Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0141300-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:2231145:2239224:-1 gene:Os02g0141300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:COLLAPSED ABNORMAL POLLEN1 description:Arabinokinase-Like Protein, Pollen development (Os02t0141300-01)
Sequence	ATGAGGATTCGGGGAGACGGCGGAGGTGATGAGGAGGAGGCGGCGATGGCGGTGGTGTCG GCGCCGCCGCAGCATCTGGTCTTCGCGTACTACATCACCGGCCATGGCTTCGGCCACGCC ACCCGCGCGCTCGAGGTGGTGAGGCACCTGATCGCGGCGGGGCACGACGTGCACGTGGTC ACCGGCGCGCCGGAGTTCGTCTTCACCACCGAGATCAGCTCGCCCAACCTCCACATCCGC AAGGTGCTCCTCGACTGCGGCGCCGTCCAGGCCGACGCCCTCACCGTCGATCGCCTCGCC TCCCTCGAGAAGTATCATCAGACGGCCGTGATGCCACGCGAATCGATTCTGAGGACTGAG GTGGAATGGCTCAACACGATCAAGGCCGACCTAGTGGTTTCAGATGTCGTCCCCGTCGCG TGCAGGGCGGCTGCGGATGCTGGCATTCGATCGGTGTGCGTCACCAATTTCAGCTGGGAC TTCATTTATGCAGAGTATGTCGTAGTAGCTGGACATCATCATCGCTCAATTGTGTGGCAG ATAGCAGAAGATTATTCACATTGTGAATTCTTACTACGACTCCCTGGATACTGCCCTATG CCTGCTTTCCGTGATGTCATTGATGTTCCTCTTGTGGTGAGAAGATTGCATAAATCTAGA TCTGAGGTGAGGAAGGAATTAGGAATTAAAGATGATGTTAAGGTGGTCATTTTCAACTTT GGAGGACAGCCTGCAGGATGGAAACTGAAGAAAGAATGGCTGCCTGATGGTTGGCTCTGT TTGGTATGTGGTGCATCTGAAACTCAAGAGCTTCCACCAAATTTCATTAAACTTGCAAAG GACGCCTATACACCTGATTTGATGGCAGCATCTGACTGCATGCTTGGGAAAATTGGATAT GGCACTGTGAGTGAGGCTTTGGCTTACAAGCTGCCATTTGTATTTGTTCGTAGAGATTAT TTCAATGAAGAGCCGTTTTTGAGGAATATGCTTGAGCATTATCAATGTGGCGTTGAGATG GTACGGAGGGATTTACTTACTGGACACTGGAAACCTTATCTGCAACGTGCTATGACACTT CATCCATGCTATGATGGTCCAATAAATGGTGGTGAGGTGGCTGCACATATCCTCCAGGAC ACTGCTGTTGGCAAGAAGTATATTTCTGGCAAGTTGAGCGGAGCAAGACGTTTGCGTGAT GCCATAGTGCTAGGATATCAACTACAAAGGGCTCCAGGGAGAGATGTCGGAATTCCTGAC TGGTATTCTGTGTCTGAGAAAGAAATCGGTGTTCGTCCAGCACCAACATATCATGAGGTT AATGGAAGTGCAGAGTCATCTTTTGAGGACTTCGAGATACTCCATGGGGACATACAAGGA TTAACTGATACAATGGCATTTTTAACTAGTTTATCAGGACTTGTTGGAAATGATCCAAGG AGCCCTGAGAAGCAATCTCGAGAGAGGGTTGCTGCTTCTGTTTTCTTTGATTGGGAGGAG GAAATATATGTTGCAAGAGCACCTGGACGTTTAGATGTCATGGGTGGCATCGCAGATTAT TCAGGAAGTCTTGTATTACAGATGCCCATTCGAGAGGCTTGTCATGTTGCTATTCAGAGA AGTAATCCTATGAAGCAGAAGCTATGGAAGCATACACAAGCTAGGCAACTAGCAAATGGC AGAGCAGTGCCGTTGTTACAAATTGTATCATTTGGTTCTGAATTGAGTAATCGTGCACCA ACCTTTGATATGGACCTGTCTGATTTTATGGATGGTGACAAACCAATATCCTATGATAAG GCCAAAGAATATTTCTCTCAGGACCCATCCCAAAAATGGGCTGCATATGTTGCTGGAACA ATCCTTGTGTTGATGACCGAGCTAGGTGTGGTCTTCACAGACAGCATGAGCATTCTGGTT TCTTCATCAGTTCCTGAAGGTAAAGGTGTCTCCTCTTCTGCATCAGTGGAGGTTGCCAGT ATGTCTGCTATTGCTGCTGCCTATGGTCTAAATATCCCTCCACGGGATCTTGCCATACTC TGCCAAAAGGTTGAGAATCGCATTGTTGGAGCACCTTGTGGTGTAATGGATCAAATGACA TCTGCTTGTGGAGAAGCTAACAAACTTCTTGCAATGATTTGTCAGCCTGCAGAAGTGAAA GAGTTGGTCAGCATTCCAACTCACATTCGATTTTGGGGTCTTGACTCTGGGATACGACAT AGTGTTGGTGGGACTGATTATGGCTCTGTAAGGGTAGGCACTTACATGGGACGCAAGATG ATCAAGTGTGCTGCATCTGATCTTCTTTCAGAATCATTACCCTCCTGTCCTCCTATTCAA TCAGGCAACACAAATTCTGATGAATACGAAGAACATGGTGTAGATCTTTTGAAATCTGAA GCGTCGCTGGAGTATTTATGCAACCTACCACCTCATAGATATGAAGCTGTTTACGCGAGA GATATTCCAGAGATCATAACCGGGGATGCATTTTTGGAGAAGTATGGAGATCATAATGAT GCAGTAACAACTGTTGACCCAAAACGATCTTACTGTGTGAAGGCTCCTACTAGACATCCT ATATACGAGAACTTCCGAGTTGAGGCCTTCAAAGCATTGCTAACAGCAGCCAAAACAGTT GAGCAACTTTCGGCCCTTGGAGAATTGATGTATCAGTGCCACTACAGCTACAATGCTTGT GGGCTTGGTTCTGATGGAACCGACAGGCTTGTTAATATGGTACAAGAAGTCCAGCACAGG AAGACCTCACAGGATGGTGGTCCTAGTTTATTTGGTGCAAAGATAACTGGTGGAGGATCT GGGGGCTCGGTTTGTGTCATTGGGAAAAATTGCTTGAAAAGCAGTGAAGAGATTTTTGAG ATTCAGAAGAGATACAAAGCTGCTACCGGGTACCTACCAATTGTTTTCGAGGGCTCATCT CCAGGTGCAGGCAAGTTTGGATACCTGAAGATTCGACGGCGATCCACATAG

Peptide Sequence

PEP ID	Os02t0141300-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:2231145:2239224:-1 gene:Os02g0141300 transcript:Os02t0141300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:COLLAPSED ABNORMAL POLLEN1 description:Arabinokinase-Like Protein, Pollen development (Os02t0141300-01)
Sequence	MRIRGDGGGDEEEAAMAVVSAPPQHLVFAYYITGHGFGHATRALEVVRHLIAAGHDVHVV TGAPEFVFTTEISSPNLHIRKVLLDCGAVQADALTVDRLASLEKYHQTAVMPRESILRTE VEWLNTIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVVVAGHHHRSIVWQ IAEDYSHCEFLLRLPGYCPMPAFRDVIDVPLVVRRLHKSRSEVRKELGIKDDVKVVIFNF GGQPAGWKLKKEWLPDGWLCLVCGASETQELPPNFIKLAKDAYTPDLMAASDCMLGKIGY GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEHYQCGVEMVRRDLLTGHWKPYLQRAMTL HPCYDGPINGGEVAAHILQDTAVGKKYISGKLSGARRLRDAIVLGYQLQRAPGRDVGIPD WYSVSEKEIGVRPAPTYHEVNGSAESSFEDFEILHGDIQGLTDTMAFLTSLSGLVGNDPR SPEKQSRERVAASVFFDWEEEIYVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAIQR SNPMKQKLWKHTQARQLANGRAVPLLQIVSFGSELSNRAPTFDMDLSDFMDGDKPISYDK AKEYFSQDPSQKWAAYVAGTILVLMTELGVVFTDSMSILVSSSVPEGKGVSSSASVEVAS MSAIAAAYGLNIPPRDLAILCQKVENRIVGAPCGVMDQMTSACGEANKLLAMICQPAEVK ELVSIPTHIRFWGLDSGIRHSVGGTDYGSVRVGTYMGRKMIKCAASDLLSESLPSCPPIQ SGNTNSDEYEEHGVDLLKSEASLEYLCNLPPHRYEAVYARDIPEIITGDAFLEKYGDHND AVTTVDPKRSYCVKAPTRHPIYENFRVEAFKALLTAAKTVEQLSALGELMYQCHYSYNAC GLGSDGTDRLVNMVQEVQHRKTSQDGGPSLFGAKITGGGSGGSVCVIGKNCLKSSEEIFE IQKRYKAATGYLPIVFEGSSPGAGKFGYLKIRRRST

Transcript Sequence

Transcript ID	Os02t0141300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:2231145:2239224:-1 gene:Os02g0141300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:COLLAPSED ABNORMAL POLLEN1 description:Arabinokinase-Like Protein, Pollen development (Os02t0141300-01)
Sequence	GGAGTGTGGAGTCTCTGATAATAAGTGTCGATTTTTGTTGTTCCGGGAGAAATTCCGGGA GATTTGGGGCGGCGGCGGCGATGAGGATTCGGGGAGACGGCGGAGGTGATGAGGAGGAGG CGGCGATGGCGGTGGTGTCGGCGCCGCCGCAGCATCTGGTCTTCGCGTACTACATCACCG GCCATGGCTTCGGCCACGCCACCCGCGCGCTCGAGGTGGTGAGGCACCTGATCGCGGCGG GGCACGACGTGCACGTGGTCACCGGCGCGCCGGAGTTCGTCTTCACCACCGAGATCAGCT CGCCCAACCTCCACATCCGCAAGGTGCTCCTCGACTGCGGCGCCGTCCAGGCCGACGCCC TCACCGTCGATCGCCTCGCCTCCCTCGAGAAGTATCATCAGACGGCCGTGATGCCACGCG AATCGATTCTGAGGACTGAGGTGGAATGGCTCAACACGATCAAGGCCGACCTAGTGGTTT CAGATGTCGTCCCCGTCGCGTGCAGGGCGGCTGCGGATGCTGGCATTCGATCGGTGTGCG TCACCAATTTCAGCTGGGACTTCATTTATGCAGAGTATGTCGTAGTAGCTGGACATCATC ATCGCTCAATTGTGTGGCAGATAGCAGAAGATTATTCACATTGTGAATTCTTACTACGAC TCCCTGGATACTGCCCTATGCCTGCTTTCCGTGATGTCATTGATGTTCCTCTTGTGGTGA GAAGATTGCATAAATCTAGATCTGAGGTGAGGAAGGAATTAGGAATTAAAGATGATGTTA AGGTGGTCATTTTCAACTTTGGAGGACAGCCTGCAGGATGGAAACTGAAGAAAGAATGGC TGCCTGATGGTTGGCTCTGTTTGGTATGTGGTGCATCTGAAACTCAAGAGCTTCCACCAA ATTTCATTAAACTTGCAAAGGACGCCTATACACCTGATTTGATGGCAGCATCTGACTGCA TGCTTGGGAAAATTGGATATGGCACTGTGAGTGAGGCTTTGGCTTACAAGCTGCCATTTG TATTTGTTCGTAGAGATTATTTCAATGAAGAGCCGTTTTTGAGGAATATGCTTGAGCATT ATCAATGTGGCGTTGAGATGGTACGGAGGGATTTACTTACTGGACACTGGAAACCTTATC TGCAACGTGCTATGACACTTCATCCATGCTATGATGGTCCAATAAATGGTGGTGAGGTGG CTGCACATATCCTCCAGGACACTGCTGTTGGCAAGAAGTATATTTCTGGCAAGTTGAGCG GAGCAAGACGTTTGCGTGATGCCATAGTGCTAGGATATCAACTACAAAGGGCTCCAGGGA GAGATGTCGGAATTCCTGACTGGTATTCTGTGTCTGAGAAAGAAATCGGTGTTCGTCCAG CACCAACATATCATGAGGTTAATGGAAGTGCAGAGTCATCTTTTGAGGACTTCGAGATAC TCCATGGGGACATACAAGGATTAACTGATACAATGGCATTTTTAACTAGTTTATCAGGAC TTGTTGGAAATGATCCAAGGAGCCCTGAGAAGCAATCTCGAGAGAGGGTTGCTGCTTCTG TTTTCTTTGATTGGGAGGAGGAAATATATGTTGCAAGAGCACCTGGACGTTTAGATGTCA TGGGTGGCATCGCAGATTATTCAGGAAGTCTTGTATTACAGATGCCCATTCGAGAGGCTT GTCATGTTGCTATTCAGAGAAGTAATCCTATGAAGCAGAAGCTATGGAAGCATACACAAG CTAGGCAACTAGCAAATGGCAGAGCAGTGCCGTTGTTACAAATTGTATCATTTGGTTCTG AATTGAGTAATCGTGCACCAACCTTTGATATGGACCTGTCTGATTTTATGGATGGTGACA AACCAATATCCTATGATAAGGCCAAAGAATATTTCTCTCAGGACCCATCCCAAAAATGGG CTGCATATGTTGCTGGAACAATCCTTGTGTTGATGACCGAGCTAGGTGTGGTCTTCACAG ACAGCATGAGCATTCTGGTTTCTTCATCAGTTCCTGAAGGTAAAGGTGTCTCCTCTTCTG CATCAGTGGAGGTTGCCAGTATGTCTGCTATTGCTGCTGCCTATGGTCTAAATATCCCTC CACGGGATCTTGCCATACTCTGCCAAAAGGTTGAGAATCGCATTGTTGGAGCACCTTGTG GTGTAATGGATCAAATGACATCTGCTTGTGGAGAAGCTAACAAACTTCTTGCAATGATTT GTCAGCCTGCAGAAGTGAAAGAGTTGGTCAGCATTCCAACTCACATTCGATTTTGGGGTC TTGACTCTGGGATACGACATAGTGTTGGTGGGACTGATTATGGCTCTGTAAGGGTAGGCA CTTACATGGGACGCAAGATGATCAAGTGTGCTGCATCTGATCTTCTTTCAGAATCATTAC CCTCCTGTCCTCCTATTCAATCAGGCAACACAAATTCTGATGAATACGAAGAACATGGTG TAGATCTTTTGAAATCTGAAGCGTCGCTGGAGTATTTATGCAACCTACCACCTCATAGAT ATGAAGCTGTTTACGCGAGAGATATTCCAGAGATCATAACCGGGGATGCATTTTTGGAGA AGTATGGAGATCATAATGATGCAGTAACAACTGTTGACCCAAAACGATCTTACTGTGTGA AGGCTCCTACTAGACATCCTATATACGAGAACTTCCGAGTTGAGGCCTTCAAAGCATTGC TAACAGCAGCCAAAACAGTTGAGCAACTTTCGGCCCTTGGAGAATTGATGTATCAGTGCC ACTACAGCTACAATGCTTGTGGGCTTGGTTCTGATGGAACCGACAGGCTTGTTAATATGG TACAAGAAGTCCAGCACAGGAAGACCTCACAGGATGGTGGTCCTAGTTTATTTGGTGCAA AGATAACTGGTGGAGGATCTGGGGGCTCGGTTTGTGTCATTGGGAAAAATTGCTTGAAAA GCAGTGAAGAGATTTTTGAGATTCAGAAGAGATACAAAGCTGCTACCGGGTACCTACCAA TTGTTTTCGAGGGCTCATCTCCAGGTGCAGGCAAGTTTGGATACCTGAAGATTCGACGGC GATCCACATAGCCATCAATCAGCCTAACTGAAGATTTGGCTGTATTTTAGGTCCACACAA ACATTTGTCAGGAACCTGAATATTACCTGTTCATATGGAACACATATCACATCATCCCAT TATGTAGTAGTAATAAGCTCTCTAGTTCATGCAATAATTCTAGTGATTAGTGCACCTCTG GTGCAGACTTCCATTGTGTAAGTGCAGTATCCAGATAATAAAATGGAAGTCTTTAGATTG ATGTTCTGC