Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0158400-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:3182926:3187016:-1 gene:Os02g0158400 gene_biotype:protein_coding transcript_biotype:protein_coding description:ssDNA-binding transcriptional regulator family protein. (Os02t0158400-01)
Sequence

ATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGAT
GCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAG
AACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCT
ATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAA
AATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCA
AAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCT
GCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTG
AAAAAATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACT
GTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAG
TTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAG
GCCTTGACTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCA
CACCCAGATTCAGAGTGGGAAAGGTGA

Peptide Sequence

PEP ID

Os02t0158400-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:3182926:3187016:-1 gene:Os02g0158400 transcript:Os02t0158400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:ssDNA-binding transcriptional regulator family protein. (Os02t0158400-01)
Sequence

MQRLSRFVPSSSRRVTDLKDALWSGSLTFQHALSTFAADENTSGRKFASYTVFKGKAALS
MQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGP
AESCEFFHDPSMKSSHEGQVKKSLSVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAE
FTVMRTALSFALPHILGWDQALTNHQPSPSPASKPRVERPHPDSEWER

Transcript Sequence

Transcript ID

Os02t0158400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:3182926:3187016:-1 gene:Os02g0158400 gene_biotype:protein_coding transcript_biotype:protein_coding description:ssDNA-binding transcriptional regulator family protein. (Os02t0158400-01)
Sequence

CCCATTCCATTCGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGC
CAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAA
AGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAG
ACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCAC
TTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGA
ACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATT
ATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTG
GGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCC
AAGTGAAAAAATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATA
TAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAG
CTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGG
ACCAGGCCTTGACTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGC
GCCCACACCCAGATTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGG
AGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATC
GAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCAC
ACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCA
AAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGA
CTTATGTTATTTGCAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTT
ATGGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTC
C