCTCTCCATCCAATGTCTCATCCATGCACGATACACTGAGATCATTCCCTTCA
GAAGCTGCTTCAGACCTCCCAGGTGTGCCAAGAATCACCCCTGTACCTGTCTCTGACCCA
TGGTCATCTAAGCGAGTTGCAGTGGAATCTACGATCACTTCTCGCCCACATGACATTTCA
TCACAGATAGAGAACTTCGACTTGACACCTTCTAGTATTCCTCAAAACTCCACGTTAGCA
CCACTGCCTGGAAGGGAATGCCTGGTGGATCAAGATGGGAGCTCTGATCCTCAAAATCAC
TTCTTGTTTGGTGTAAATATAGACTCACAGTCACTTTTGATGCAAGATGGCATTCCAAGC
CTTCACAATGAAAACAGTTCAAGCACAATTCCATATTCCACATCCAACTTCCTTAGCCCT
TCTCAAGATGATTATCCATTGAGTCAAACACTAACTACTCCGGGCTGCTTAGATGAATCA
GGATATGTTCCATGTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTG
AAGGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCAGTTAT
CATGAACTTCGTAGTGAGGTAGGGCGCCTTTTTGGCCTTGAGGGCCAGTTGGAAGACCCT
TTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGGACGACGTTCTTCTAGTTGGC
GATGATCCGTGGCAGGAATTTGTGAACAGTGTGTCTTGCATAAAGATACTTTCGCCGCAG
GAGGTTCAGCAGATGGGCAAGCCGGGCATTGAACTCTTCTCGACTTCTGCAAGGAGACTT
GGCAACAGCTGTGACAACTACATGAGCAGGCAGGAATCAAGAAGCCTAAGCACTGGAATC
GCGTCGGTGGGCTCAGTTGAGTTCTGA

Peptide Sequence

PEP ID

Os02t0164900-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:3487434:3492876:1 gene:Os02g0164900 transcript:Os02t0164900-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 6A description:Similar to Auxin response factor 3. (Os02t0164900-01);Similar to Auxin response factor 3. (Os02t0164900-02)
Sequence

MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQV
AASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLP
AELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLH
GNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQT
VMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRIS
VGMRFRMLFETEESSVRRYMGTITGISDLDPVRWMNSHWRSVKVGWDESTAGERQPRVSL
WEIEPLTTFPMYPSPFPLRLKRPWPTGLPSLYGGKEDDLASSLMWLRDSQNTGFQSLNFG
GLGMSPWMQPRLDSSLLGLQPDMYQTIAAAAALQNTTKQVSPAMLQFQQPQNIVGRSSLL
SSQILQQAQPQFQQMYHQNINGNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQES
HQQQPQHQQMQQQKHLSNFQTVPNALSVFSQLSSTPQSTPSTLQTVSPFSQQHNFPDTNI
SCLSPSNVSSMHDTLRSFPSEAASDLPGVPRITPVPVSDPWSSKRVAVESTITSRPHDIS
SQIENFDLTPSSIPQNSTLAPLPGRECLVDQDGSSDPQNHFLFGVNIDSQSLLMQDGIPS
LHNENSSSTIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNADQVKRPHATFV
KVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVG
DDPWQEFVNSVSCIKILSPQEVQQMGKPGIELFSTSARRLGNSCDNYMSRQESRSLSTGI
ASVGSVEF

Transcript Sequence

Transcript ID

Os02t0164900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:3487434:3492876:1 gene:Os02g0164900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 6A description:Similar to Auxin response factor 3. (Os02t0164900-01);Similar to Auxin response factor 3. (Os02t0164900-02)
Sequence

GGGTTGCTTGCTCCATGACACGACAGCGCGTTTGGGAACGCCTCGTGATCTCGGTGCAGA
AAGGATTCCTTCTCTGCTCCATTTCTTGCACTCTCCACTTTGCATTCTAGATCGGTTGGG
GGAAGAAGAAGAAGAGAAGAAGAAGAATGAAGCTCTCGCCGTCGGCCGGCGGCGTCTCCG
ACCAGCCGCCGTCGCCGCCGGAAGTTGCAGAGGAGCAGAAGTGCCTAAATTCTGAGTTGT
GGCATGCATGCGCCGGCCCTCTCGTTTCGCTGCCTGCGGTCGGTAGTCGGGTGGTTTATT
TTCCTCAAGGCCACAGTGAGCAGGTAGCTGCATCAACAAATAAGGAAATGGAGTCTCAGA
TCCCCAACTATCCTAACCTGCCGCCGCAGCTTATATGCCAGCTACATAATGTGACCATGC
ACGCCGATGCAGAGACGGATGAAGTCTATGCGCAAATGACGCTGCAGCCACTCAGCCCGC
AAGAGCTCAAGGATCCATTCCTACCCGCCGAGCTAGGCACTGCCAGCAAGCAGCCAACAA
ATTATTTCTGCAAAACGTTAACTGCTAGTGACACAAGTACACATGGTGGATTCTCTGTTC
CCCGTCGAGCAGCAGAGAAAGTATTTCCTCCGCTGGATTTCACTCAGCAGCCTCCAGCTC
AAGAGTTGATGGCGAAAGACCTCCATGGAAATGAATGGAAATTCCGTCATATCTTTCGTG
GCCAACCGAAGCGGCATCTTCTGACTACGGGTTGGAGCGTCTTTGTAAGTGCAAAGAGAC
TGGTTGCTGGAGACTCTGTCCTTTTTATCTGGAATGACAGTAATCAGCTGCTTCTGGGAA
TTCGTCGGGCAAATAGGCCACAAACGGTCATGCCATCATCAGTATTGTCTAGTGACAGCA
TGCATATTGGTCTGCTTGCTGCAGCTGCTCACGCCGCATCAACAAATAGCCGGTTTACTA
TTTTCTATAATCCAAGAGCAAGCCCTTCGGAGTTTGTTATACCACTGGCTAAATATGTAA
AGGCTGTCTACCATACCCGCATATCGGTGGGCATGCGTTTCCGGATGCTTTTTGAAACAG
AAGAATCCAGTGTTAGGAGATACATGGGGACAATAACAGGAATAAGTGATCTTGATCCTG
TTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGGTTGGATGGGATGAGTCGACTGCTG
GAGAGAGACAGCCAAGGGTGTCTCTTTGGGAGATCGAGCCTCTGACAACTTTCCCGATGT
ATCCATCTCCTTTTCCTCTCAGACTAAAGCGTCCATGGCCAACAGGCTTACCTTCTTTAT
ATGGCGGAAAGGAGGATGACTTGGCTTCTTCTCTTATGTGGCTTCGAGATAGTCAAAACA
CAGGTTTCCAATCTCTGAATTTTGGAGGACTTGGTATGAGTCCGTGGATGCAGCCAAGGC
TGGATAGTTCCCTACTTGGTCTGCAACCTGACATGTACCAAACGATAGCGGCGGCGGCGG
CTTTACAGAACACCACTAAGCAAGTATCACCTGCCATGCTGCAGTTCCAGCAGCCGCAAA
ACATTGTCGGTAGATCTTCTCTTCTATCCAGTCAGATTCTGCAGCAAGCACAGCCTCAAT
TTCAGCAGATGTACCACCAAAACATCAATGGCAACTCAATCCAAGGCCATAGTCAGCCTG
AGTACCTCCAGCAACCGCTTCAACATTGCCAATCATTTAACGAACAGAAGCCTCAGTTGC
AGCCGCAGCAACAGCAGCAAGAATCACACCAGCAGCAACCTCAGCATCAACAAATGCAAC
AACAGAAACACTTGTCCAACTTTCAGACTGTACCAAATGCATTGTCGGTTTTTTCACAGC
TTTCCTCCACCCCTCAGTCTACACCCTCCACATTGCAGACAGTTTCACCATTCTCACAGC
AACATAATTTCCCTGACACAAATATCAGTTGTCTCTCTCCATCCAATGTCTCATCCATGC
ACGATACACTGAGATCATTCCCTTCAGAAGCTGCTTCAGACCTCCCAGGTGTGCCAAGAA
TCACCCCTGTACCTGTCTCTGACCCATGGTCATCTAAGCGAGTTGCAGTGGAATCTACGA
TCACTTCTCGCCCACATGACATTTCATCACAGATAGAGAACTTCGACTTGACACCTTCTA
GTATTCCTCAAAACTCCACGTTAGCACCACTGCCTGGAAGGGAATGCCTGGTGGATCAAG
ATGGGAGCTCTGATCCTCAAAATCACTTCTTGTTTGGTGTAAATATAGACTCACAGTCAC
TTTTGATGCAAGATGGCATTCCAAGCCTTCACAATGAAAACAGTTCAAGCACAATTCCAT
ATTCCACATCCAACTTCCTTAGCCCTTCTCAAGATGATTATCCATTGAGTCAAACACTAA
CTACTCCGGGCTGCTTAGATGAATCAGGATATGTTCCATGTTCAGATAATGCTGATCAAG
TGAAGCGACCGCATGCAACCTTTGTGAAGGTTTACAAATCTGGAACCGTTGGAAGGTTGC
TCGACATCACTAGATTTAGCAGTTATCATGAACTTCGTAGTGAGGTAGGGCGCCTTTTTG
GCCTTGAGGGCCAGTTGGAAGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACC
GAGAGGACGACGTTCTTCTAGTTGGCGATGATCCGTGGCAGGAATTTGTGAACAGTGTGT
CTTGCATAAAGATACTTTCGCCGCAGGAGGTTCAGCAGATGGGCAAGCCGGGCATTGAAC
TCTTCTCGACTTCTGCAAGGAGACTTGGCAACAGCTGTGACAACTACATGAGCAGGCAGG
AATCAAGAAGCCTAAGCACTGGAATCGCGTCGGTGGGCTCAGTTGAGTTCTGAGAAATAG
GGAGCTCATAGCACCCGGCGTTAGGCGTCCAGTTCTGTACGTCTCTGTAGCTCTTAGTTC
TGTGACCTGGAACCCAAGCACATAGGTCAAGTGTAGCTCTAAGTTATGCGCTGTCTGGTA
ATTATGTCATATTACATTGACTTTTAGTGGTACCTATTACATTTTGGTATACATGCCGAC
ACTTTGTTTCCTGGAATACTGATCATGTTAACTTAGGGCATCTAATTATTAGGTTCATGT
TGAGTAGTGCTGTAGTGCCGCAGGCGCTAGCTTTGGCCATATTCTGTATATTGATGATGT
TTTCCTCCTGCAATGTACTGTTAATGACAGCAAGTAAGGTTTTCCATGCAACTG