Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0119700-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:1038399:1039710:-1 gene:Os02g0119700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0119700-01)
Sequence

ATGGGGAAGGTGCCGCACGCCATGCGCGCCGCCAAGCTCCCCCTCGCCGTCCTTGCCAAG
CCCACCCATGCTTCGGCTTCCCAGCCCCCTGCGCCGCCGAGGCCCAGCAATCCCAGGCAC
CGGAAAACCCCAGCCAAGGCTTCCAAAACCCCGGCTCCGGCCACGGCCGCCGCGCCGCCG
CCGGTAGAGAAGAGGCCGATCAAGACTGCCTCCGACCTCGCCGCAGCCATCCGCGCGGCG
GCCGACGCCGACGTCGACGCGGCGGTCGACCTCGCGCGGTCCGCGGCCCGCACCATCCCG
CTCCCGCCGCACTCCCTCTCGCTGCTCCTCCGCCGCCTCGCCCGCCACCGCTCCGTCGCC
GCGGCGAGGGGCCTCCTCGCGGAGCTCCACCCCTCGCCCGCCTCCCCGCCGCCACGCCCC
GCGCTGCTCGCGCTGTCCGACGCCGTCTGCCGCCGCGGGGAGCCCCGGGAGATCGCGCAG
CTCCTCCCCGTCCTCGCCGACCACGGCGTCAAGGCCGACGCCCCCGTCTACAACGCCCTC
ATGAAGGCGCACTGCGCCGCCTCCGACCCCGCGGGTGTCCTCGGCGTCCTCCGCCGCATG
AAGGACGACGGCGTCGAGCCCGACCTCGTCACCTACAACACCCTCGTCTTCGGCCTCGCG
CGCGCCGGGATGGTCACCAAGGCAAGAACCTATCTCGACGCCATGGCCGCCGCTGGCCAC
TTCCCGGACGTCATCACATACACCTCGCTGATGAACGGGATGTGCGTCAAGGGCGACGCC
ATGGGAGCGCTTGCTCTCCTCGAGGAGATGGAGGCCAAGGGATGCGAGCCGAATGAGCGA
ACATACAACACTCTGCTCATGGGGCTCTGCAAGAACAAGAAGCTCGACAAGGCCGTCGAT
GTTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTC
GTCAGGGCGTTGTGTCGTGCAGGGAGAATACCGGATGCATACGAGGTGTTCGACTACGGG
ATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAG
TGGCTGCACCGGATGAAATCATAA

Peptide Sequence

PEP ID

Os02t0119700-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:1038399:1039710:-1 gene:Os02g0119700 transcript:Os02t0119700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0119700-01)
Sequence

MGKVPHAMRAAKLPLAVLAKPTHASASQPPAPPRPSNPRHRKTPAKASKTPAPATAAAPP
PVEKRPIKTASDLAAAIRAAADADVDAAVDLARSAARTIPLPPHSLSLLLRRLARHRSVA
AARGLLAELHPSPASPPPRPALLALSDAVCRRGEPREIAQLLPVLADHGVKADAPVYNAL
MKAHCAASDPAGVLGVLRRMKDDGVEPDLVTYNTLVFGLARAGMVTKARTYLDAMAAAGH
FPDVITYTSLMNGMCVKGDAMGALALLEEMEAKGCEPNERTYNTLLMGLCKNKKLDKAVD
VYKSMVGAAMKLEAPAYATFVRALCRAGRIPDAYEVFDYGIESKSFAEVTLYTELENSLK
WLHRMKS

Transcript Sequence

Transcript ID

Os02t0119700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:1038399:1039710:-1 gene:Os02g0119700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0119700-01)
Sequence

GTCTCCTTCTGTCACCATTCGATTCCCAAACTCTCGCCGCCGCCGCCGCCGCCGGGGACG
ATGGGGAAGGTGCCGCACGCCATGCGCGCCGCCAAGCTCCCCCTCGCCGTCCTTGCCAAG
CCCACCCATGCTTCGGCTTCCCAGCCCCCTGCGCCGCCGAGGCCCAGCAATCCCAGGCAC
CGGAAAACCCCAGCCAAGGCTTCCAAAACCCCGGCTCCGGCCACGGCCGCCGCGCCGCCG
CCGGTAGAGAAGAGGCCGATCAAGACTGCCTCCGACCTCGCCGCAGCCATCCGCGCGGCG
GCCGACGCCGACGTCGACGCGGCGGTCGACCTCGCGCGGTCCGCGGCCCGCACCATCCCG
CTCCCGCCGCACTCCCTCTCGCTGCTCCTCCGCCGCCTCGCCCGCCACCGCTCCGTCGCC
GCGGCGAGGGGCCTCCTCGCGGAGCTCCACCCCTCGCCCGCCTCCCCGCCGCCACGCCCC
GCGCTGCTCGCGCTGTCCGACGCCGTCTGCCGCCGCGGGGAGCCCCGGGAGATCGCGCAG
CTCCTCCCCGTCCTCGCCGACCACGGCGTCAAGGCCGACGCCCCCGTCTACAACGCCCTC
ATGAAGGCGCACTGCGCCGCCTCCGACCCCGCGGGTGTCCTCGGCGTCCTCCGCCGCATG
AAGGACGACGGCGTCGAGCCCGACCTCGTCACCTACAACACCCTCGTCTTCGGCCTCGCG
CGCGCCGGGATGGTCACCAAGGCAAGAACCTATCTCGACGCCATGGCCGCCGCTGGCCAC
TTCCCGGACGTCATCACATACACCTCGCTGATGAACGGGATGTGCGTCAAGGGCGACGCC
ATGGGAGCGCTTGCTCTCCTCGAGGAGATGGAGGCCAAGGGATGCGAGCCGAATGAGCGA
ACATACAACACTCTGCTCATGGGGCTCTGCAAGAACAAGAAGCTCGACAAGGCCGTCGAT
GTTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTC
GTCAGGGCGTTGTGTCGTGCAGGGAGAATACCGGATGCATACGAGGTGTTCGACTACGGG
ATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAG
TGGCTGCACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTAC
TTGCTTCAGCCTTAGTTTTTTTTTCCATGAAAAGCTAGTTGCCTGCCTTAATTTGTTGTA
TTACAATGAAATATGCAAATTCAGATGAATCTGTGATATGATTGTTTGATCT