Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0159900-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:3234312:3237645:1 gene:Os02g0159900 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKD1 protein (Vacuolar sorting protein 4b). (Os02t0159900-01)
Sequence	ATGGACGGCGGCATGAAGGAGCAGGGGATACTCCTGGTGCGGAAGGCGGTGGAGGAGGAC GACGCCGGCAACCACGCGCGGGCGCTGCCGCTGTACGTGCACGCGCTCGACTACCTCGCC GCGCACCTCAAGTACGAGCGGAACCCCAGGGTCCGCGACGCCATCACTGCCAAGCTCGCC GGCTACATCGCCCGCGCCGAGGAGATCCGCGACGCGCTCCTCCCCGCCGCCGGCGACGAC GCCACGCCGCCTGCGGCAGCGGCGGAGGAGGGCAAGGCGAAGTGCGGCGGCGGGGAAGAC GAGTCGGATCGGGCCAAGCTGCGGGCGGGGCTCCACTCGGCGATCGTCTCGGAGAAGCCC AACGTGAGGTGGAGCGACGTCTCCGGGCTGGATGGAGCAAAGCAGGCGCTGCAGGAGGCC GTCGTGCTCCCCGTCGAGTTCCCGCAGTTCTTCACCGGCAAGCGGAAGCCATGGAAAGCC TTCCTCCTGTACGGGCCACCGGGGACGGGCAAATCTTACTTGGCCAAAGCCGTCGCGACA GAGGCCGATTCCACATTCTTCAGTATATCTTCGTCGGATCTTCTCTCCAAGTGGATGGGA GAAAGTGAGAAGCTGGTGACGAACCTGTTCCAGATGGCCCGTGAAAATGCACCCTCCATT ATCTTCATCGATGAGATCGACTCTCTGTGTGGCCAACGAGGGGAAGGCAACGAGAGCGAG GCTTCTCGGAGAGTTAAGACAGAATTCCTCGTGCAGATGCAGGGTGTTGGACATAACGAT GATAAAGTCCTTGTTCTTGCTGCCACAAACACTCCATATGCTCTGGATCAGGCTGTACGG CGGCGTTTTGACAAACGTATCTACATTCCGCTACCCGACCTTAAAGCTAGGCAGCACATG TTCAAGGTCCATCTGGGTGACACCCCTCACAGCCTCACCAAGGGCGACTTCGAGAGCTTG GCTCGCCGGACCGACGGCTTCTCCGGCTCCGACATCGCCGTCTGCGTGAAGGACGTGTTG TTCGAGCCGGTGCGCAAGACGCAGGATGCCATGTTCTTCTTCGGGACGGCGGAGGGCGAC GGCGACGGCGGCGCGTGGACGCCGTGTGGGCCGACGCGGCCGGGCGCCGTGCAGATCACC ATGCAGGAGCTCGCGGCCAAAGGCCTGGCTGCTCAGATCACGCCGCCGCCGATCACGAGG ACGGACTTGGACAAGGTGCTGGCGAGGCAGAAGGCGACGGTGAGCGAGAAGGATCTGGAG GTGTACACCAGGTTCACCAGAGAGTTTGGCGAGGAAGGCTAG

Peptide Sequence

PEP ID	Os02t0159900-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:3234312:3237645:1 gene:Os02g0159900 transcript:Os02t0159900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKD1 protein (Vacuolar sorting protein 4b). (Os02t0159900-01)
Sequence	MDGGMKEQGILLVRKAVEEDDAGNHARALPLYVHALDYLAAHLKYERNPRVRDAITAKLA GYIARAEEIRDALLPAAGDDATPPAAAAEEGKAKCGGGEDESDRAKLRAGLHSAIVSEKP NVRWSDVSGLDGAKQALQEAVVLPVEFPQFFTGKRKPWKAFLLYGPPGTGKSYLAKAVAT EADSTFFSISSSDLLSKWMGESEKLVTNLFQMARENAPSIIFIDEIDSLCGQRGEGNESE ASRRVKTEFLVQMQGVGHNDDKVLVLAATNTPYALDQAVRRRFDKRIYIPLPDLKARQHM FKVHLGDTPHSLTKGDFESLARRTDGFSGSDIAVCVKDVLFEPVRKTQDAMFFFGTAEGD GDGGAWTPCGPTRPGAVQITMQELAAKGLAAQITPPPITRTDLDKVLARQKATVSEKDLE VYTRFTREFGEEG

Transcript Sequence

Transcript ID	Os02t0159900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:3234312:3237645:1 gene:Os02g0159900 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKD1 protein (Vacuolar sorting protein 4b). (Os02t0159900-01)
Sequence	ATCTCCCGGTGGAAATCGGCGAAGGGGAGGAGTCGATCGATCGGTGGAGTTCGCCGGCGG CGAGGGAGATGGACGGCGGCATGAAGGAGCAGGGGATACTCCTGGTGCGGAAGGCGGTGG AGGAGGACGACGCCGGCAACCACGCGCGGGCGCTGCCGCTGTACGTGCACGCGCTCGACT ACCTCGCCGCGCACCTCAAGTACGAGCGGAACCCCAGGGTCCGCGACGCCATCACTGCCA AGCTCGCCGGCTACATCGCCCGCGCCGAGGAGATCCGCGACGCGCTCCTCCCCGCCGCCG GCGACGACGCCACGCCGCCTGCGGCAGCGGCGGAGGAGGGCAAGGCGAAGTGCGGCGGCG GGGAAGACGAGTCGGATCGGGCCAAGCTGCGGGCGGGGCTCCACTCGGCGATCGTCTCGG AGAAGCCCAACGTGAGGTGGAGCGACGTCTCCGGGCTGGATGGAGCAAAGCAGGCGCTGC AGGAGGCCGTCGTGCTCCCCGTCGAGTTCCCGCAGTTCTTCACCGGCAAGCGGAAGCCAT GGAAAGCCTTCCTCCTGTACGGGCCACCGGGGACGGGCAAATCTTACTTGGCCAAAGCCG TCGCGACAGAGGCCGATTCCACATTCTTCAGTATATCTTCGTCGGATCTTCTCTCCAAGT GGATGGGAGAAAGTGAGAAGCTGGTGACGAACCTGTTCCAGATGGCCCGTGAAAATGCAC CCTCCATTATCTTCATCGATGAGATCGACTCTCTGTGTGGCCAACGAGGGGAAGGCAACG AGAGCGAGGCTTCTCGGAGAGTTAAGACAGAATTCCTCGTGCAGATGCAGGGTGTTGGAC ATAACGATGATAAAGTCCTTGTTCTTGCTGCCACAAACACTCCATATGCTCTGGATCAGG CTGTACGGCGGCGTTTTGACAAACGTATCTACATTCCGCTACCCGACCTTAAAGCTAGGC AGCACATGTTCAAGGTCCATCTGGGTGACACCCCTCACAGCCTCACCAAGGGCGACTTCG AGAGCTTGGCTCGCCGGACCGACGGCTTCTCCGGCTCCGACATCGCCGTCTGCGTGAAGG ACGTGTTGTTCGAGCCGGTGCGCAAGACGCAGGATGCCATGTTCTTCTTCGGGACGGCGG AGGGCGACGGCGACGGCGGCGCGTGGACGCCGTGTGGGCCGACGCGGCCGGGCGCCGTGC AGATCACCATGCAGGAGCTCGCGGCCAAAGGCCTGGCTGCTCAGATCACGCCGCCGCCGA TCACGAGGACGGACTTGGACAAGGTGCTGGCGAGGCAGAAGGCGACGGTGAGCGAGAAGG ATCTGGAGGTGTACACCAGGTTCACCAGAGAGTTTGGCGAGGAAGGCTAGCATCATCTTG CTGTCATACTGTGACATCTGATTCCTGTAAATGATCAGTAAGATGCTTCTGTATAGCTAG TGCGCACTCGCATCAGGATTAGTTGAATGATCTGATACAAAGTCTTGCATGGGC