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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0128800-03
CDS Infomation

cds chromosome:IRGSP-1.0:2:1481265:1482452:-1 gene:Os02g0128800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-9, RING-HC protein 9 description:TRAF-type domain containing protein. (Os02t0128800-01);TRAF-type domain containing protein. (Os02t0128800-02);Similar to SINA2. (Os02t0128800-03)
Sequence

ATATGCTCTAACTGCAAGCATAGGGTGGAGAATCATTGCCCTACTTGTCGCCAAGAACTG
GGTAATATCAGATGTTTGGCTCTTGAGAAGGTGGCTGAGTCACTTCAGCTTCCATGCAAA
TATCAAAGCCTAGGCTGTGCTGAGATTCATCCTTACCAAAACAAACTTAAGCATGAGGAG
CTCTGCAGGTTCAGGCCATATAGTTGTCCATATGCAGGTTCAGAATGCCTGATTGCTGGC
GATGTTCCGATGCTTGTCTCTCATCTCATAAACGACCATAAGGTGGACTTGCATGAAGGC
TGCACCTTTAACCACCGTTATGTGAAGTCCAACCCTTATGAAGTGGAAAACGCTACATGG
ATGCTGACGGTTTTCAAGTGTTTTGGACAGCACTTCTGCCTGCATTTTGAGGCATTCCTG
CTGGGGATGGCACCAGTGTACATGGCGTTCCTGAGGTTCATGGGCGAGGACAGCGAGGCC
CGGAACTTCTGCTACAGCCTGGAGGTGGGCGGGAACGGGCGGAAGCTGACATGGCAGGGC
ATCCCCCGGAGCATCAGGGACAGCCACAAGAAGGTCCGGGACAGCTTCGACGGCCTCATC
ATCCACCGGAACATGGCCCTCTTCTTCTCCGGCGGCAACAGGCAGGAGCTCAAGCTGCGG
GTTACCGGCCGCATCTGGAAGGAGCAATGA

Peptide Sequence

PEP ID

Os02t0128800-03
PEP Infomation

pep chromosome:IRGSP-1.0:2:1481265:1482452:-1 gene:Os02g0128800 transcript:Os02t0128800-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-9, RING-HC protein 9 description:TRAF-type domain containing protein. (Os02t0128800-01);TRAF-type domain containing protein. (Os02t0128800-02);Similar to SINA2. (Os02t0128800-03)
Sequence

ICSNCKHRVENHCPTCRQELGNIRCLALEKVAESLQLPCKYQSLGCAEIHPYQNKLKHEE
LCRFRPYSCPYAGSECLIAGDVPMLVSHLINDHKVDLHEGCTFNHRYVKSNPYEVENATW
MLTVFKCFGQHFCLHFEAFLLGMAPVYMAFLRFMGEDSEARNFCYSLEVGGNGRKLTWQG
IPRSIRDSHKKVRDSFDGLIIHRNMALFFSGGNRQELKLRVTGRIWKEQ

Transcript Sequence

Transcript ID

Os02t0128800-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:1481265:1482452:-1 gene:Os02g0128800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein OsRFPHC-9, RING-HC protein 9 description:TRAF-type domain containing protein. (Os02t0128800-01);TRAF-type domain containing protein. (Os02t0128800-02);Similar to SINA2. (Os02t0128800-03)
Sequence

AATATGCTCTAACTGCAAGCATAGGGTGGAGAATCATTGCCCTACTTGTCGCCAAGAACT
GGGTAATATCAGATGTTTGGCTCTTGAGAAGGTGGCTGAGTCACTTCAGCTTCCATGCAA
ATATCAAAGCCTAGGCTGTGCTGAGATTCATCCTTACCAAAACAAACTTAAGCATGAGGA
GCTCTGCAGGTTCAGGCCATATAGTTGTCCATATGCAGGTTCAGAATGCCTGATTGCTGG
CGATGTTCCGATGCTTGTCTCTCATCTCATAAACGACCATAAGGTGGACTTGCATGAAGG
CTGCACCTTTAACCACCGTTATGTGAAGTCCAACCCTTATGAAGTGGAAAACGCTACATG
GATGCTGACGGTTTTCAAGTGTTTTGGACAGCACTTCTGCCTGCATTTTGAGGCATTCCT
GCTGGGGATGGCACCAGTGTACATGGCGTTCCTGAGGTTCATGGGCGAGGACAGCGAGGC
CCGGAACTTCTGCTACAGCCTGGAGGTGGGCGGGAACGGGCGGAAGCTGACATGGCAGGG
CATCCCCCGGAGCATCAGGGACAGCCACAAGAAGGTCCGGGACAGCTTCGACGGCCTCAT
CATCCACCGGAACATGGCCCTCTTCTTCTCCGGCGGCAACAGGCAGGAGCTCAAGCTGCG
GGTTACCGGCCGCATCTGGAAGGAGCAATGACGTGAACGATGCAGCAGCAGTGCTACTGA
GACTGATAGCAAATGCCAAGATCTCCCCATTGATGATTCCACGCTGATAGCACATTGTGA
TGTGCTGGGAGAGGAGAAAAATGGGGAGACTTGTTGTGCATTGATGTACAAATACAATTT
GCGGCATGGTGGACTGGCTAGGACACATCTGTAGCCTAGCATGTGTTGAACTTGGAACCT
GATTTATTAACACGATGGAAATGAACTTACGGAAGGG