Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0141100-00
CDS Infomation

cds chromosome:IRGSP-1.0:2:2207998:2214514:-1 gene:Os02g0141100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 5 description:Similar to Auxin response factor 5. (Os02t0141100-00)
Sequence

CGCGGCGGCTGCGGCGGTGCAGGGGAGCGGAAGGCGGCGGCGATCAACTCGGAGCTGTGG
CACGCGTGCGCCGGCCCGCTCGTGTCGCTGCCGCCGGTGGGCAGCCTCGTCGTCTACTTC
CCGCAAGGCCACAGCGAGCAGGTTGCAGCTTCTATGCAAAAGGATGTGGATGCACATGTT
CCAAGCTACCCAAATCTTCCCTCCAAGTTGATATGTCTTCTTCACGGTGTCAATTTGCAT
GCAGACCCAGATACTGATGAAGTTTATGCACAGATGACTCTTCAACCAGTGAATACATAT
GGAAAAGAGGCGTTGCAAATATCAGAGCTTGCACTAAAACAAGCAAGGCCACAAATGGAA
TTCTTCTGTAAGACACTCACCGCAAGTGATACAAGTACACATGGAGGATTCTCTGTGCCT
CGCCGTGCCGCAGAGAAGATATTCCCTCCCCTGGACTTCTCTATGCAACCTCCAGCTCAA
GAACTGCAAGCTAGAGATATACATGACAATGTGTGGACATTTCGTCATATATATCGAGGT
CAACCAAAAAGACATTTACTTACTACTGGTTGGAGCCTTTTCGTGAGTGGCAAGAGGTTA
TTTGCTGGTGATTCTGTTATTGTTGTGAGGGATGAAAAGCATCAACTTCTACTAGGAATC
AGGCGTGCTAACAGACAACCGACTAATATATCATCTTCAGTACTTTCAAGCGACAGTATG
CACATAGGAGTCCTTGCTGCGGCTGCCCATGCTGCTGCCAACAGTAGCCCTTTTACCATA
TTTTATAACCCTAGGGCCAGTCCTACTGAATTTGTTATCCCATTTGCAAAATACCAGAAG
GCACTGTATAGTAATCAGATATCTTTAGGAATGCGGTTTCGCATGATGTTTGAAACCGAG
GAATTAGGAACAAGAAGGTACATGGGTACAATAACTGGAATAAGTGACCTAGATCCTGTG
AGATGGAAAAACTCCCAATGGCGCAATTTACAGGTTGGCTGGGATGAGTCTGCAGCTGGT
GAAAGGAGGAACAGAGTTTCAATCTGGGAGATTGAACCGGTTGCAGCTCCCTTTTTTCTA
TGTCCCCAACCTTTTTTTGGTGTGAAGCGCCCCAGGCAATTAGATGACGAGTCAGAGATG
GAAAACCTTTTCAAGAGGGCAATGCCTTGGCTTGGTGAGGAGGTATGCATAAAGGATACT
CAAAACCAGAACAGTACAGCACCTGGTCTAAGTTTGGTTCAGTGGATGAACATGAACAGG
CAGCAGAGCTCATCATTGGCTAACACCGCTGCGCAGTCTGAGTACCTGCAAGCTCTAGGT
AACCCTGCCATGCAAAACCTTGCTGCTGATGAACTTGCAAGGCAACTATATGTCCAGAAC
AATCTCCTTCAACAGAACTGCATACAGTTTAATTCTCCCAAGCTCCCTCAGCAAATGCAA
ACCATGAACGATCTGTCCAAGGCGGCAATTCCGTTGAATCAGCTTGGTGCTATCATCAAT
CCTCAAGATCAGAAACAAGATGCTGTCAACCATCAGAGACAGCAGAACTCCATACAAGTG
ATTCCCCTGAGCCAAGCTCAATCTAATCTCGTCCAGGCTCAGGTGATTGTTCAGAATCAG
ATGCAACAGCAGAAGCCATCTCCAACTCAAAACCCGCAAAGGATTAATGGCCAGCGGCTG
CTTTTGTCTCATCAACAGAAGGATCAAAATTTACAGCTGCAACAGCAGCTTTTACTTCAG
CAAAAACAACAGTTACAGCAGCAGCAGCAGCAGCAACAACAGAATCAGCAGCAGCTAAAT
AAGTCCCTTGGACAGTTGGTAAATCTGGCAAGTCAGCAGTCTAAGTTGTTTGATGAGGAG
CTTCAGTTGCAGATATTACAGAAACTGCAGCAGCAATCACTGATGTCACAATCCACATCA
ACACTCTCACAGCCACCTCTGATCCAAGAACAGCAAAAGTTAATCACGGACATGCAAAAG
CAGTTGTCAAATTCACATTCACTTGCTCAGCAACAAATGATGCCCCAACAAGAAATCAAG
CCTTCATTGCAAGCAACACCATTGCTACCCACGGTCCAGCAAGAGCAACAGCAGAAGCTT
TTACAGAAACAAGTCTCACTTGCAGATGTGTCAGGAGTTGCTTTTCAACCAATTTCATCA
ACCAATGTGATCCCCAAAACTGGAGGTGCTATGATCATTTCGGGTGCTACACAATCTGTA
GTTACAGAGGAAATGCCCTCTTGTTCAACATCTCCATCCACAGCTAATGGAAACCACTTT
ACACAATCAACCAAAAACAGACATTGCATCAACACAGAAAGGCTGCCACCGTCCACTGCT
CCAATGTTGATCCCAACCTCCATTGACGCTGTAACAGCAACTCCACTAATGACCAAGGAA
TTGCCAAAGCCGAATAATAATGTGAAGCAAAGTGTTGTCAACTCAAAATTACCAAATGTT
GCTCCTGGCCCACAAAATTGTATAAACCATGCATTGCAAACAGACAACTTGGAAACATCT
TCATCAGCAACTTCATTATGTCCTTCCCGAACAGATGGACTTGTGCATCAAGGTTTCCCC
TCTTCTAACTTCAATCAACACCAGATGTTCAAAGATGCACTTCCTGATGTAGAAATGGAA
GGTGTGGATCCAAGTAACAGTGGCTTGTTTGGGATCAACAATGATAACCTGTTAGGATTC
CCAATAGAAACAGAGGACTTGCTGATAAATGCACTTGATTCTGTCAAGTATCAGAATCAC
ATATCAACTGATGTTGAAAACAACTACCCGATGCAAAAGGATGCTCTGCAAGAAATATCA
ACCTCCATGGTTTCCCAGTCATTTGGTCAGTCGGATATGGCTTTTAATTCCATTGATTCT
GCGATCAATGATGGTGCCTTCTTGAACAAAAATTCCTGGCCCGCTGCCCCTCTGCTGCAG
AGAATGCGGACATTCACCAAGGTGTACAAACGAGGAGCTGTAGGCCGGTCTATTGACATC
GGCAGGTACTCTGGATATGAAGAGTTGAAGCATGCTTTGGCTCGCATGTTTGGTATAGAG
GGTCAACTTGAAGATCGACAGAGAATAGGCTGGAAACTGGTCTACAAGGATCACGAGGAT
GACATCCTGCTTCTTGGTGATGACCCATGGGAGGAGTTTGTGAACTGTGTAAGATGCATT
AGGATTCTATCACCTCAAGAAGTGCAACAGATGAGCTTGGATGGTGATCTGGGGAGCAAT
GTCCTCCCCAACCAGGCTTGCAGCAGCTCAGATGGGGTGAATGGTTGGAGGCCTCGCTGT
GACCAGAACCCCGGGAACCCTTCCATCGGCCCGTATGATCAATTCGAATGA

Peptide Sequence

PEP ID

Os02t0141100-00
PEP Infomation

pep chromosome:IRGSP-1.0:2:2207998:2214514:-1 gene:Os02g0141100 transcript:Os02t0141100-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 5 description:Similar to Auxin response factor 5. (Os02t0141100-00)
Sequence

RGGCGGAGERKAAAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKDVDAHV
PSYPNLPSKLICLLHGVNLHADPDTDEVYAQMTLQPVNTYGKEALQISELALKQARPQME
FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDIHDNVWTFRHIYRG
QPKRHLLTTGWSLFVSGKRLFAGDSVIVVRDEKHQLLLGIRRANRQPTNISSSVLSSDSM
HIGVLAAAAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYSNQISLGMRFRMMFETE
ELGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESAAGERRNRVSIWEIEPVAAPFFL
CPQPFFGVKRPRQLDDESEMENLFKRAMPWLGEEVCIKDTQNQNSTAPGLSLVQWMNMNR
QQSSSLANTAAQSEYLQALGNPAMQNLAADELARQLYVQNNLLQQNCIQFNSPKLPQQMQ
TMNDLSKAAIPLNQLGAIINPQDQKQDAVNHQRQQNSIQVIPLSQAQSNLVQAQVIVQNQ
MQQQKPSPTQNPQRINGQRLLLSHQQKDQNLQLQQQLLLQQKQQLQQQQQQQQQNQQQLN
KSLGQLVNLASQQSKLFDEELQLQILQKLQQQSLMSQSTSTLSQPPLIQEQQKLITDMQK
QLSNSHSLAQQQMMPQQEIKPSLQATPLLPTVQQEQQQKLLQKQVSLADVSGVAFQPISS
TNVIPKTGGAMIISGATQSVVTEEMPSCSTSPSTANGNHFTQSTKNRHCINTERLPPSTA
PMLIPTSIDAVTATPLMTKELPKPNNNVKQSVVNSKLPNVAPGPQNCINHALQTDNLETS
SSATSLCPSRTDGLVHQGFPSSNFNQHQMFKDALPDVEMEGVDPSNSGLFGINNDNLLGF
PIETEDLLINALDSVKYQNHISTDVENNYPMQKDALQEISTSMVSQSFGQSDMAFNSIDS
AINDGAFLNKNSWPAAPLLQRMRTFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIE
GQLEDRQRIGWKLVYKDHEDDILLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDGDLGSN
VLPNQACSSSDGVNGWRPRCDQNPGNPSIGPYDQFE

Transcript Sequence

Transcript ID

Os02t0141100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:2207998:2214514:-1 gene:Os02g0141100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUXIN RESPONSE FACTOR 5 description:Similar to Auxin response factor 5. (Os02t0141100-00)
Sequence

CTCGCTCGTCTGGTGGCGGTGGCTGACGCGGCGGCTGCGGCGGTGCAGGGGAGCGGAAGG
CGGCGGCGATCAACTCGGAGCTGTGGCACGCGTGCGCCGGCCCGCTCGTGTCGCTGCCGC
CGGTGGGCAGCCTCGTCGTCTACTTCCCGCAAGGCCACAGCGAGCAGGTTGCAGCTTCTA
TGCAAAAGGATGTGGATGCACATGTTCCAAGCTACCCAAATCTTCCCTCCAAGTTGATAT
GTCTTCTTCACGGTGTCAATTTGCATGCAGACCCAGATACTGATGAAGTTTATGCACAGA
TGACTCTTCAACCAGTGAATACATATGGAAAAGAGGCGTTGCAAATATCAGAGCTTGCAC
TAAAACAAGCAAGGCCACAAATGGAATTCTTCTGTAAGACACTCACCGCAAGTGATACAA
GTACACATGGAGGATTCTCTGTGCCTCGCCGTGCCGCAGAGAAGATATTCCCTCCCCTGG
ACTTCTCTATGCAACCTCCAGCTCAAGAACTGCAAGCTAGAGATATACATGACAATGTGT
GGACATTTCGTCATATATATCGAGGTCAACCAAAAAGACATTTACTTACTACTGGTTGGA
GCCTTTTCGTGAGTGGCAAGAGGTTATTTGCTGGTGATTCTGTTATTGTTGTGAGGGATG
AAAAGCATCAACTTCTACTAGGAATCAGGCGTGCTAACAGACAACCGACTAATATATCAT
CTTCAGTACTTTCAAGCGACAGTATGCACATAGGAGTCCTTGCTGCGGCTGCCCATGCTG
CTGCCAACAGTAGCCCTTTTACCATATTTTATAACCCTAGGGCCAGTCCTACTGAATTTG
TTATCCCATTTGCAAAATACCAGAAGGCACTGTATAGTAATCAGATATCTTTAGGAATGC
GGTTTCGCATGATGTTTGAAACCGAGGAATTAGGAACAAGAAGGTACATGGGTACAATAA
CTGGAATAAGTGACCTAGATCCTGTGAGATGGAAAAACTCCCAATGGCGCAATTTACAGG
TTGGCTGGGATGAGTCTGCAGCTGGTGAAAGGAGGAACAGAGTTTCAATCTGGGAGATTG
AACCGGTTGCAGCTCCCTTTTTTCTATGTCCCCAACCTTTTTTTGGTGTGAAGCGCCCCA
GGCAATTAGATGACGAGTCAGAGATGGAAAACCTTTTCAAGAGGGCAATGCCTTGGCTTG
GTGAGGAGGTATGCATAAAGGATACTCAAAACCAGAACAGTACAGCACCTGGTCTAAGTT
TGGTTCAGTGGATGAACATGAACAGGCAGCAGAGCTCATCATTGGCTAACACCGCTGCGC
AGTCTGAGTACCTGCAAGCTCTAGGTAACCCTGCCATGCAAAACCTTGCTGCTGATGAAC
TTGCAAGGCAACTATATGTCCAGAACAATCTCCTTCAACAGAACTGCATACAGTTTAATT
CTCCCAAGCTCCCTCAGCAAATGCAAACCATGAACGATCTGTCCAAGGCGGCAATTCCGT
TGAATCAGCTTGGTGCTATCATCAATCCTCAAGATCAGAAACAAGATGCTGTCAACCATC
AGAGACAGCAGAACTCCATACAAGTGATTCCCCTGAGCCAAGCTCAATCTAATCTCGTCC
AGGCTCAGGTGATTGTTCAGAATCAGATGCAACAGCAGAAGCCATCTCCAACTCAAAACC
CGCAAAGGATTAATGGCCAGCGGCTGCTTTTGTCTCATCAACAGAAGGATCAAAATTTAC
AGCTGCAACAGCAGCTTTTACTTCAGCAAAAACAACAGTTACAGCAGCAGCAGCAGCAGC
AACAACAGAATCAGCAGCAGCTAAATAAGTCCCTTGGACAGTTGGTAAATCTGGCAAGTC
AGCAGTCTAAGTTGTTTGATGAGGAGCTTCAGTTGCAGATATTACAGAAACTGCAGCAGC
AATCACTGATGTCACAATCCACATCAACACTCTCACAGCCACCTCTGATCCAAGAACAGC
AAAAGTTAATCACGGACATGCAAAAGCAGTTGTCAAATTCACATTCACTTGCTCAGCAAC
AAATGATGCCCCAACAAGAAATCAAGCCTTCATTGCAAGCAACACCATTGCTACCCACGG
TCCAGCAAGAGCAACAGCAGAAGCTTTTACAGAAACAAGTCTCACTTGCAGATGTGTCAG
GAGTTGCTTTTCAACCAATTTCATCAACCAATGTGATCCCCAAAACTGGAGGTGCTATGA
TCATTTCGGGTGCTACACAATCTGTAGTTACAGAGGAAATGCCCTCTTGTTCAACATCTC
CATCCACAGCTAATGGAAACCACTTTACACAATCAACCAAAAACAGACATTGCATCAACA
CAGAAAGGCTGCCACCGTCCACTGCTCCAATGTTGATCCCAACCTCCATTGACGCTGTAA
CAGCAACTCCACTAATGACCAAGGAATTGCCAAAGCCGAATAATAATGTGAAGCAAAGTG
TTGTCAACTCAAAATTACCAAATGTTGCTCCTGGCCCACAAAATTGTATAAACCATGCAT
TGCAAACAGACAACTTGGAAACATCTTCATCAGCAACTTCATTATGTCCTTCCCGAACAG
ATGGACTTGTGCATCAAGGTTTCCCCTCTTCTAACTTCAATCAACACCAGATGTTCAAAG
ATGCACTTCCTGATGTAGAAATGGAAGGTGTGGATCCAAGTAACAGTGGCTTGTTTGGGA
TCAACAATGATAACCTGTTAGGATTCCCAATAGAAACAGAGGACTTGCTGATAAATGCAC
TTGATTCTGTCAAGTATCAGAATCACATATCAACTGATGTTGAAAACAACTACCCGATGC
AAAAGGATGCTCTGCAAGAAATATCAACCTCCATGGTTTCCCAGTCATTTGGTCAGTCGG
ATATGGCTTTTAATTCCATTGATTCTGCGATCAATGATGGTGCCTTCTTGAACAAAAATT
CCTGGCCCGCTGCCCCTCTGCTGCAGAGAATGCGGACATTCACCAAGGTGTACAAACGAG
GAGCTGTAGGCCGGTCTATTGACATCGGCAGGTACTCTGGATATGAAGAGTTGAAGCATG
CTTTGGCTCGCATGTTTGGTATAGAGGGTCAACTTGAAGATCGACAGAGAATAGGCTGGA
AACTGGTCTACAAGGATCACGAGGATGACATCCTGCTTCTTGGTGATGACCCATGGGAGG
AGTTTGTGAACTGTGTAAGATGCATTAGGATTCTATCACCTCAAGAAGTGCAACAGATGA
GCTTGGATGGTGATCTGGGGAGCAATGTCCTCCCCAACCAGGCTTGCAGCAGCTCAGATG
GGGTGAATGGTTGGAGGCCTCGCTGTGACCAGAACCCCGGGAACCCTTCCATCGGCCCGT
ATGATCAATTCGAATGACCTGACTTAGAGGTTCATTCACA