Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0120500-02
CDS Infomation	cds chromosome:IRGSP-1.0:2:1073553:1076645:-1 gene:Os02g0120500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TAPETUM DEGENERATION RETARDATION description:Basic helix-loop-helix (bHLH) transcription factor, Tapetum development and degeneration (Os02t0120500-01);Similar to Helix-loop-helix DNA-binding domain containing protein. (Os02t0120500-02)
Sequence	ATGGGAAGAGGAGACCACCTGCTGATGAAGAACAGCAATGCTGCTGCAGCTGCAGCTGCT GTCAATGGAGGTGGCACCAGTTTGGATGCTGCATTGAGGCCTCTAGTTGGTTCAGATGGC TGGGATTACTGCATCTACTGGAGGCTCTCTCCTGATCAGAGGTTCTTGGAGATGACAGGA TTCTGCTGCAGCAGTGAGCTTGAAGCACAGGTCTCAGCACTGCTGGACCTGCCTTCTTCA ATCCCACTGGACTCCTCCTCCATAGGGATGCATGCGCAGGCATTGCTGTCGAACCAGCCG ATCTGGCAGAGCAGCAGTGAGGAGGAGGAGGCTGATGGCGGCGGTGGCGCCAAGACGCGG CTGCTGGTCCCCGTCGCCGGCGGCCTCGTCGAGCTCTTCGCGTCGAGATATATGGCGGAG GAGCAGCAGATGGCGGAGCTTGTCATGGCGCAGTGCGGCGGCGGCGGCGCCGGGGACGAC GGTGGGGGGCAGGCGTGGCCGCCGCCGGAGACGCCCAGCTTCCAGTGGGACGGAGGCGCC GACGCGCAGAGGCTGATGTACGGCGGCTCGTCGCTGAACCTGTTCGACGCCGCCGCCGCC GACGACGACCCGTTCTTGGGTGGTGGTGGTGGTGACGCCGTGGGCGACGAGGCGGCGGCG GCGGGCGCGTGGCCGTACGCGGGGATGGCGGTGAGCGAGCCGTCGGTGGCGGTGGCGCAG GAGCAGATGCAGCACGCGGCGGGCGGCGGCGTGGCGGAGTCCGGGTCGGAGGGGAGGAAG CTGCATGGCGGTGACCCGGAGGACGACGGCGACGGCGAGGGGCGCTCCGGCGGCGCCAAG AGGCAGCAGTGCAAGAACCTCGAGGCGGAGAGGAAGCGGAGGAAGAAGCTCAATGGCCAC CTCTACAAGCTCCGCTCGCTCGTCCCAAACATCACCAAGATGGATCGCGCGTCGATTCTT GGAGACGCGATCGACTACATCGTGGGGTTGCAGAAGCAGGTGAAGGAGCTGCAGGACGAG CTGGAAGACAACCATGTCCACCATAAGCCGCCCGACGTGCTCATCGACCACCCGCCGCCG GCGAGCCTCGTCGGGCTCGACAACGACGACGCCTCGCCGCCCAACAGCCACCAACAGCAG CCGCCGCTCGCCGTTTCCGGCAGCAGCAGCAGGAGGAGTAACAAGGACCCAGCAATGACC GACGACAAGGTCGGCGGCGGCGGCGGCGGTGGGCACCGGATGGAGCCGCAGCTGGAGGTG CGTCAGGTGCAGGGGAACGAGCTGTTCGTCCAGGTGCTCTGGGAGCACAAGCCCGGCGGG TTCGTCCGCCTCATGGACGCCATGAACGCGCTCGGCCTCGAGGTCATCAACGTCAACGTC ACCACCTACAAGACCCTCGTCCTCAACGTCTTCCGCGTCATGGTGAGGGACAGCGAGGTG GCGGTGCAGGCGGACAGGGTGAGGGACTCGCTGCTGGAGGTGACGCGGGAGACGTACCCC GGCGTGTGGCCGTCGCCGCAGGAGGAGGACGACGCCAAGTTCGACGGCGGCGACGGCGGG CAGGCTGCGGCGGCGGCGGCGGCGGCCGGTGGAGAGCACTACCACGACGAAGTCGGCGGC GGATACCATCAGCACCTGCATTACCTCGCGTTTGATTGA

Peptide Sequence

PEP ID	Os02t0120500-02
PEP Infomation	pep chromosome:IRGSP-1.0:2:1073553:1076645:-1 gene:Os02g0120500 transcript:Os02t0120500-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TAPETUM DEGENERATION RETARDATION description:Basic helix-loop-helix (bHLH) transcription factor, Tapetum development and degeneration (Os02t0120500-01);Similar to Helix-loop-helix DNA-binding domain containing protein. (Os02t0120500-02)
Sequence	MGRGDHLLMKNSNAAAAAAAVNGGGTSLDAALRPLVGSDGWDYCIYWRLSPDQRFLEMTG FCCSSELEAQVSALLDLPSSIPLDSSSIGMHAQALLSNQPIWQSSSEEEEADGGGGAKTR LLVPVAGGLVELFASRYMAEEQQMAELVMAQCGGGGAGDDGGGQAWPPPETPSFQWDGGA DAQRLMYGGSSLNLFDAAAADDDPFLGGGGGDAVGDEAAAAGAWPYAGMAVSEPSVAVAQ EQMQHAAGGGVAESGSEGRKLHGGDPEDDGDGEGRSGGAKRQQCKNLEAERKRRKKLNGH LYKLRSLVPNITKMDRASILGDAIDYIVGLQKQVKELQDELEDNHVHHKPPDVLIDHPPP ASLVGLDNDDASPPNSHQQQPPLAVSGSSSRRSNKDPAMTDDKVGGGGGGGHRMEPQLEV RQVQGNELFVQVLWEHKPGGFVRLMDAMNALGLEVINVNVTTYKTLVLNVFRVMVRDSEV AVQADRVRDSLLEVTRETYPGVWPSPQEEDDAKFDGGDGGQAAAAAAAAGGEHYHDEVGG GYHQHLHYLAFD

Transcript Sequence

Transcript ID	Os02t0120500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:1073553:1076645:-1 gene:Os02g0120500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TAPETUM DEGENERATION RETARDATION description:Basic helix-loop-helix (bHLH) transcription factor, Tapetum development and degeneration (Os02t0120500-01);Similar to Helix-loop-helix DNA-binding domain containing protein. (Os02t0120500-02)
Sequence	AAAATGATTCTTCAGTTACCAATAGCTATCAGCTGATGCCTCTCTCTTCCATCTGTTGAT CACTGCCACAGTTCGTCAGTTAGTTTGAAGCGATCTCAGGAAGACAGAAGGGCAAGGGTG ATCACCACATGGGAAGAGGAGACCACCTGCTGATGAAGAACAGCAATGCTGCTGCAGCTG CAGCTGCTGTCAATGGAGGTGGCACCAGTTTGGATGCTGCATTGAGGCCTCTAGTTGGTT CAGATGGCTGGGATTACTGCATCTACTGGAGGCTCTCTCCTGATCAGAGGTTCTTGGAGA TGACAGGATTCTGCTGCAGCAGTGAGCTTGAAGCACAGGTCTCAGCACTGCTGGACCTGC CTTCTTCAATCCCACTGGACTCCTCCTCCATAGGGATGCATGCGCAGGCATTGCTGTCGA ACCAGCCGATCTGGCAGAGCAGCAGTGAGGAGGAGGAGGCTGATGGCGGCGGTGGCGCCA AGACGCGGCTGCTGGTCCCCGTCGCCGGCGGCCTCGTCGAGCTCTTCGCGTCGAGATATA TGGCGGAGGAGCAGCAGATGGCGGAGCTTGTCATGGCGCAGTGCGGCGGCGGCGGCGCCG GGGACGACGGTGGGGGGCAGGCGTGGCCGCCGCCGGAGACGCCCAGCTTCCAGTGGGACG GAGGCGCCGACGCGCAGAGGCTGATGTACGGCGGCTCGTCGCTGAACCTGTTCGACGCCG CCGCCGCCGACGACGACCCGTTCTTGGGTGGTGGTGGTGGTGACGCCGTGGGCGACGAGG CGGCGGCGGCGGGCGCGTGGCCGTACGCGGGGATGGCGGTGAGCGAGCCGTCGGTGGCGG TGGCGCAGGAGCAGATGCAGCACGCGGCGGGCGGCGGCGTGGCGGAGTCCGGGTCGGAGG GGAGGAAGCTGCATGGCGGTGACCCGGAGGACGACGGCGACGGCGAGGGGCGCTCCGGCG GCGCCAAGAGGCAGCAGTGCAAGAACCTCGAGGCGGAGAGGAAGCGGAGGAAGAAGCTCA ATGGCCACCTCTACAAGCTCCGCTCGCTCGTCCCAAACATCACCAAGATGGATCGCGCGT CGATTCTTGGAGACGCGATCGACTACATCGTGGGGTTGCAGAAGCAGGTGAAGGAGCTGC AGGACGAGCTGGAAGACAACCATGTCCACCATAAGCCGCCCGACGTGCTCATCGACCACC CGCCGCCGGCGAGCCTCGTCGGGCTCGACAACGACGACGCCTCGCCGCCCAACAGCCACC AACAGCAGCCGCCGCTCGCCGTTTCCGGCAGCAGCAGCAGGAGGAGTAACAAGGACCCAG CAATGACCGACGACAAGGTCGGCGGCGGCGGCGGCGGTGGGCACCGGATGGAGCCGCAGC TGGAGGTGCGTCAGGTGCAGGGGAACGAGCTGTTCGTCCAGGTGCTCTGGGAGCACAAGC CCGGCGGGTTCGTCCGCCTCATGGACGCCATGAACGCGCTCGGCCTCGAGGTCATCAACG TCAACGTCACCACCTACAAGACCCTCGTCCTCAACGTCTTCCGCGTCATGGTGAGGGACA GCGAGGTGGCGGTGCAGGCGGACAGGGTGAGGGACTCGCTGCTGGAGGTGACGCGGGAGA CGTACCCCGGCGTGTGGCCGTCGCCGCAGGAGGAGGACGACGCCAAGTTCGACGGCGGCG ACGGCGGGCAGGCTGCGGCGGCGGCGGCGGCGGCCGGTGGAGAGCACTACCACGACGAAG TCGGCGGCGGATACCATCAGCACCTGCATTACCTCGCGTTTGATTGATGATGATGATTGA TTTTACCATCTACGTCTCACTACTAGTGTATACACACTCGAATTATTCGAGAAAGAAACA TAATGCTACGTACTAGTAATAATGGATTTGATAAGTAGTTGTCTAGTATTTGTGATTAAT GGCATATATGCATAATGACTTGATGACTGAAATGTGGCTAGCTAGAATTGTGGATACTTC TATCGAGTGTTTTTCCACTTTTGTTGGAAAAACTTTTGCTTGCC